RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 ABCC11Q96J66 1382 aa27.4■■□□□ 1.98
CLN6-220ENST00000637450 TECPR2O15040 1411 aa27.4■■□□□ 1.98
CLN6-220ENST00000637450 C8orf37Q96NL8 207 aa27.39■■□□□ 1.98
CLN6-220ENST00000637450 LAMC1P11047 1609 aa27.38■■□□□ 1.97
CLN6-220ENST00000637450 PIK3C2GO75747 1445 aa27.38■■□□□ 1.97
CLN6-220ENST00000637450 ESCO1Q5FWF5 840 aa27.37■■□□□ 1.97
CLN6-220ENST00000637450 C14orf93Q9H972 538 aaKnown RBP27.34■■□□□ 1.97
CLN6-220ENST00000637450 QTRT2Q9H974 415 aaKnown RBP27.34■■□□□ 1.97
CLN6-220ENST00000637450 CDC42BPGQ6DT37 1551 aa27.34■■□□□ 1.97
CLN6-220ENST00000637450 IFT172Q9UG01 1749 aa27.33■■□□□ 1.97
CLN6-220ENST00000637450 ADAMTS2O95450 1211 aa27.33■■□□□ 1.97
CLN6-220ENST00000637450 NPHP3Q7Z494 1330 aa27.33■■□□□ 1.97
CLN6-220ENST00000637450 RAB3GAP2Q9H2M9 1393 aa27.33■■□□□ 1.97
CLN6-220ENST00000637450 PLEKHH1Q9ULM0 1364 aa27.33■■□□□ 1.97
CLN6-220ENST00000637450 SIRT1Q96EB6 747 aa27.32■■□□□ 1.96
CLN6-220ENST00000637450 NGLY1Q96IV0 654 aa27.32■■□□□ 1.96
CLN6-220ENST00000637450 YTHDC2Q9H6S0 1430 aaKnown RBP27.32■■□□□ 1.96
CLN6-220ENST00000637450 CDK12Q9NYV4 1490 aaPredicted RBP27.31■■□□□ 1.96
CLN6-220ENST00000637450 FOXO3O43524 673 aa27.3■■□□□ 1.96
CLN6-220ENST00000637450 UPF1Q92900 1129 aaKnown RBP eCLIP27.3■■□□□ 1.96
CLN6-220ENST00000637450 NUTM2FA1L443 756 aa27.29■■□□□ 1.96
CLN6-220ENST00000637450 NRXN1Q9ULB1 1477 aa27.28■■□□□ 1.96
CLN6-220ENST00000637450 RBM6P78332 1123 aaKnown RBP27.28■■□□□ 1.96
CLN6-220ENST00000637450 CFAP70Q5T0N1 1121 aa27.28■■□□□ 1.96
CLN6-220ENST00000637450 DHX57Q6P158 1386 aaKnown RBP27.25■■□□□ 1.95
CLN6-220ENST00000637450 XPCQ01831 940 aaPredicted RBP27.25■■□□□ 1.95
CLN6-220ENST00000637450 PXDNQ92626 1479 aa27.25■■□□□ 1.95
CLN6-220ENST00000637450 MYOM2P54296 1465 aa27.24■■□□□ 1.95
CLN6-220ENST00000637450 FNBP4Q8N3X1 1017 aaPredicted RBP27.23■■□□□ 1.95
CLN6-220ENST00000637450 KNDC1Q76NI1 1749 aa27.23■■□□□ 1.95
CLN6-220ENST00000637450 USP21Q9UK80 565 aa27.22■■□□□ 1.95
CLN6-220ENST00000637450 COL22A1Q8NFW1 1626 aaPredicted RBP27.19■■□□□ 1.94
CLN6-220ENST00000637450 HRCP23327 699 aa27.19■■□□□ 1.94
CLN6-220ENST00000637450 RGS12O14924 1447 aa27.18■■□□□ 1.94
CLN6-220ENST00000637450 PRAM1Q96QH2 718 aa27.18■■□□□ 1.94
CLN6-220ENST00000637450 TRPC5Q9UL62 973 aaPredicted RBP27.18■■□□□ 1.94
CLN6-220ENST00000637450 KRT28Q7Z3Y7 464 aa27.15■■□□□ 1.94
CLN6-220ENST00000637450 SPATA31A3Q5VYP0 1347 aa27.15■■□□□ 1.94
CLN6-220ENST00000637450 SAFB2Q14151 953 aaKnown RBP eCLIP27.14■■□□□ 1.94
CLN6-220ENST00000637450 FMN2Q9NZ56 1722 aa27.13■■□□□ 1.93
CLN6-220ENST00000637450 PHF8Q9UPP1 1060 aa27.13■■□□□ 1.93
CLN6-220ENST00000637450 POGKQ9P215 609 aa27.12■■□□□ 1.93
CLN6-220ENST00000637450 ATRNO75882 1429 aa27.11■■□□□ 1.93
CLN6-220ENST00000637450 DCAF11Q8TEB1 546 aa27.11■■□□□ 1.93
CLN6-220ENST00000637450 KDM2AQ9Y2K7 1162 aa27.11■■□□□ 1.93
CLN6-220ENST00000637450 STAC3Q96MF2 364 aa27.1■■□□□ 1.93
CLN6-220ENST00000637450 BCL9LQ86UU0 1499 aa27.09■■□□□ 1.93
CLN6-220ENST00000637450 PSME1Q06323 249 aa27.09■■□□□ 1.93
CLN6-220ENST00000637450 DLC1Q96QB1 1528 aa27.09■■□□□ 1.93
CLN6-220ENST00000637450 TRAK1Q9UPV9 953 aa27.08■■□□□ 1.93
CLN6-220ENST00000637450 ADGRB1O14514 1584 aa27.07■■□□□ 1.92
CLN6-220ENST00000637450 KIF1AQ12756 1690 aa27.07■■□□□ 1.92
CLN6-220ENST00000637450 SBNO1A3KN83 1393 aa27.02■■□□□ 1.92
CLN6-220ENST00000637450 GJD4Q96KN9 370 aaPredicted RBP27.02■■□□□ 1.92
CLN6-220ENST00000637450 TNS3Q68CZ2 1445 aa27.01■■□□□ 1.91
CLN6-220ENST00000637450 ANKARQ7Z5J8 1434 aa27.01■■□□□ 1.91
CLN6-220ENST00000637450 UNC5CLQ8IV45 518 aa27.01■■□□□ 1.91
CLN6-220ENST00000637450 PMFBP1Q8TBY8 1022 aa27.01■■□□□ 1.91
CLN6-220ENST00000637450 HIRIP3Q9BW71 556 aaPredicted RBP27.01■■□□□ 1.91
CLN6-220ENST00000637450 ATAD2Q6PL18 1390 aa27■■□□□ 1.91
CLN6-220ENST00000637450 MINK1Q8N4C8 1332 aaPredicted RBP26.99■■□□□ 1.91
CLN6-220ENST00000637450 CABLES1Q8TDN4 633 aa26.98■■□□□ 1.91
CLN6-220ENST00000637450 SLIT2O94813 1529 aa26.98■■□□□ 1.91
CLN6-220ENST00000637450 RGPD8O14715 1765 aaPredicted RBP26.98■■□□□ 1.91
CLN6-220ENST00000637450 MARF1Q9Y4F3 1742 aaKnown RBP26.97■■□□□ 1.91
CLN6-220ENST00000637450 LMOD2Q6P5Q4 547 aa26.97■■□□□ 1.91
CLN6-220ENST00000637450 ADGRB2O60241 1585 aa26.97■■□□□ 1.91
CLN6-220ENST00000637450 WASLO00401 505 aaPredicted RBP26.96■■□□□ 1.91
CLN6-220ENST00000637450 HAP1P54257 671 aaPredicted RBP26.96■■□□□ 1.91
CLN6-220ENST00000637450 ARHGEF10O15013 1369 aa26.96■■□□□ 1.91
CLN6-220ENST00000637450 PRR36Q9H6K5 1346 aa26.95■■□□□ 1.91
CLN6-220ENST00000637450 EIF3AQ14152 1382 aaKnown RBP26.94■■□□□ 1.9
CLN6-220ENST00000637450 USP32Q8NFA0 1604 aa26.94■■□□□ 1.9
CLN6-220ENST00000637450 PLEKHG5O94827 1062 aa26.93■■□□□ 1.9
CLN6-220ENST00000637450 RALGAPBQ86X10 1494 aa26.9■■□□□ 1.9
CLN6-220ENST00000637450 GPRASP1Q5JY77 1395 aa26.89■■□□□ 1.9
CLN6-220ENST00000637450 TULP4Q9NRJ4 1543 aa26.89■■□□□ 1.89
CLN6-220ENST00000637450 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.88■■□□□ 1.89
CLN6-220ENST00000637450 FAM83GA6ND36 823 aa26.88■■□□□ 1.89
CLN6-220ENST00000637450 VPS72Q15906 364 aa26.88■■□□□ 1.89
CLN6-220ENST00000637450 EP400Q96L91 3159 aa26.88■■□□□ 1.89
CLN6-220ENST00000637450 CCDC125Q86Z20 511 aa26.86■■□□□ 1.89
CLN6-220ENST00000637450 NGDNQ8NEJ9 315 aaKnown RBP26.86■■□□□ 1.89
CLN6-220ENST00000637450 GLI3P10071 1580 aa26.84■■□□□ 1.89
CLN6-220ENST00000637450 NUDT16Q96DE0 195 aaKnown RBP26.84■■□□□ 1.89
CLN6-220ENST00000637450 ONECUT3O60422 494 aaPredicted RBP26.82■■□□□ 1.88
CLN6-220ENST00000637450 SEPT12Q8IYM1 358 aa26.82■■□□□ 1.88
CLN6-220ENST00000637450 CDK19Q9BWU1 502 aa26.81■■□□□ 1.88
CLN6-220ENST00000637450 TRPM3Q9HCF6 1732 aaPredicted RBP26.8■■□□□ 1.88
CLN6-220ENST00000637450 CCDC9Q9Y3X0 531 aaKnown RBP26.8■■□□□ 1.88
CLN6-220ENST00000637450 PAK3O75914 559 aaPredicted RBP26.79■■□□□ 1.88
CLN6-220ENST00000637450 NBPF1Q3BBV0 1214 aa26.79■■□□□ 1.88
CLN6-220ENST00000637450 ARHGEF28Q8N1W1 1705 aaKnown RBP26.78■■□□□ 1.88
CLN6-220ENST00000637450 ABCA3Q99758 1704 aa26.77■■□□□ 1.88
CLN6-220ENST00000637450 ATP7BP35670 1465 aa26.77■■□□□ 1.88
CLN6-220ENST00000637450 BTG4Q9NY30 223 aa26.77■■□□□ 1.88
CLN6-220ENST00000637450 NWD2Q9ULI1 1742 aa26.76■■□□□ 1.87
CLN6-220ENST00000637450 ALS2Q96Q42 1657 aa26.76■■□□□ 1.87
CLN6-220ENST00000637450 SRCAPQ6ZRS2 3230 aa26.75■■□□□ 1.87
CLN6-220ENST00000637450 PLCH1Q4KWH8 1693 aa26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms