RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 TULP4Q9NRJ4 1543 aa26.26■■□□□ 1.79
CLN3-258ENST00000637184 CHD2O14647 1828 aaKnown RBP26.26■■□□□ 1.79
CLN3-258ENST00000637184 XRN1Q8IZH2 1706 aaKnown RBP26.25■■□□□ 1.79
CLN3-258ENST00000637184 PTCH1Q13635 1447 aa26.24■■□□□ 1.79
CLN3-258ENST00000637184 PUS7Q96PZ0 661 aaKnown RBP26.23■■□□□ 1.79
CLN3-258ENST00000637184 MIER1Q8N108 512 aa26.23■■□□□ 1.79
CLN3-258ENST00000637184 KCNA6P17658 529 aa26.2■■□□□ 1.79
CLN3-258ENST00000637184 MYOM1P52179 1685 aa26.2■■□□□ 1.78
CLN3-258ENST00000637184 ANP32CO43423 234 aa26.19■■□□□ 1.78
CLN3-258ENST00000637184 SRPK2P78362 688 aaKnown RBP26.19■■□□□ 1.78
CLN3-258ENST00000637184 CABP2Q9NPB3 220 aa26.18■■□□□ 1.78
CLN3-258ENST00000637184 CDK19Q9BWU1 502 aa26.18■■□□□ 1.78
CLN3-258ENST00000637184 STRCQ7RTU9 1775 aa26.17■■□□□ 1.78
CLN3-258ENST00000637184 PANK3Q9H999 370 aa26.17■■□□□ 1.78
CLN3-258ENST00000637184 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.15■■□□□ 1.78
CLN3-258ENST00000637184 WASLO00401 505 aaPredicted RBP26.14■■□□□ 1.78
CLN3-258ENST00000637184 ATAD2Q6PL18 1390 aa26.14■■□□□ 1.77
CLN3-258ENST00000637184 TMC1Q8TDI8 760 aa26.13■■□□□ 1.77
CLN3-258ENST00000637184 ADGRB2O60241 1585 aa26.13■■□□□ 1.77
CLN3-258ENST00000637184 NWD1Q149M9 1564 aa26.12■■□□□ 1.77
CLN3-258ENST00000637184 SLC12A5Q9H2X9 1139 aa26.1■■□□□ 1.77
CLN3-258ENST00000637184 NINLQ9Y2I6 1382 aa26.09■■□□□ 1.77
CLN3-258ENST00000637184 PER1O15534 1290 aaPredicted RBP26.08■■□□□ 1.77
CLN3-258ENST00000637184 KNSTRNQ9Y448 316 aa26.05■■□□□ 1.76
CLN3-258ENST00000637184 NKTRP30414 1462 aaKnown RBP26.04■■□□□ 1.76
CLN3-258ENST00000637184 PRKRIP1Q9H875 184 aaPredicted RBP26.04■■□□□ 1.76
CLN3-258ENST00000637184 NUDT16Q96DE0 195 aaKnown RBP26.02■■□□□ 1.76
CLN3-258ENST00000637184 ANKRD36BQ8N2N9 1353 aa26.02■■□□□ 1.76
CLN3-258ENST00000637184 CNGB1Q14028 1251 aaPredicted RBP26.01■■□□□ 1.75
CLN3-258ENST00000637184 PROSER2Q86WR7 435 aaPredicted RBP26.01■■□□□ 1.75
CLN3-258ENST00000637184 CABP1Q9NZU7 370 aa26■■□□□ 1.75
CLN3-258ENST00000637184 NALCNQ8IZF0 1738 aa26■■□□□ 1.75
CLN3-258ENST00000637184 RBM33Q96EV2 1170 aaKnown RBP26■■□□□ 1.75
CLN3-258ENST00000637184 DMRT2Q9Y5R5 561 aa26■■□□□ 1.75
CLN3-258ENST00000637184 CCDC61Q9Y6R9 512 aa26■■□□□ 1.75
CLN3-258ENST00000637184 STRCP1A6NGW2 1772 aa25.99■■□□□ 1.75
CLN3-258ENST00000637184 CARD14Q9BXL6 1004 aa25.99■■□□□ 1.75
CLN3-258ENST00000637184 TERF2IPQ9NYB0 399 aa25.99■■□□□ 1.75
CLN3-258ENST00000637184 ATP7BP35670 1465 aa25.99■■□□□ 1.75
CLN3-258ENST00000637184 ADGRL3Q9HAR2 1447 aa25.98■■□□□ 1.75
CLN3-258ENST00000637184 C14orf37Q86TY3 774 aa25.97■■□□□ 1.75
CLN3-258ENST00000637184 PPIP5K1Q6PFW1 1433 aa25.97■■□□□ 1.75
CLN3-258ENST00000637184 KTN1Q86UP2 1357 aaKnown RBP25.97■■□□□ 1.75
CLN3-258ENST00000637184 PRR36Q9H6K5 1346 aa25.97■■□□□ 1.75
CLN3-258ENST00000637184 CDC42BPGQ6DT37 1551 aa25.96■■□□□ 1.75
CLN3-258ENST00000637184 NUTM2FA1L443 756 aa25.95■■□□□ 1.75
CLN3-258ENST00000637184 HDGFL2Q7Z4V5 671 aaPredicted RBP25.95■■□□□ 1.75
CLN3-258ENST00000637184 A0A1W2PP64 1363 aa25.95■■□□□ 1.74
CLN3-258ENST00000637184 NSD3Q9BZ95 1437 aa25.95■■□□□ 1.74
CLN3-258ENST00000637184 CCER2I3L3R5 266 aa25.95■■□□□ 1.74
CLN3-258ENST00000637184 AMER1Q5JTC6 1135 aaPredicted RBP25.94■■□□□ 1.74
CLN3-258ENST00000637184 CC2D1BQ5T0F9 858 aaKnown RBP25.94■■□□□ 1.74
CLN3-258ENST00000637184 FMN2Q9NZ56 1722 aa25.94■■□□□ 1.74
CLN3-258ENST00000637184 CD163L1Q9NR16 1453 aa25.94■■□□□ 1.74
CLN3-258ENST00000637184 RALBP1Q15311 655 aa25.93■■□□□ 1.74
CLN3-258ENST00000637184 NPC1L1Q9UHC9 1359 aa25.92■■□□□ 1.74
CLN3-258ENST00000637184 TOPAZ1Q8N9V7 1692 aa25.92■■□□□ 1.74
CLN3-258ENST00000637184 USP32Q8NFA0 1604 aa25.92■■□□□ 1.74
CLN3-258ENST00000637184 ANKARQ7Z5J8 1434 aa25.91■■□□□ 1.74
CLN3-258ENST00000637184 ITSN1Q15811 1721 aa25.91■■□□□ 1.74
CLN3-258ENST00000637184 TMEM94Q12767 1356 aa25.9■■□□□ 1.74
CLN3-258ENST00000637184 NCOA3Q9Y6Q9 1424 aa25.9■■□□□ 1.74
CLN3-258ENST00000637184 PARD3Q8TEW0 1356 aa25.9■■□□□ 1.74
CLN3-258ENST00000637184 RGPD8O14715 1765 aaPredicted RBP25.9■■□□□ 1.74
CLN3-258ENST00000637184 ZNF335Q9H4Z2 1342 aaPredicted RBP25.89■■□□□ 1.73
CLN3-258ENST00000637184 C19orf44Q9H6X5 657 aa25.87■■□□□ 1.73
CLN3-258ENST00000637184 CGNL1Q0VF96 1302 aa25.87■■□□□ 1.73
CLN3-258ENST00000637184 CPSF1Q10570 1443 aaKnown RBP25.87■■□□□ 1.73
CLN3-258ENST00000637184 PLEKHG3A1L390 1219 aa25.87■■□□□ 1.73
CLN3-258ENST00000637184 ZNF692Q9BU19 519 aaPredicted RBP25.85■■□□□ 1.73
CLN3-258ENST00000637184 AKAP12Q02952 1782 aa25.84■■□□□ 1.73
CLN3-258ENST00000637184 MYBBP1AQ9BQG0 1328 aaKnown RBP25.84■■□□□ 1.73
CLN3-258ENST00000637184 ACEP12821 1306 aa25.82■■□□□ 1.72
CLN3-258ENST00000637184 MON2Q7Z3U7 1717 aa25.82■■□□□ 1.72
CLN3-258ENST00000637184 LRRC7Q96NW7 1537 aa25.81■■□□□ 1.72
CLN3-258ENST00000637184 NSD2O96028 1365 aa25.81■■□□□ 1.72
CLN3-258ENST00000637184 EDC4Q6P2E9 1401 aaKnown RBP25.8■■□□□ 1.72
CLN3-258ENST00000637184 AEBP2Q6ZN18 517 aaPredicted RBP25.8■■□□□ 1.72
CLN3-258ENST00000637184 PMFBP1Q8TBY8 1022 aa25.8■■□□□ 1.72
CLN3-258ENST00000637184 XIRP1Q702N8 1843 aaKnown RBP25.8■■□□□ 1.72
CLN3-258ENST00000637184 DCCP43146 1447 aa25.8■■□□□ 1.72
CLN3-258ENST00000637184 ATF3P18847 181 aa25.79■■□□□ 1.72
CLN3-258ENST00000637184 MSH6P52701 1360 aa25.79■■□□□ 1.72
CLN3-258ENST00000637184 NGDNQ8NEJ9 315 aaKnown RBP25.78■■□□□ 1.72
CLN3-258ENST00000637184 MRS2Q9HD23 443 aa25.77■■□□□ 1.72
CLN3-258ENST00000637184 POLR3AO14802 1390 aaPredicted RBP25.77■■□□□ 1.72
CLN3-258ENST00000637184 MORC1Q86VD1 984 aa25.77■■□□□ 1.72
CLN3-258ENST00000637184 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.77■■□□□ 1.72
CLN3-258ENST00000637184 KIF20BQ96Q89 1820 aa25.76■■□□□ 1.71
CLN3-258ENST00000637184 CCDC184Q52MB2 194 aa25.76■■□□□ 1.71
CLN3-258ENST00000637184 NLRP13Q86W25 1043 aa25.76■■□□□ 1.71
CLN3-258ENST00000637184 FYB1O15117 783 aa25.75■■□□□ 1.71
CLN3-258ENST00000637184 ESCO1Q5FWF5 840 aa25.75■■□□□ 1.71
CLN3-258ENST00000637184 CADPS2Q86UW7 1296 aa25.75■■□□□ 1.71
CLN3-258ENST00000637184 PHF8Q9UPP1 1060 aa25.75■■□□□ 1.71
CLN3-258ENST00000637184 USP6P35125 1406 aa25.75■■□□□ 1.71
CLN3-258ENST00000637184 BRD4O60885 1362 aaPredicted RBP25.73■■□□□ 1.71
CLN3-258ENST00000637184 GGNBP2Q9H3C7 697 aa25.73■■□□□ 1.71
CLN3-258ENST00000637184 ANKRD26Q9UPS8 1709 aa25.73■■□□□ 1.71
CLN3-258ENST00000637184 C1orf167Q5SNV9 1468 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms