RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 LRP5O75197 1615 aa17.2■□□□□ 0.34
CLN3-257ENST00000637110 SOS2Q07890 1332 aaPredicted RBP17.2■□□□□ 0.34
CLN3-257ENST00000637110 COL22A1Q8NFW1 1626 aaPredicted RBP17.19■□□□□ 0.34
CLN3-257ENST00000637110 BLMP54132 1417 aaPredicted RBP17.19■□□□□ 0.34
CLN3-257ENST00000637110 METP08581 1390 aa17.17■□□□□ 0.34
CLN3-257ENST00000637110 RAB3GAP2Q9H2M9 1393 aa17.17■□□□□ 0.34
CLN3-257ENST00000637110 CCDC144AA2RUR9 1427 aa17.17■□□□□ 0.34
CLN3-257ENST00000637110 VGFO15240 615 aaPredicted RBP17.17■□□□□ 0.34
CLN3-257ENST00000637110 MARF1Q9Y4F3 1742 aaKnown RBP17.16■□□□□ 0.34
CLN3-257ENST00000637110 SF3B2Q13435 895 aaKnown RBP17.16■□□□□ 0.34
CLN3-257ENST00000637110 RGL3Q3MIN7 710 aa17.16■□□□□ 0.34
CLN3-257ENST00000637110 GJD4Q96KN9 370 aaPredicted RBP17.16■□□□□ 0.34
CLN3-257ENST00000637110 NEXMIFQ5QGS0 1516 aa17.15■□□□□ 0.34
CLN3-257ENST00000637110 RPGRIP1LQ68CZ1 1315 aa17.15■□□□□ 0.34
CLN3-257ENST00000637110 BCL9LQ86UU0 1499 aa17.14■□□□□ 0.33
CLN3-257ENST00000637110 MYOM2P54296 1465 aa17.13■□□□□ 0.33
CLN3-257ENST00000637110 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.13■□□□□ 0.33
CLN3-257ENST00000637110 ORAI2Q96SN7 254 aa17.12■□□□□ 0.33
CLN3-257ENST00000637110 NPHP3Q7Z494 1330 aa17.1■□□□□ 0.33
CLN3-257ENST00000637110 DEFB132Q7Z7B7 95 aa17.09■□□□□ 0.33
CLN3-257ENST00000637110 BRWD3Q6RI45 1802 aa17.07■□□□□ 0.32
CLN3-257ENST00000637110 RALGAPBQ86X10 1494 aa17.07■□□□□ 0.32
CLN3-257ENST00000637110 UNC5CLQ8IV45 518 aa17.06■□□□□ 0.32
CLN3-257ENST00000637110 GLI3P10071 1580 aa17.06■□□□□ 0.32
CLN3-257ENST00000637110 PPLO60437 1756 aa17.05■□□□□ 0.32
CLN3-257ENST00000637110 LRPPRCP42704 1394 aaKnown RBP17.04■□□□□ 0.32
CLN3-257ENST00000637110 ADGRF5Q8IZF2 1346 aa17.04■□□□□ 0.32
CLN3-257ENST00000637110 PXDNQ92626 1479 aa17.04■□□□□ 0.32
CLN3-257ENST00000637110 ANKRD30BQ9BXX2 1392 aa17.03■□□□□ 0.32
CLN3-257ENST00000637110 ROBO2Q9HCK4 1378 aa17.03■□□□□ 0.32
CLN3-257ENST00000637110 HRCP23327 699 aa17.03■□□□□ 0.32
CLN3-257ENST00000637110 ESCO1Q5FWF5 840 aa17.03■□□□□ 0.32
CLN3-257ENST00000637110 SPATA31E1Q6ZUB1 1445 aa17.03■□□□□ 0.32
CLN3-257ENST00000637110 SLIT2O94813 1529 aa17.02■□□□□ 0.32
CLN3-257ENST00000637110 PRAG1Q86YV5 1406 aa17.02■□□□□ 0.31
CLN3-257ENST00000637110 BAG6P46379 1132 aa17.01■□□□□ 0.31
CLN3-257ENST00000637110 SEPT12Q8IYM1 358 aa17.01■□□□□ 0.31
CLN3-257ENST00000637110 STK26Q9P289 416 aa17.01■□□□□ 0.31
CLN3-257ENST00000637110 CDC42BPGQ6DT37 1551 aa17.01■□□□□ 0.31
CLN3-257ENST00000637110 PSDA5PKW4 1024 aaPredicted RBP17■□□□□ 0.31
CLN3-257ENST00000637110 FOXO3O43524 673 aa16.99■□□□□ 0.31
CLN3-257ENST00000637110 XPCQ01831 940 aaPredicted RBP16.98■□□□□ 0.31
CLN3-257ENST00000637110 KRT27Q7Z3Y8 459 aa16.98■□□□□ 0.31
CLN3-257ENST00000637110 USP32Q8NFA0 1604 aa16.97■□□□□ 0.31
CLN3-257ENST00000637110 TMEM132EQ6IEE7 984 aa16.97■□□□□ 0.31
CLN3-257ENST00000637110 KDM2AQ9Y2K7 1162 aa16.97■□□□□ 0.31
CLN3-257ENST00000637110 HAP1P54257 671 aaPredicted RBP16.96■□□□□ 0.31
CLN3-257ENST00000637110 VPS72Q15906 364 aa16.96■□□□□ 0.31
CLN3-257ENST00000637110 CCDC9Q9Y3X0 531 aaKnown RBP16.96■□□□□ 0.31
CLN3-257ENST00000637110 IFT172Q9UG01 1749 aa16.95■□□□□ 0.3
CLN3-257ENST00000637110 NWD2Q9ULI1 1742 aa16.95■□□□□ 0.3
CLN3-257ENST00000637110 ONECUT3O60422 494 aaPredicted RBP16.94■□□□□ 0.3
CLN3-257ENST00000637110 CFAP70Q5T0N1 1121 aa16.93■□□□□ 0.3
CLN3-257ENST00000637110 DCAF11Q8TEB1 546 aa16.93■□□□□ 0.3
CLN3-257ENST00000637110 SPATA31A3Q5VYP0 1347 aa16.93■□□□□ 0.3
CLN3-257ENST00000637110 KIF1AQ12756 1690 aa16.92■□□□□ 0.3
CLN3-257ENST00000637110 PLCH1Q4KWH8 1693 aa16.92■□□□□ 0.3
CLN3-257ENST00000637110 A0A0G2JS52 829 aa16.92■□□□□ 0.3
CLN3-257ENST00000637110 MYT1Q01538 1121 aa16.92■□□□□ 0.3
CLN3-257ENST00000637110 PIK3C2GO75747 1445 aa16.92■□□□□ 0.3
CLN3-257ENST00000637110 RGPD1P0DJD0 1748 aa16.92■□□□□ 0.3
CLN3-257ENST00000637110 YY1P25490 414 aa16.91■□□□□ 0.3
CLN3-257ENST00000637110 WAPLQ7Z5K2 1190 aa16.91■□□□□ 0.3
CLN3-257ENST00000637110 C14orf93Q9H972 538 aaKnown RBP16.91■□□□□ 0.3
CLN3-257ENST00000637110 DHX57Q6P158 1386 aaKnown RBP16.89■□□□□ 0.3
CLN3-257ENST00000637110 R3HDM1Q15032 1099 aaKnown RBP16.89■□□□□ 0.29
CLN3-257ENST00000637110 YTHDC2Q9H6S0 1430 aaKnown RBP16.87■□□□□ 0.29
CLN3-257ENST00000637110 NUTM2FA1L443 756 aa16.87■□□□□ 0.29
CLN3-257ENST00000637110 EN1Q05925 392 aaPredicted RBP16.87■□□□□ 0.29
CLN3-257ENST00000637110 ABCC11Q96J66 1382 aa16.87■□□□□ 0.29
CLN3-257ENST00000637110 PSME1Q06323 249 aa16.86■□□□□ 0.29
CLN3-257ENST00000637110 KRT28Q7Z3Y7 464 aa16.86■□□□□ 0.29
CLN3-257ENST00000637110 TNS3Q68CZ2 1445 aa16.86■□□□□ 0.29
CLN3-257ENST00000637110 SAFB2Q14151 953 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLN3-257ENST00000637110 POGKQ9P215 609 aa16.85■□□□□ 0.29
CLN3-257ENST00000637110 DISP2A7MBM2 1401 aa16.85■□□□□ 0.29
CLN3-257ENST00000637110 NRXN1Q9ULB1 1477 aa16.85■□□□□ 0.29
CLN3-257ENST00000637110 FMN2Q9NZ56 1722 aa16.84■□□□□ 0.29
CLN3-257ENST00000637110 STAC3Q96MF2 364 aa16.84■□□□□ 0.29
CLN3-257ENST00000637110 PLEKHH1Q9ULM0 1364 aa16.84■□□□□ 0.29
CLN3-257ENST00000637110 TECPR2O15040 1411 aa16.84■□□□□ 0.29
CLN3-257ENST00000637110 DCAF8L1A6NGE4 600 aa16.83■□□□□ 0.28
CLN3-257ENST00000637110 FAM98CQ17RN3 349 aaKnown RBP16.83■□□□□ 0.28
CLN3-257ENST00000637110 ABCA3Q99758 1704 aa16.83■□□□□ 0.28
CLN3-257ENST00000637110 ADGRB2O60241 1585 aa16.82■□□□□ 0.28
CLN3-257ENST00000637110 ARHGEF10O15013 1369 aa16.82■□□□□ 0.28
CLN3-257ENST00000637110 CABLES1Q8TDN4 633 aa16.82■□□□□ 0.28
CLN3-257ENST00000637110 SIRT1Q96EB6 747 aa16.82■□□□□ 0.28
CLN3-257ENST00000637110 PRAM1Q96QH2 718 aa16.82■□□□□ 0.28
CLN3-257ENST00000637110 TRAK1Q9UPV9 953 aa16.82■□□□□ 0.28
CLN3-257ENST00000637110 KNDC1Q76NI1 1749 aa16.82■□□□□ 0.28
CLN3-257ENST00000637110 TNS1Q9HBL0 1735 aaKnown RBP16.81■□□□□ 0.28
CLN3-257ENST00000637110 SBNO1A3KN83 1393 aa16.8■□□□□ 0.28
CLN3-257ENST00000637110 NRAPQ86VF7 1730 aa16.8■□□□□ 0.28
CLN3-257ENST00000637110 PLEKHG5O94827 1062 aa16.8■□□□□ 0.28
CLN3-257ENST00000637110 LMOD2Q6P5Q4 547 aa16.8■□□□□ 0.28
CLN3-257ENST00000637110 NEUROD1Q13562 356 aa16.79■□□□□ 0.28
CLN3-257ENST00000637110 FAM83GA6ND36 823 aa16.78■□□□□ 0.28
CLN3-257ENST00000637110 TRIM26Q12899 539 aaPredicted RBP16.78■□□□□ 0.28
CLN3-257ENST00000637110 PHF8Q9UPP1 1060 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms