RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 IRX6P78412 446 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-214ENST00000637038 USP32Q8NFA0 1604 aa5.31□□□□□ -1.56
SCN1A-214ENST00000637038 ZNF777Q9ULD5 760 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-214ENST00000637038 NUDCQ9Y266 331 aa5.31□□□□□ -1.56
SCN1A-214ENST00000637038 CEP170BQ9Y4F5 1589 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-214ENST00000637038 ZNF335Q9H4Z2 1342 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-214ENST00000637038 C14orf37Q86TY3 774 aa5.3□□□□□ -1.56
SCN1A-214ENST00000637038 ANKRD50Q9ULJ7 1429 aa5.3□□□□□ -1.56
SCN1A-214ENST00000637038 FRMPD1Q5SYB0 1578 aa5.3□□□□□ -1.56
SCN1A-214ENST00000637038 INSRP06213 1382 aa5.3□□□□□ -1.56
SCN1A-214ENST00000637038 RALBP1Q15311 655 aa5.3□□□□□ -1.56
SCN1A-214ENST00000637038 LRRC59Q96AG4 307 aaKnown RBP5.3□□□□□ -1.56
SCN1A-214ENST00000637038 SPAG9O60271 1321 aaKnown RBP5.3□□□□□ -1.56
SCN1A-214ENST00000637038 CNKSR2Q8WXI2 1034 aa5.3□□□□□ -1.56
SCN1A-214ENST00000637038 USP47Q96K76 1375 aa5.3□□□□□ -1.56
SCN1A-214ENST00000637038 SETD1AO15047 1707 aaKnown RBP5.3□□□□□ -1.56
SCN1A-214ENST00000637038 PER1O15534 1290 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-214ENST00000637038 ZMYM3Q14202 1370 aa5.29□□□□□ -1.56
SCN1A-214ENST00000637038 KIF15Q9NS87 1388 aa5.29□□□□□ -1.56
SCN1A-214ENST00000637038 CARD11Q9BXL7 1154 aa5.29□□□□□ -1.56
SCN1A-214ENST00000637038 NCKAP5LQ9HCH0 1330 aa5.29□□□□□ -1.56
SCN1A-214ENST00000637038 ATP7AQ04656 1500 aa5.29□□□□□ -1.56
SCN1A-214ENST00000637038 MED14O60244 1454 aa5.29□□□□□ -1.56
SCN1A-214ENST00000637038 NKTRP30414 1462 aaKnown RBP5.29□□□□□ -1.56
SCN1A-214ENST00000637038 KANK1Q14678 1352 aa5.28□□□□□ -1.56
SCN1A-214ENST00000637038 PROSER2Q86WR7 435 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-214ENST00000637038 LRP5O75197 1615 aa5.28□□□□□ -1.56
SCN1A-214ENST00000637038 ANKRD26Q9UPS8 1709 aa5.28□□□□□ -1.56
SCN1A-214ENST00000637038 PDE3BQ13370 1112 aa5.28□□□□□ -1.56
SCN1A-214ENST00000637038 PKNOX2Q96KN3 472 aa5.28□□□□□ -1.56
SCN1A-214ENST00000637038 NOP58Q9Y2X3 529 aaKnown RBP5.28□□□□□ -1.56
SCN1A-214ENST00000637038 MYO5BQ9ULV0 1848 aa5.28□□□□□ -1.56
SCN1A-214ENST00000637038 PTCH1Q13635 1447 aa5.28□□□□□ -1.56
SCN1A-214ENST00000637038 ARHGEF28Q8N1W1 1705 aaKnown RBP5.28□□□□□ -1.56
SCN1A-214ENST00000637038 KCNA6P17658 529 aa5.27□□□□□ -1.57
SCN1A-214ENST00000637038 B4GALNT3Q6L9W6 998 aa5.27□□□□□ -1.57
SCN1A-214ENST00000637038 NUP155O75694 1391 aa5.27□□□□□ -1.57
SCN1A-214ENST00000637038 RTEL1-TNFRSF6BF6WH68 1400 aa5.27□□□□□ -1.57
SCN1A-214ENST00000637038 KIF1BO60333 1816 aa5.27□□□□□ -1.57
SCN1A-214ENST00000637038 TESK2Q96S53 571 aa5.27□□□□□ -1.57
SCN1A-214ENST00000637038 MYBBP1AQ9BQG0 1328 aaKnown RBP5.27□□□□□ -1.57
SCN1A-214ENST00000637038 BRD4O60885 1362 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-214ENST00000637038 ERBINQ96RT1 1412 aa5.26□□□□□ -1.57
SCN1A-214ENST00000637038 RICTORQ6R327 1708 aa5.26□□□□□ -1.57
SCN1A-214ENST00000637038 PNISRQ8TF01 805 aaKnown RBP5.26□□□□□ -1.57
SCN1A-214ENST00000637038 ZBTB47Q9UFB7 747 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-214ENST00000637038 LMTK2Q8IWU2 1503 aa5.26□□□□□ -1.57
SCN1A-214ENST00000637038 ADGRB1O14514 1584 aa5.26□□□□□ -1.57
SCN1A-214ENST00000637038 KDM5AP29375 1690 aaKnown RBP5.26□□□□□ -1.57
SCN1A-214ENST00000637038 CLTCQ00610 1675 aaKnown RBP5.26□□□□□ -1.57
SCN1A-214ENST00000637038 ARHGAP5Q13017 1502 aa5.26□□□□□ -1.57
SCN1A-214ENST00000637038 GIGYF1O75420 1035 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-214ENST00000637038 CNGB1Q14028 1251 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-214ENST00000637038 PIK3R4Q99570 1358 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 SETBP1Q9Y6X0 1596 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 NLRP13Q86W25 1043 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 ARHGAP23Q9P227 1491 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 ADGRB3O60242 1522 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 LRRC7Q96NW7 1537 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 STRCQ7RTU9 1775 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 QRICH2Q9H0J4 1663 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 EFCAB6Q5THR3 1501 aa5.25□□□□□ -1.57
SCN1A-214ENST00000637038 TCERG1O14776 1098 aaKnown RBP5.25□□□□□ -1.57
SCN1A-214ENST00000637038 NHSL1Q5SYE7 1610 aa5.24□□□□□ -1.57
SCN1A-214ENST00000637038 ADGRB2O60241 1585 aa5.24□□□□□ -1.57
SCN1A-214ENST00000637038 ZNF521Q96K83 1311 aa5.24□□□□□ -1.57
SCN1A-214ENST00000637038 WASHC2CQ9Y4E1 1318 aa5.24□□□□□ -1.57
SCN1A-214ENST00000637038 ZBTB22O15209 634 aa5.24□□□□□ -1.57
SCN1A-214ENST00000637038 PDIA4P13667 645 aaKnown RBP5.24□□□□□ -1.57
SCN1A-214ENST00000637038 CDCA8Q53HL2 280 aa5.24□□□□□ -1.57
SCN1A-214ENST00000637038 DDRGK1Q96HY6 314 aa5.24□□□□□ -1.57
SCN1A-214ENST00000637038 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-214ENST00000637038 KDM2AQ9Y2K7 1162 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 MYOM2P54296 1465 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 UGGT1Q9NYU2 1555 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 TULP1O00294 542 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-214ENST00000637038 QTRT2Q9H974 415 aaKnown RBP5.23□□□□□ -1.57
SCN1A-214ENST00000637038 SPON1Q9HCB6 807 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 POTEAQ6S8J7 498 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 DCAF11Q8TEB1 546 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 IPO9Q96P70 1041 aaKnown RBP5.23□□□□□ -1.57
SCN1A-214ENST00000637038 CCDC144AA2RUR9 1427 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 DIP2CQ9Y2E4 1556 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 TUBGCP6Q96RT7 1819 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 FAM83GA6ND36 823 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 RCAN3Q9UKA8 241 aa5.23□□□□□ -1.57
SCN1A-214ENST00000637038 DCCP43146 1447 aa5.22□□□□□ -1.57
SCN1A-214ENST00000637038 ASXL1Q8IXJ9 1541 aa5.22□□□□□ -1.57
SCN1A-214ENST00000637038 MS4A1P11836 297 aa5.22□□□□□ -1.57
SCN1A-214ENST00000637038 PPM1GO15355 546 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-214ENST00000637038 GRIN3BO60391 1043 aa5.22□□□□□ -1.57
SCN1A-214ENST00000637038 TMF1P82094 1093 aa5.22□□□□□ -1.57
SCN1A-214ENST00000637038 RRP1P56182 461 aaKnown RBP5.22□□□□□ -1.57
SCN1A-214ENST00000637038 ERVK-7P63135 1459 aa5.22□□□□□ -1.57
SCN1A-214ENST00000637038 SCAF11Q99590 1463 aaKnown RBP5.21□□□□□ -1.57
SCN1A-214ENST00000637038 C3P01024 1663 aa5.21□□□□□ -1.58
SCN1A-214ENST00000637038 ST20-MTHFSA0A0A6YYL1 179 aa5.21□□□□□ -1.58
SCN1A-214ENST00000637038 CEBPAP49715 358 aaPredicted RBP5.21□□□□□ -1.58
SCN1A-214ENST00000637038 WDR43Q15061 677 aaKnown RBP eCLIP5.21□□□□□ -1.58
SCN1A-214ENST00000637038 STAC3Q96MF2 364 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms