RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 POGKQ9P215 609 aa20.84■□□□□ 0.93
CLN3-251ENST00000636853 MINK1Q8N4C8 1332 aaPredicted RBP20.84■□□□□ 0.93
CLN3-251ENST00000636853 RNF123Q5XPI4 1314 aa20.83■□□□□ 0.93
CLN3-251ENST00000636853 PDE3BQ13370 1112 aa20.83■□□□□ 0.93
CLN3-251ENST00000636853 PPP4R2Q9NY27 417 aa20.83■□□□□ 0.93
CLN3-251ENST00000636853 SRPK2P78362 688 aaKnown RBP20.83■□□□□ 0.92
CLN3-251ENST00000636853 TNNT2P45379 298 aaPredicted RBP20.81■□□□□ 0.92
CLN3-251ENST00000636853 MORC1Q86VD1 984 aa20.81■□□□□ 0.92
CLN3-251ENST00000636853 ANP32EQ9BTT0 268 aa20.8■□□□□ 0.92
CLN3-251ENST00000636853 ANKRD36BQ8N2N9 1353 aa20.8■□□□□ 0.92
CLN3-251ENST00000636853 TNRQ92752 1358 aa20.78■□□□□ 0.92
CLN3-251ENST00000636853 CGNL1Q0VF96 1302 aa20.78■□□□□ 0.92
CLN3-251ENST00000636853 USP32Q8NFA0 1604 aa20.77■□□□□ 0.92
CLN3-251ENST00000636853 SETD1AO15047 1707 aaKnown RBP20.77■□□□□ 0.92
CLN3-251ENST00000636853 CCDC146Q8IYE0 955 aa20.77■□□□□ 0.92
CLN3-251ENST00000636853 B4GALNT3Q6L9W6 998 aa20.76■□□□□ 0.91
CLN3-251ENST00000636853 WAPLQ7Z5K2 1190 aa20.75■□□□□ 0.91
CLN3-251ENST00000636853 RCAN3Q9UKA8 241 aa20.75■□□□□ 0.91
CLN3-251ENST00000636853 PLEKHH1Q9ULM0 1364 aa20.75■□□□□ 0.91
CLN3-251ENST00000636853 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.75■□□□□ 0.91
CLN3-251ENST00000636853 NRXN3Q9Y4C0 1643 aa20.74■□□□□ 0.91
CLN3-251ENST00000636853 A0A1W2PP64 1363 aa20.74■□□□□ 0.91
CLN3-251ENST00000636853 CDK19Q9BWU1 502 aa20.74■□□□□ 0.91
CLN3-251ENST00000636853 POLR3AO14802 1390 aaPredicted RBP20.73■□□□□ 0.91
CLN3-251ENST00000636853 ATAD2Q6PL18 1390 aa20.73■□□□□ 0.91
CLN3-251ENST00000636853 NINLQ9Y2I6 1382 aa20.72■□□□□ 0.91
CLN3-251ENST00000636853 TRHP20396 242 aaPredicted RBP20.71■□□□□ 0.91
CLN3-251ENST00000636853 CEBPAP49715 358 aaPredicted RBP20.71■□□□□ 0.91
CLN3-251ENST00000636853 METP08581 1390 aa20.71■□□□□ 0.91
CLN3-251ENST00000636853 DLC1Q96QB1 1528 aa20.71■□□□□ 0.91
CLN3-251ENST00000636853 RRP1P56182 461 aaKnown RBP20.7■□□□□ 0.9
CLN3-251ENST00000636853 UBR1Q8IWV7 1749 aa20.7■□□□□ 0.9
CLN3-251ENST00000636853 APAF1O14727 1248 aa20.7■□□□□ 0.9
CLN3-251ENST00000636853 ABCC11Q96J66 1382 aa20.69■□□□□ 0.9
CLN3-251ENST00000636853 MTHFSP49914 203 aa20.69■□□□□ 0.9
CLN3-251ENST00000636853 HDGFP51858 240 aaKnown RBP20.69■□□□□ 0.9
CLN3-251ENST00000636853 NSD2O96028 1365 aa20.68■□□□□ 0.9
CLN3-251ENST00000636853 ZNF521Q96K83 1311 aa20.68■□□□□ 0.9
CLN3-251ENST00000636853 CD163L1Q9NR16 1453 aa20.68■□□□□ 0.9
CLN3-251ENST00000636853 TERF2IPQ9NYB0 399 aa20.68■□□□□ 0.9
CLN3-251ENST00000636853 TMEM2Q9UHN6 1383 aa20.68■□□□□ 0.9
CLN3-251ENST00000636853 PLPPR3Q6T4P5 718 aa20.67■□□□□ 0.9
CLN3-251ENST00000636853 SHPRHQ149N8 1683 aa20.67■□□□□ 0.9
CLN3-251ENST00000636853 CABP1Q9NZU7 370 aa20.67■□□□□ 0.9
CLN3-251ENST00000636853 TXNDC2Q86VQ3 553 aa20.66■□□□□ 0.9
CLN3-251ENST00000636853 GGNBP2Q9H3C7 697 aa20.66■□□□□ 0.9
CLN3-251ENST00000636853 GOLGA2Q08379 1002 aa20.65■□□□□ 0.9
CLN3-251ENST00000636853 DUSP27Q5VZP5 1158 aa20.64■□□□□ 0.89
CLN3-251ENST00000636853 HDGFL2Q7Z4V5 671 aaPredicted RBP20.64■□□□□ 0.89
CLN3-251ENST00000636853 FYB1O15117 783 aa20.62■□□□□ 0.89
CLN3-251ENST00000636853 CFAP53Q96M91 514 aa20.62■□□□□ 0.89
CLN3-251ENST00000636853 C3P01024 1663 aa20.62■□□□□ 0.89
CLN3-251ENST00000636853 LTKP29376 864 aa20.61■□□□□ 0.89
CLN3-251ENST00000636853 PLIN1O60240 522 aa20.6■□□□□ 0.89
CLN3-251ENST00000636853 CCDC136Q96JN2 1154 aa20.6■□□□□ 0.89
CLN3-251ENST00000636853 NLRP1Q9C000 1473 aa20.6■□□□□ 0.89
CLN3-251ENST00000636853 SLFN5Q08AF3 891 aa20.6■□□□□ 0.89
CLN3-251ENST00000636853 WASLO00401 505 aaPredicted RBP20.59■□□□□ 0.89
CLN3-251ENST00000636853 EXOC6Q8TAG9 804 aa20.59■□□□□ 0.89
CLN3-251ENST00000636853 SPINK5Q9NQ38 1064 aaPredicted RBP20.59■□□□□ 0.89
CLN3-251ENST00000636853 FER1L4A9Z1Z3 1794 aa20.59■□□□□ 0.89
CLN3-251ENST00000636853 KNDC1Q76NI1 1749 aa20.58■□□□□ 0.89
CLN3-251ENST00000636853 ADAMTS13Q76LX8 1427 aa20.58■□□□□ 0.88
CLN3-251ENST00000636853 ANKRD26Q9UPS8 1709 aa20.58■□□□□ 0.88
CLN3-251ENST00000636853 TECPR2O15040 1411 aa20.56■□□□□ 0.88
CLN3-251ENST00000636853 FAM135BQ49AJ0 1406 aa20.56■□□□□ 0.88
CLN3-251ENST00000636853 RUNDC1Q96C34 613 aa20.56■□□□□ 0.88
CLN3-251ENST00000636853 DMRT2Q9Y5R5 561 aa20.56■□□□□ 0.88
CLN3-251ENST00000636853 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.56■□□□□ 0.88
CLN3-251ENST00000636853 NEUROD2Q15784 382 aa20.55■□□□□ 0.88
CLN3-251ENST00000636853 TRMT2AQ8IZ69 625 aaKnown RBP20.55■□□□□ 0.88
CLN3-251ENST00000636853 SIRT1Q96EB6 747 aa20.55■□□□□ 0.88
CLN3-251ENST00000636853 PLEKHG1Q9ULL1 1385 aa20.55■□□□□ 0.88
CLN3-251ENST00000636853 CPS1P31327 1500 aa20.55■□□□□ 0.88
CLN3-251ENST00000636853 RRP7AQ9Y3A4 280 aaKnown RBP20.55■□□□□ 0.88
CLN3-251ENST00000636853 MED14O60244 1454 aa20.55■□□□□ 0.88
CLN3-251ENST00000636853 ATP7BP35670 1465 aa20.55■□□□□ 0.88
CLN3-251ENST00000636853 KIF20BQ96Q89 1820 aa20.54■□□□□ 0.88
CLN3-251ENST00000636853 ROBO2Q9HCK4 1378 aa20.54■□□□□ 0.88
CLN3-251ENST00000636853 NCKAP5LQ9HCH0 1330 aa20.54■□□□□ 0.88
CLN3-251ENST00000636853 U2AF1L5P0DN76 240 aaPredicted RBP20.53■□□□□ 0.88
CLN3-251ENST00000636853 U2AF1Q01081 240 aaKnown RBP eCLIP20.53■□□□□ 0.88
CLN3-251ENST00000636853 WWC1Q8IX03 1113 aa20.53■□□□□ 0.88
CLN3-251ENST00000636853 NGEFQ8N5V2 710 aa20.53■□□□□ 0.88
CLN3-251ENST00000636853 SLC26A8Q96RN1 970 aa20.53■□□□□ 0.88
CLN3-251ENST00000636853 PPIP5K1Q6PFW1 1433 aa20.53■□□□□ 0.88
CLN3-251ENST00000636853 TCP11L2Q8N4U5 519 aa20.53■□□□□ 0.88
CLN3-251ENST00000636853 NUDT16Q96DE0 195 aaKnown RBP20.53■□□□□ 0.88
CLN3-251ENST00000636853 RBM19Q9Y4C8 960 aaKnown RBP20.52■□□□□ 0.88
CLN3-251ENST00000636853 EID1Q9Y6B2 187 aa20.52■□□□□ 0.88
CLN3-251ENST00000636853 E9PSI1 815 aa20.52■□□□□ 0.88
CLN3-251ENST00000636853 IQSEC2Q5JU85 1478 aa20.51■□□□□ 0.87
CLN3-251ENST00000636853 U2SURPO15042 1029 aaKnown RBP20.49■□□□□ 0.87
CLN3-251ENST00000636853 CPSF1Q10570 1443 aaKnown RBP20.49■□□□□ 0.87
CLN3-251ENST00000636853 COL3A1P02461 1466 aaPredicted RBP20.49■□□□□ 0.87
CLN3-251ENST00000636853 NKTRP30414 1462 aaKnown RBP20.49■□□□□ 0.87
CLN3-251ENST00000636853 FBLN1P23142 703 aa20.48■□□□□ 0.87
CLN3-251ENST00000636853 C20orf194Q5TEA3 1177 aa20.48■□□□□ 0.87
CLN3-251ENST00000636853 CRBNQ96SW2 442 aa20.48■□□□□ 0.87
CLN3-251ENST00000636853 CCDC61Q9Y6R9 512 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms