RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 RALGAPBQ86X10 1494 aa29.05■■■□□ 2.24
PTCD3-220ENST00000627371 ILDR1Q86SU0 546 aaPredicted RBP29.05■■■□□ 2.24
PTCD3-220ENST00000627371 ATF3P18847 181 aa29.04■■■□□ 2.24
PTCD3-220ENST00000627371 ROCK2O75116 1388 aaKnown RBP29.03■■■□□ 2.24
PTCD3-220ENST00000627371 PRAM1Q96QH2 718 aa29.03■■■□□ 2.24
PTCD3-220ENST00000627371 PIP4K2BP78356 416 aa29.02■■■□□ 2.24
PTCD3-220ENST00000627371 GPRASP1Q5JY77 1395 aa29.01■■■□□ 2.24
PTCD3-220ENST00000627371 ROBO1Q9Y6N7 1651 aa29.01■■■□□ 2.23
PTCD3-220ENST00000627371 ADGRB2O60241 1585 aa29.01■■■□□ 2.23
PTCD3-220ENST00000627371 POGKQ9P215 609 aa29■■■□□ 2.23
PTCD3-220ENST00000627371 SCAF1Q9H7N4 1312 aaKnown RBP28.99■■■□□ 2.23
PTCD3-220ENST00000627371 MST1RQ04912 1400 aa28.99■■■□□ 2.23
PTCD3-220ENST00000627371 SLAIN2Q9P270 581 aa28.98■■■□□ 2.23
PTCD3-220ENST00000627371 FMN2Q9NZ56 1722 aa28.97■■■□□ 2.23
PTCD3-220ENST00000627371 SAFB2Q14151 953 aaKnown RBP eCLIP28.95■■■□□ 2.22
PTCD3-220ENST00000627371 QRICH2Q9H0J4 1663 aa28.94■■■□□ 2.22
PTCD3-220ENST00000627371 C1orf167Q5SNV9 1468 aa28.9■■■□□ 2.22
PTCD3-220ENST00000627371 CARD11Q9BXL7 1154 aa28.89■■■□□ 2.22
PTCD3-220ENST00000627371 EIF3AQ14152 1382 aaKnown RBP28.88■■■□□ 2.21
PTCD3-220ENST00000627371 MINK1Q8N4C8 1332 aaPredicted RBP28.88■■■□□ 2.21
PTCD3-220ENST00000627371 CENPJQ9HC77 1338 aaPredicted RBP28.88■■■□□ 2.21
PTCD3-220ENST00000627371 RGPD8O14715 1765 aaPredicted RBP28.88■■■□□ 2.21
PTCD3-220ENST00000627371 HIRIP3Q9BW71 556 aaPredicted RBP28.84■■■□□ 2.21
PTCD3-220ENST00000627371 NHSL1Q5SYE7 1610 aa28.83■■■□□ 2.21
PTCD3-220ENST00000627371 USP32Q8NFA0 1604 aa28.83■■■□□ 2.21
PTCD3-220ENST00000627371 BRINP3Q76B58 766 aa28.83■■■□□ 2.21
PTCD3-220ENST00000627371 AHDC1Q5TGY3 1603 aaPredicted RBP28.83■■■□□ 2.21
PTCD3-220ENST00000627371 PHLPP1O60346 1717 aa28.83■■■□□ 2.21
PTCD3-220ENST00000627371 TULP4Q9NRJ4 1543 aa28.81■■■□□ 2.2
PTCD3-220ENST00000627371 HSPA1LP34931 641 aa28.81■■■□□ 2.2
PTCD3-220ENST00000627371 ANKARQ7Z5J8 1434 aa28.8■■■□□ 2.2
PTCD3-220ENST00000627371 WASLO00401 505 aaPredicted RBP28.79■■■□□ 2.2
PTCD3-220ENST00000627371 KIF1AQ12756 1690 aa28.79■■■□□ 2.2
PTCD3-220ENST00000627371 NUTM2FA1L443 756 aa28.78■■■□□ 2.2
PTCD3-220ENST00000627371 ITSN1Q15811 1721 aa28.77■■■□□ 2.2
PTCD3-220ENST00000627371 ORAI2Q96SN7 254 aa28.77■■■□□ 2.2
PTCD3-220ENST00000627371 COL16A1Q07092 1604 aaPredicted RBP28.76■■■□□ 2.2
PTCD3-220ENST00000627371 SBNO2Q9Y2G9 1366 aa28.75■■■□□ 2.19
PTCD3-220ENST00000627371 ESCO1Q5FWF5 840 aa28.74■■■□□ 2.19
PTCD3-220ENST00000627371 TOPAZ1Q8N9V7 1692 aa28.73■■■□□ 2.19
PTCD3-220ENST00000627371 ATP7BP35670 1465 aa28.72■■■□□ 2.19
PTCD3-220ENST00000627371 CDK19Q9BWU1 502 aa28.71■■■□□ 2.19
PTCD3-220ENST00000627371 USP47Q96K76 1375 aa28.71■■■□□ 2.19
PTCD3-220ENST00000627371 PRR36Q9H6K5 1346 aa28.7■■■□□ 2.19
PTCD3-220ENST00000627371 EVC2Q86UK5 1308 aa28.67■■■□□ 2.18
PTCD3-220ENST00000627371 DDX17Q92841 729 aaKnown RBP28.65■■■□□ 2.18
PTCD3-220ENST00000627371 NUDT16Q96DE0 195 aaKnown RBP28.65■■■□□ 2.18
PTCD3-220ENST00000627371 PHF8Q9UPP1 1060 aa28.65■■■□□ 2.18
PTCD3-220ENST00000627371 ST20-MTHFSA0A0A6YYL1 179 aa28.64■■■□□ 2.18
PTCD3-220ENST00000627371 NPHP3Q7Z494 1330 aa28.64■■■□□ 2.17
PTCD3-220ENST00000627371 SRPK2P78362 688 aaKnown RBP28.63■■■□□ 2.17
PTCD3-220ENST00000627371 PXDNQ92626 1479 aa28.63■■■□□ 2.17
PTCD3-220ENST00000627371 SHPRHQ149N8 1683 aa28.62■■■□□ 2.17
PTCD3-220ENST00000627371 SOS2Q07890 1332 aaPredicted RBP28.62■■■□□ 2.17
PTCD3-220ENST00000627371 FOXO3O43524 673 aa28.61■■■□□ 2.17
PTCD3-220ENST00000627371 TESK2Q96S53 571 aa28.61■■■□□ 2.17
PTCD3-220ENST00000627371 CABP2Q9NPB3 220 aa28.61■■■□□ 2.17
PTCD3-220ENST00000627371 CCDC61Q9Y6R9 512 aa28.59■■■□□ 2.17
PTCD3-220ENST00000627371 PMFBP1Q8TBY8 1022 aa28.58■■■□□ 2.17
PTCD3-220ENST00000627371 JCADQ9P266 1359 aa28.58■■■□□ 2.17
PTCD3-220ENST00000627371 SLC24A1O60721 1099 aa28.56■■■□□ 2.16
PTCD3-220ENST00000627371 PPIP5K1Q6PFW1 1433 aa28.55■■■□□ 2.16
PTCD3-220ENST00000627371 LRRC59Q96AG4 307 aaKnown RBP28.55■■■□□ 2.16
PTCD3-220ENST00000627371 TRPM3Q9HCF6 1732 aaPredicted RBP28.55■■■□□ 2.16
PTCD3-220ENST00000627371 ATAD2Q6PL18 1390 aa28.54■■■□□ 2.16
PTCD3-220ENST00000627371 XPCQ01831 940 aaPredicted RBP28.53■■■□□ 2.16
PTCD3-220ENST00000627371 POLR3AO14802 1390 aaPredicted RBP28.52■■■□□ 2.16
PTCD3-220ENST00000627371 PLEKHG3A1L390 1219 aa28.52■■■□□ 2.16
PTCD3-220ENST00000627371 EIF4G2P78344 907 aaKnown RBP eCLIP28.52■■■□□ 2.16
PTCD3-220ENST00000627371 NGDNQ8NEJ9 315 aaKnown RBP28.51■■■□□ 2.15
PTCD3-220ENST00000627371 KRT28Q7Z3Y7 464 aa28.5■■■□□ 2.15
PTCD3-220ENST00000627371 COL22A1Q8NFW1 1626 aaPredicted RBP28.5■■■□□ 2.15
PTCD3-220ENST00000627371 AKAP12Q02952 1782 aa28.5■■■□□ 2.15
PTCD3-220ENST00000627371 PSME1Q06323 249 aa28.49■■■□□ 2.15
PTCD3-220ENST00000627371 PUS7Q96PZ0 661 aaKnown RBP28.49■■■□□ 2.15
PTCD3-220ENST00000627371 PNPLA6Q8IY17 1366 aa28.49■■■□□ 2.15
PTCD3-220ENST00000627371 SBNO1A3KN83 1393 aa28.48■■■□□ 2.15
PTCD3-220ENST00000627371 DISP3Q9P2K9 1392 aa28.48■■■□□ 2.15
PTCD3-220ENST00000627371 ACEP12821 1306 aa28.47■■■□□ 2.15
PTCD3-220ENST00000627371 TMF1P82094 1093 aa28.47■■■□□ 2.15
PTCD3-220ENST00000627371 ALS2Q96Q42 1657 aa28.47■■■□□ 2.15
PTCD3-220ENST00000627371 MED1Q15648 1581 aaPredicted RBP28.46■■■□□ 2.15
PTCD3-220ENST00000627371 TNS3Q68CZ2 1445 aa28.46■■■□□ 2.15
PTCD3-220ENST00000627371 HSPA5P11021 654 aaKnown RBP28.46■■■□□ 2.15
PTCD3-220ENST00000627371 CABP1Q9NZU7 370 aa28.46■■■□□ 2.15
PTCD3-220ENST00000627371 SPATA31A6Q5VVP1 1343 aa28.44■■■□□ 2.14
PTCD3-220ENST00000627371 SPATA31A3Q5VYP0 1347 aa28.44■■■□□ 2.14
PTCD3-220ENST00000627371 MON2Q7Z3U7 1717 aa28.41■■■□□ 2.14
PTCD3-220ENST00000627371 NINLQ9Y2I6 1382 aa28.39■■■□□ 2.14
PTCD3-220ENST00000627371 CDCA8Q53HL2 280 aa28.39■■■□□ 2.14
PTCD3-220ENST00000627371 LRP6O75581 1613 aa28.39■■■□□ 2.13
PTCD3-220ENST00000627371 ARHGEF10O15013 1369 aa28.38■■■□□ 2.13
PTCD3-220ENST00000627371 USP6P35125 1406 aa28.38■■■□□ 2.13
PTCD3-220ENST00000627371 ABCA3Q99758 1704 aa28.38■■■□□ 2.13
PTCD3-220ENST00000627371 NRKQ7Z2Y5 1582 aa28.37■■■□□ 2.13
PTCD3-220ENST00000627371 CPSF1Q10570 1443 aaKnown RBP28.37■■■□□ 2.13
PTCD3-220ENST00000627371 CD163L1Q9NR16 1453 aa28.37■■■□□ 2.13
PTCD3-220ENST00000627371 MYOM1P52179 1685 aa28.37■■■□□ 2.13
PTCD3-220ENST00000627371 BRD4O60885 1362 aaPredicted RBP28.37■■■□□ 2.13
PTCD3-220ENST00000627371 TMC1Q8TDI8 760 aa28.36■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms