RNA–Protein interactions for RNA: ENST00000626631.1

TCF4-256, Transcript of transcription factor 4, human

TSL 2

Gene TCF4, Length 622 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-256	ENST00000626631	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.01	□□□□□ -0.49
TCF4-256	ENST00000626631	ASXL1	Q8IXJ9	1541 aa		12.01	□□□□□ -0.49
TCF4-256	ENST00000626631	LRRC59	Q96AG4	307 aa	Known RBP	12	□□□□□ -0.49
TCF4-256	ENST00000626631	SPHKAP	Q2M3C7	1700 aa		12	□□□□□ -0.49
TCF4-256	ENST00000626631	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.99	□□□□□ -0.49
TCF4-256	ENST00000626631	NUTM2E	B1AL46	878 aa	Predicted RBP	11.99	□□□□□ -0.49
TCF4-256	ENST00000626631	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.99	□□□□□ -0.49
TCF4-256	ENST00000626631	TRIM52	Q96A61	297 aa		11.99	□□□□□ -0.49
TCF4-256	ENST00000626631	NEXMIF	Q5QGS0	1516 aa		11.98	□□□□□ -0.49
TCF4-256	ENST00000626631	ADGRL3	Q9HAR2	1447 aa		11.98	□□□□□ -0.49
TCF4-256	ENST00000626631	AFF2	P51816	1311 aa		11.98	□□□□□ -0.49
TCF4-256	ENST00000626631	DDX17	Q92841	729 aa	Known RBP	11.98	□□□□□ -0.49
TCF4-256	ENST00000626631	NHSL1	Q5SYE7	1610 aa		11.97	□□□□□ -0.49
TCF4-256	ENST00000626631	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.97	□□□□□ -0.49
TCF4-256	ENST00000626631	LHX8	Q68G74	356 aa		11.97	□□□□□ -0.49
TCF4-256	ENST00000626631	CLTCL1	P53675	1640 aa		11.97	□□□□□ -0.49
TCF4-256	ENST00000626631	NAIP	Q13075	1403 aa		11.96	□□□□□ -0.49
TCF4-256	ENST00000626631	PNPLA6	Q8IY17	1366 aa		11.95	□□□□□ -0.5
TCF4-256	ENST00000626631	VGF	O15240	615 aa	Predicted RBP	11.95	□□□□□ -0.5
TCF4-256	ENST00000626631	QTRT2	Q9H974	415 aa	Known RBP	11.95	□□□□□ -0.5
TCF4-256	ENST00000626631	C1orf167	Q5SNV9	1468 aa		11.95	□□□□□ -0.5
TCF4-256	ENST00000626631	RRBP1	Q9P2E9	1410 aa	Known RBP	11.94	□□□□□ -0.5
TCF4-256	ENST00000626631	ROBO2	Q9HCK4	1378 aa		11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	SOS2	Q07890	1332 aa	Predicted RBP	11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	RPGRIP1L	Q68CZ1	1315 aa		11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	RBM6	P78332	1123 aa	Known RBP	11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	C8orf37	Q96NL8	207 aa		11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	ORAI2	Q96SN7	254 aa		11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	PTCH1	Q13635	1447 aa		11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	PRAG1	Q86YV5	1406 aa		11.93	□□□□□ -0.5
TCF4-256	ENST00000626631	NALCN	Q8IZF0	1738 aa		11.92	□□□□□ -0.5
TCF4-256	ENST00000626631	LAMC1	P11047	1609 aa		11.92	□□□□□ -0.5
TCF4-256	ENST00000626631	KIF1B	O60333	1816 aa		11.91	□□□□□ -0.5
TCF4-256	ENST00000626631	NGLY1	Q96IV0	654 aa		11.9	□□□□□ -0.5
TCF4-256	ENST00000626631	PLSCR2	Q9NRY7	297 aa		11.9	□□□□□ -0.5
TCF4-256	ENST00000626631	EP400	Q96L91	3159 aa		11.9	□□□□□ -0.5
TCF4-256	ENST00000626631	RGS12	O14924	1447 aa		11.89	□□□□□ -0.51
TCF4-256	ENST00000626631	ADAMTS2	O95450	1211 aa		11.89	□□□□□ -0.51
TCF4-256	ENST00000626631	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.89	□□□□□ -0.51
TCF4-256	ENST00000626631	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.89	□□□□□ -0.51
TCF4-256	ENST00000626631	HFM1	A2PYH4	1435 aa		11.88	□□□□□ -0.51
TCF4-256	ENST00000626631	FOXD4L1	Q9NU39	408 aa		11.86	□□□□□ -0.51
TCF4-256	ENST00000626631	USP21	Q9UK80	565 aa		11.86	□□□□□ -0.51
TCF4-256	ENST00000626631	ADGRF5	Q8IZF2	1346 aa		11.86	□□□□□ -0.51
TCF4-256	ENST00000626631	PRKAR2A	P13861	404 aa	Known RBP	11.85	□□□□□ -0.51
TCF4-256	ENST00000626631	TRPC5	Q9UL62	973 aa	Predicted RBP	11.85	□□□□□ -0.51
TCF4-256	ENST00000626631	PPL	O60437	1756 aa		11.84	□□□□□ -0.51
TCF4-256	ENST00000626631	ESCO1	Q5FWF5	840 aa		11.84	□□□□□ -0.51
TCF4-256	ENST00000626631	ATRN	O75882	1429 aa		11.84	□□□□□ -0.51
TCF4-256	ENST00000626631	NPHP3	Q7Z494	1330 aa		11.84	□□□□□ -0.51
TCF4-256	ENST00000626631	MYOM2	P54296	1465 aa		11.83	□□□□□ -0.52
TCF4-256	ENST00000626631	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.83	□□□□□ -0.52
TCF4-256	ENST00000626631	GABBR2	O75899	941 aa		11.83	□□□□□ -0.52
TCF4-256	ENST00000626631	WAPL	Q7Z5K2	1190 aa		11.83	□□□□□ -0.52
TCF4-256	ENST00000626631	BCL9L	Q86UU0	1499 aa		11.83	□□□□□ -0.52
TCF4-256	ENST00000626631	PXDN	Q92626	1479 aa		11.83	□□□□□ -0.52
TCF4-256	ENST00000626631	ABCC11	Q96J66	1382 aa		11.82	□□□□□ -0.52
TCF4-256	ENST00000626631	FOXO3	O43524	673 aa		11.82	□□□□□ -0.52
TCF4-256	ENST00000626631	TECPR2	O15040	1411 aa		11.82	□□□□□ -0.52
TCF4-256	ENST00000626631	SPATA31E1	Q6ZUB1	1445 aa		11.82	□□□□□ -0.52
TCF4-256	ENST00000626631	LRPPRC	P42704	1394 aa	Known RBP	11.81	□□□□□ -0.52
TCF4-256	ENST00000626631	ATAD2	Q6PL18	1390 aa		11.81	□□□□□ -0.52
TCF4-256	ENST00000626631	CDC42BPG	Q6DT37	1551 aa		11.81	□□□□□ -0.52
TCF4-256	ENST00000626631	RGL3	Q3MIN7	710 aa		11.81	□□□□□ -0.52
TCF4-256	ENST00000626631	STK26	Q9P289	416 aa		11.81	□□□□□ -0.52
TCF4-256	ENST00000626631	C19orf67	A6NJJ6	358 aa		11.8	□□□□□ -0.52
TCF4-256	ENST00000626631	XPC	Q01831	940 aa	Predicted RBP	11.8	□□□□□ -0.52
TCF4-256	ENST00000626631	TMEM132E	Q6IEE7	984 aa		11.8	□□□□□ -0.52
TCF4-256	ENST00000626631	SIRT1	Q96EB6	747 aa		11.8	□□□□□ -0.52
TCF4-256	ENST00000626631	MPHOSPH9	Q99550	1183 aa		11.8	□□□□□ -0.52
TCF4-256	ENST00000626631	ANKRD30B	Q9BXX2	1392 aa		11.79	□□□□□ -0.52
TCF4-256	ENST00000626631	CCDC144A	A2RUR9	1427 aa		11.79	□□□□□ -0.52
TCF4-256	ENST00000626631	PLEKHH1	Q9ULM0	1364 aa		11.79	□□□□□ -0.52
TCF4-256	ENST00000626631	NUTM2F	A1L443	756 aa		11.78	□□□□□ -0.52
TCF4-256	ENST00000626631	GJD4	Q96KN9	370 aa	Predicted RBP	11.78	□□□□□ -0.52
TCF4-256	ENST00000626631	PIK3C2G	O75747	1445 aa		11.77	□□□□□ -0.52
TCF4-256	ENST00000626631	CCDC125	Q86Z20	511 aa		11.77	□□□□□ -0.53
TCF4-256	ENST00000626631	C14orf93	Q9H972	538 aa	Known RBP	11.77	□□□□□ -0.53
TCF4-256	ENST00000626631	SPATA31A3	Q5VYP0	1347 aa		11.77	□□□□□ -0.53
TCF4-256	ENST00000626631	UNC5CL	Q8IV45	518 aa		11.76	□□□□□ -0.53
TCF4-256	ENST00000626631	YTHDC2	Q9H6S0	1430 aa	Known RBP	11.76	□□□□□ -0.53
TCF4-256	ENST00000626631	IFT172	Q9UG01	1749 aa		11.75	□□□□□ -0.53
TCF4-256	ENST00000626631	KRT28	Q7Z3Y7	464 aa		11.75	□□□□□ -0.53
TCF4-256	ENST00000626631	CLEC11A	Q9Y240	323 aa		11.75	□□□□□ -0.53
TCF4-256	ENST00000626631	SLIT2	O94813	1529 aa		11.75	□□□□□ -0.53
TCF4-256	ENST00000626631	MARF1	Q9Y4F3	1742 aa	Known RBP	11.74	□□□□□ -0.53
TCF4-256	ENST00000626631	KNDC1	Q76NI1	1749 aa		11.74	□□□□□ -0.53
TCF4-256	ENST00000626631	ZBTB22	O15209	634 aa		11.73	□□□□□ -0.53
TCF4-256	ENST00000626631	ZRANB1	Q9UGI0	708 aa		11.73	□□□□□ -0.53
TCF4-256	ENST00000626631	PHF8	Q9UPP1	1060 aa		11.73	□□□□□ -0.53
TCF4-256	ENST00000626631	FMN2	Q9NZ56	1722 aa		11.72	□□□□□ -0.53
TCF4-256	ENST00000626631	RALGAPB	Q86X10	1494 aa		11.72	□□□□□ -0.53
TCF4-256	ENST00000626631	NRXN1	Q9ULB1	1477 aa		11.72	□□□□□ -0.53
TCF4-256	ENST00000626631	ONECUT3	O60422	494 aa	Predicted RBP	11.72	□□□□□ -0.53
TCF4-256	ENST00000626631	CFAP70	Q5T0N1	1121 aa		11.72	□□□□□ -0.53
TCF4-256	ENST00000626631	GLI3	P10071	1580 aa		11.71	□□□□□ -0.53
TCF4-256	ENST00000626631	DHX57	Q6P158	1386 aa	Known RBP	11.71	□□□□□ -0.53
TCF4-256	ENST00000626631	PSME1	Q06323	249 aa		11.71	□□□□□ -0.53
TCF4-256	ENST00000626631	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.71	□□□□□ -0.54
TCF4-256	ENST00000626631	SBNO1	A3KN83	1393 aa		11.7	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms