RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 CEP152O94986 1710 aa17.93■□□□□ 0.46
LDB3-209ENST00000623056 TRAK2O60296 914 aa17.93■□□□□ 0.46
LDB3-209ENST00000623056 NPM1P06748 294 aaKnown RBP eCLIP17.93■□□□□ 0.46
LDB3-209ENST00000623056 CHMP5Q9NZZ3 219 aa17.93■□□□□ 0.46
LDB3-209ENST00000623056 FANCAO15360 1455 aa17.92■□□□□ 0.46
LDB3-209ENST00000623056 CARD14Q9BXL6 1004 aa17.92■□□□□ 0.46
LDB3-209ENST00000623056 ABCA9Q8IUA7 1624 aa17.92■□□□□ 0.46
LDB3-209ENST00000623056 RWDD1Q9H446 243 aaPredicted RBP17.92■□□□□ 0.46
LDB3-209ENST00000623056 RTEL1-TNFRSF6BF6WH68 1400 aa17.91■□□□□ 0.46
LDB3-209ENST00000623056 GLIPR1L2Q4G1C9 344 aa17.91■□□□□ 0.46
LDB3-209ENST00000623056 POLR3AO14802 1390 aaPredicted RBP17.91■□□□□ 0.46
LDB3-209ENST00000623056 MRE11P49959 708 aa17.9■□□□□ 0.46
LDB3-209ENST00000623056 NEUROD2Q15784 382 aa17.9■□□□□ 0.46
LDB3-209ENST00000623056 ARAP3Q8WWN8 1544 aa17.89■□□□□ 0.46
LDB3-209ENST00000623056 C22orf23Q9BZE7 217 aa17.89■□□□□ 0.46
LDB3-209ENST00000623056 BCL2L13Q9BXK5 485 aa17.89■□□□□ 0.45
LDB3-209ENST00000623056 RRP7AQ9Y3A4 280 aaKnown RBP17.89■□□□□ 0.45
LDB3-209ENST00000623056 SPAG9O60271 1321 aaKnown RBP17.88■□□□□ 0.45
LDB3-209ENST00000623056 STAC3Q96MF2 364 aa17.88■□□□□ 0.45
LDB3-209ENST00000623056 TRPM2O94759 1503 aa17.88■□□□□ 0.45
LDB3-209ENST00000623056 ERVK-7P63135 1459 aa17.88■□□□□ 0.45
LDB3-209ENST00000623056 HSP90AA1P07900 732 aaKnown RBP17.87■□□□□ 0.45
LDB3-209ENST00000623056 SHPRHQ149N8 1683 aa17.87■□□□□ 0.45
LDB3-209ENST00000623056 IQSEC2Q5JU85 1478 aa17.86■□□□□ 0.45
LDB3-209ENST00000623056 MFAP1P55081 439 aaKnown RBP17.86■□□□□ 0.45
LDB3-209ENST00000623056 RUNDC1Q96C34 613 aa17.86■□□□□ 0.45
LDB3-209ENST00000623056 PHF23Q9BUL5 403 aaPredicted RBP17.86■□□□□ 0.45
LDB3-209ENST00000623056 GRPEL1Q9HAV7 217 aa17.86■□□□□ 0.45
LDB3-209ENST00000623056 ADGRL1O94910 1474 aa17.85■□□□□ 0.45
LDB3-209ENST00000623056 HSP90AA2PQ14568 343 aaPredicted RBP17.85■□□□□ 0.45
LDB3-209ENST00000623056 TCP11L2Q8N4U5 519 aa17.85■□□□□ 0.45
LDB3-209ENST00000623056 PKNOX2Q96KN3 472 aa17.85■□□□□ 0.45
LDB3-209ENST00000623056 ZFYVE16Q7Z3T8 1539 aa17.85■□□□□ 0.45
LDB3-209ENST00000623056 CLTCL1P53675 1640 aa17.85■□□□□ 0.45
LDB3-209ENST00000623056 WDR63Q8IWG1 891 aa17.84■□□□□ 0.45
LDB3-209ENST00000623056 DDX11L8A8MPP1 907 aa17.84■□□□□ 0.45
LDB3-209ENST00000623056 RRP9O43818 475 aaKnown RBP17.84■□□□□ 0.45
LDB3-209ENST00000623056 MVPQ14764 893 aaKnown RBP17.84■□□□□ 0.45
LDB3-209ENST00000623056 ZNF692Q9BU19 519 aaPredicted RBP17.84■□□□□ 0.45
LDB3-209ENST00000623056 MYH16Q9H6N6 1097 aa17.84■□□□□ 0.45
LDB3-209ENST00000623056 KIAA1210Q9ULL0 1709 aa17.84■□□□□ 0.45
LDB3-209ENST00000623056 TRHP20396 242 aaPredicted RBP17.83■□□□□ 0.45
LDB3-209ENST00000623056 HSCBQ8IWL3 235 aa17.82■□□□□ 0.44
LDB3-209ENST00000623056 PTPRTO14522 1441 aa17.82■□□□□ 0.44
LDB3-209ENST00000623056 ESPNB1AK53 854 aa17.82■□□□□ 0.44
LDB3-209ENST00000623056 SLC24A1O60721 1099 aa17.82■□□□□ 0.44
LDB3-209ENST00000623056 ISY1Q9ULR0 285 aaKnown RBP17.82■□□□□ 0.44
LDB3-209ENST00000623056 ERBB4Q15303 1308 aa17.81■□□□□ 0.44
LDB3-209ENST00000623056 NCOA3Q9Y6Q9 1424 aa17.8■□□□□ 0.44
LDB3-209ENST00000623056 VSIG10Q8N0Z9 540 aa17.8■□□□□ 0.44
LDB3-209ENST00000623056 KANK1Q14678 1352 aa17.8■□□□□ 0.44
LDB3-209ENST00000623056 TNNT2P45379 298 aaPredicted RBP17.8■□□□□ 0.44
LDB3-209ENST00000623056 CFAP70Q5T0N1 1121 aa17.8■□□□□ 0.44
LDB3-209ENST00000623056 ATP7AQ04656 1500 aa17.79■□□□□ 0.44
LDB3-209ENST00000623056 DDIT3P35638 169 aa17.79■□□□□ 0.44
LDB3-209ENST00000623056 MORC1Q86VD1 984 aa17.79■□□□□ 0.44
LDB3-209ENST00000623056 CD109Q6YHK3 1445 aa17.79■□□□□ 0.44
LDB3-209ENST00000623056 CCDC27Q2M243 656 aa17.78■□□□□ 0.44
LDB3-209ENST00000623056 ZKSCAN2Q63HK3 967 aa17.78■□□□□ 0.44
LDB3-209ENST00000623056 FTSJ3Q8IY81 847 aaKnown RBP17.78■□□□□ 0.44
LDB3-209ENST00000623056 INO80Q9ULG1 1556 aaPredicted RBP17.78■□□□□ 0.44
LDB3-209ENST00000623056 DZIP1LQ8IYY4 767 aaKnown RBP17.78■□□□□ 0.44
LDB3-209ENST00000623056 NSD3Q9BZ95 1437 aa17.77■□□□□ 0.44
LDB3-209ENST00000623056 ZMYND15Q9H091 742 aa17.77■□□□□ 0.43
LDB3-209ENST00000623056 ABCA6Q8N139 1617 aa17.77■□□□□ 0.43
LDB3-209ENST00000623056 HDAC1Q13547 482 aaPredicted RBP17.76■□□□□ 0.43
LDB3-209ENST00000623056 GAS2L3Q86XJ1 694 aa17.75■□□□□ 0.43
LDB3-209ENST00000623056 TNPO1Q92973 898 aaKnown RBP17.75■□□□□ 0.43
LDB3-209ENST00000623056 TRIM44Q96DX7 344 aaPredicted RBP17.75■□□□□ 0.43
LDB3-209ENST00000623056 MAP3K4Q9Y6R4 1608 aa17.74■□□□□ 0.43
LDB3-209ENST00000623056 SNX21Q969T3 373 aa17.73■□□□□ 0.43
LDB3-209ENST00000623056 ADGRF5Q8IZF2 1346 aa17.73■□□□□ 0.43
LDB3-209ENST00000623056 RBM25P49756 843 aaKnown RBP17.73■□□□□ 0.43
LDB3-209ENST00000623056 ZNF518AQ6AHZ1 1483 aa17.73■□□□□ 0.43
LDB3-209ENST00000623056 MYOM2P54296 1465 aa17.72■□□□□ 0.43
LDB3-209ENST00000623056 SMC5Q8IY18 1101 aa17.72■□□□□ 0.43
LDB3-209ENST00000623056 MYO3AQ8NEV4 1616 aa17.72■□□□□ 0.43
LDB3-209ENST00000623056 MTHFSP49914 203 aa17.72■□□□□ 0.43
LDB3-209ENST00000623056 SBNO2Q9Y2G9 1366 aa17.72■□□□□ 0.43
LDB3-209ENST00000623056 TET3O43151 1660 aa17.72■□□□□ 0.43
LDB3-209ENST00000623056 KIF3BO15066 747 aa17.71■□□□□ 0.43
LDB3-209ENST00000623056 GBP4Q96PP9 640 aa17.71■□□□□ 0.43
LDB3-209ENST00000623056 CIZ1Q9ULV3 898 aaPredicted RBP17.71■□□□□ 0.43
LDB3-209ENST00000623056 TRIM27P14373 513 aa17.71■□□□□ 0.43
LDB3-209ENST00000623056 SMC4Q9NTJ3 1288 aa17.71■□□□□ 0.43
LDB3-209ENST00000623056 RAB3GAP1Q15042 981 aa17.7■□□□□ 0.42
LDB3-209ENST00000623056 ITPRIPQ8IWB1 547 aa17.7■□□□□ 0.42
LDB3-209ENST00000623056 DDX19BQ9UMR2 479 aa17.7■□□□□ 0.42
LDB3-209ENST00000623056 NEURL4Q96JN8 1562 aa17.7■□□□□ 0.42
LDB3-209ENST00000623056 CT47B1P0C2W7 299 aaPredicted RBP17.7■□□□□ 0.42
LDB3-209ENST00000623056 NCBP3Q53F19 620 aaKnown RBP17.7■□□□□ 0.42
LDB3-209ENST00000623056 TSR2Q969E8 191 aaKnown RBP17.7■□□□□ 0.42
LDB3-209ENST00000623056 CFAP53Q96M91 514 aa17.7■□□□□ 0.42
LDB3-209ENST00000623056 KIDINS220Q9ULH0 1771 aa17.69■□□□□ 0.42
LDB3-209ENST00000623056 DEPDC5O75140 1603 aa17.69■□□□□ 0.42
LDB3-209ENST00000623056 HSP90AB1P08238 724 aaKnown RBP17.69■□□□□ 0.42
LDB3-209ENST00000623056 SKOR2Q2VWA4 1001 aaPredicted RBP17.69■□□□□ 0.42
LDB3-209ENST00000623056 SLC12A5Q9H2X9 1139 aa17.69■□□□□ 0.42
LDB3-209ENST00000623056 TPM2P07951 284 aa17.68■□□□□ 0.42
LDB3-209ENST00000623056 POGZQ7Z3K3 1410 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms