RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 ZMYM3Q14202 1370 aa25.11■■□□□ 1.61
PDLIM3-212ENST00000620787 AAMPQ13685 434 aa25.1■■□□□ 1.61
PDLIM3-212ENST00000620787 PMFBP1Q8TBY8 1022 aa25.1■■□□□ 1.61
PDLIM3-212ENST00000620787 PHF23Q9BUL5 403 aaPredicted RBP25.09■■□□□ 1.61
PDLIM3-212ENST00000620787 NSD3Q9BZ95 1437 aa25.09■■□□□ 1.61
PDLIM3-212ENST00000620787 POGKQ9P215 609 aa25.09■■□□□ 1.61
PDLIM3-212ENST00000620787 RUNDC1Q96C34 613 aa25.08■■□□□ 1.61
PDLIM3-212ENST00000620787 PCDHB15Q9Y5E8 787 aa25.08■■□□□ 1.61
PDLIM3-212ENST00000620787 RLBP1P12271 317 aa25.08■■□□□ 1.6
PDLIM3-212ENST00000620787 ANTXR1Q9H6X2 564 aa25.07■■□□□ 1.6
PDLIM3-212ENST00000620787 TNNQ9UQP3 1299 aa25.07■■□□□ 1.6
PDLIM3-212ENST00000620787 RRP7AQ9Y3A4 280 aaKnown RBP25.07■■□□□ 1.6
PDLIM3-212ENST00000620787 SETBP1Q9Y6X0 1596 aa25.06■■□□□ 1.6
PDLIM3-212ENST00000620787 NEUROD2Q15784 382 aa25.06■■□□□ 1.6
PDLIM3-212ENST00000620787 SLKQ9H2G2 1235 aaPredicted RBP25.06■■□□□ 1.6
PDLIM3-212ENST00000620787 EFCAB6Q5THR3 1501 aa25.06■■□□□ 1.6
PDLIM3-212ENST00000620787 USP32Q8NFA0 1604 aa25.06■■□□□ 1.6
PDLIM3-212ENST00000620787 QRICH2Q9H0J4 1663 aa25.05■■□□□ 1.6
PDLIM3-212ENST00000620787 ABCA9Q8IUA7 1624 aa25.05■■□□□ 1.6
PDLIM3-212ENST00000620787 TCP11L2Q8N4U5 519 aa25.05■■□□□ 1.6
PDLIM3-212ENST00000620787 KIF3BO15066 747 aa25.04■■□□□ 1.6
PDLIM3-212ENST00000620787 MORC1Q86VD1 984 aa25.04■■□□□ 1.6
PDLIM3-212ENST00000620787 FAM43AQ8N2R8 423 aa25.04■■□□□ 1.6
PDLIM3-212ENST00000620787 TBC1D32Q96NH3 1257 aa25.04■■□□□ 1.6
PDLIM3-212ENST00000620787 PDZRN3Q9UPQ7 1066 aa25.04■■□□□ 1.6
PDLIM3-212ENST00000620787 WDR63Q8IWG1 891 aa25.03■■□□□ 1.6
PDLIM3-212ENST00000620787 PPRC1Q5VV67 1664 aaKnown RBP25.03■■□□□ 1.6
PDLIM3-212ENST00000620787 ZNF518AQ6AHZ1 1483 aa25.01■■□□□ 1.59
PDLIM3-212ENST00000620787 UPF2Q9HAU5 1272 aaKnown RBP25.01■■□□□ 1.59
PDLIM3-212ENST00000620787 TNNT2P45379 298 aaPredicted RBP25■■□□□ 1.59
PDLIM3-212ENST00000620787 ADGRB3O60242 1522 aa25■■□□□ 1.59
PDLIM3-212ENST00000620787 CCDC27Q2M243 656 aa24.99■■□□□ 1.59
PDLIM3-212ENST00000620787 BCL2L13Q9BXK5 485 aa24.99■■□□□ 1.59
PDLIM3-212ENST00000620787 TBC1D2Q9BYX2 928 aa24.99■■□□□ 1.59
PDLIM3-212ENST00000620787 NOS1P29475 1434 aa24.98■■□□□ 1.59
PDLIM3-212ENST00000620787 PPLO60437 1756 aa24.98■■□□□ 1.59
PDLIM3-212ENST00000620787 FANCAO15360 1455 aa24.98■■□□□ 1.59
PDLIM3-212ENST00000620787 SLC12A5Q9H2X9 1139 aa24.97■■□□□ 1.59
PDLIM3-212ENST00000620787 RWDD1Q9H446 243 aaPredicted RBP24.97■■□□□ 1.59
PDLIM3-212ENST00000620787 ADGRB2O60241 1585 aa24.95■■□□□ 1.58
PDLIM3-212ENST00000620787 ADGRB1O14514 1584 aa24.95■■□□□ 1.58
PDLIM3-212ENST00000620787 MTHFSP49914 203 aa24.94■■□□□ 1.58
PDLIM3-212ENST00000620787 LMTK2Q8IWU2 1503 aa24.93■■□□□ 1.58
PDLIM3-212ENST00000620787 MVPQ14764 893 aaKnown RBP24.93■■□□□ 1.58
PDLIM3-212ENST00000620787 TRAK1Q9UPV9 953 aa24.92■■□□□ 1.58
PDLIM3-212ENST00000620787 NCBP3Q53F19 620 aaKnown RBP24.91■■□□□ 1.58
PDLIM3-212ENST00000620787 ADGRL1O94910 1474 aa24.91■■□□□ 1.58
PDLIM3-212ENST00000620787 L1TD1Q5T7N2 865 aaKnown RBP24.91■■□□□ 1.58
PDLIM3-212ENST00000620787 MYH16Q9H6N6 1097 aa24.91■■□□□ 1.58
PDLIM3-212ENST00000620787 KIDINS220Q9ULH0 1771 aa24.9■■□□□ 1.58
PDLIM3-212ENST00000620787 CFAP53Q96M91 514 aa24.9■■□□□ 1.58
PDLIM3-212ENST00000620787 C14orf93Q9H972 538 aaKnown RBP24.88■■□□□ 1.57
PDLIM3-212ENST00000620787 ZKSCAN2Q63HK3 967 aa24.87■■□□□ 1.57
PDLIM3-212ENST00000620787 RSPH6AQ9H0K4 717 aa24.86■■□□□ 1.57
PDLIM3-212ENST00000620787 DZIP1LQ8IYY4 767 aaKnown RBP24.86■■□□□ 1.57
PDLIM3-212ENST00000620787 CFAP65Q6ZU64 1925 aaKnown RBP24.85■■□□□ 1.57
PDLIM3-212ENST00000620787 FTSJ3Q8IY81 847 aaKnown RBP24.83■■□□□ 1.57
PDLIM3-212ENST00000620787 NSD2O96028 1365 aa24.83■■□□□ 1.57
PDLIM3-212ENST00000620787 ARHGEF28Q8N1W1 1705 aaKnown RBP24.83■■□□□ 1.57
PDLIM3-212ENST00000620787 TULP4Q9NRJ4 1543 aa24.83■■□□□ 1.56
PDLIM3-212ENST00000620787 CT47B1P0C2W7 299 aaPredicted RBP24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 CHGAP10645 457 aaKnown RBP24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 MCM4P33991 863 aa24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 C22orf23Q9BZE7 217 aa24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 RRAGDQ9NQL2 400 aaPredicted RBP24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 GLI2P10070 1586 aa24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 U2AF1L5P0DN76 240 aaPredicted RBP24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 U2AF1Q01081 240 aaKnown RBP eCLIP24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 TMEM132EQ6IEE7 984 aa24.82■■□□□ 1.56
PDLIM3-212ENST00000620787 SPRYD3Q8NCJ5 442 aa24.81■■□□□ 1.56
PDLIM3-212ENST00000620787 ANKRD36BQ8N2N9 1353 aa24.81■■□□□ 1.56
PDLIM3-212ENST00000620787 EIF5BO60841 1220 aaKnown RBP24.81■■□□□ 1.56
PDLIM3-212ENST00000620787 FSD2A1L4K1 749 aa24.8■■□□□ 1.56
PDLIM3-212ENST00000620787 HDAC1Q13547 482 aaPredicted RBP24.8■■□□□ 1.56
PDLIM3-212ENST00000620787 TSR2Q969E8 191 aaKnown RBP24.8■■□□□ 1.56
PDLIM3-212ENST00000620787 MFAP1P55081 439 aaKnown RBP24.79■■□□□ 1.56
PDLIM3-212ENST00000620787 NPATQ14207 1427 aa24.79■■□□□ 1.56
PDLIM3-212ENST00000620787 CD109Q6YHK3 1445 aa24.78■■□□□ 1.56
PDLIM3-212ENST00000620787 XRCC6P12956 609 aaKnown RBP eCLIP24.78■■□□□ 1.56
PDLIM3-212ENST00000620787 TRIM27P14373 513 aa24.78■■□□□ 1.56
PDLIM3-212ENST00000620787 PUS7Q96PZ0 661 aaKnown RBP24.78■■□□□ 1.56
PDLIM3-212ENST00000620787 SMC4Q9NTJ3 1288 aa24.78■■□□□ 1.56
PDLIM3-212ENST00000620787 CHMP5Q9NZZ3 219 aa24.78■■□□□ 1.56
PDLIM3-212ENST00000620787 EXOSC9Q06265 439 aaKnown RBP24.76■■□□□ 1.55
PDLIM3-212ENST00000620787 GOLGA6L3A6NEY3 463 aa24.76■■□□□ 1.55
PDLIM3-212ENST00000620787 DDX19BQ9UMR2 479 aa24.75■■□□□ 1.55
PDLIM3-212ENST00000620787 EVC2Q86UK5 1308 aa24.74■■□□□ 1.55
PDLIM3-212ENST00000620787 COL3A1P02461 1466 aaPredicted RBP24.74■■□□□ 1.55
PDLIM3-212ENST00000620787 SSH1Q8WYL5 1049 aa24.74■■□□□ 1.55
PDLIM3-212ENST00000620787 PLEKHF1Q96S99 279 aa24.74■■□□□ 1.55
PDLIM3-212ENST00000620787 SMC5Q8IY18 1101 aa24.74■■□□□ 1.55
PDLIM3-212ENST00000620787 RPGRIP1LQ68CZ1 1315 aa24.73■■□□□ 1.55
PDLIM3-212ENST00000620787 ATF7IPQ6VMQ6 1270 aa24.73■■□□□ 1.55
PDLIM3-212ENST00000620787 ITPRIPQ8IWB1 547 aa24.73■■□□□ 1.55
PDLIM3-212ENST00000620787 TRIM35Q9UPQ4 493 aa24.73■■□□□ 1.55
PDLIM3-212ENST00000620787 TMPOP42166 694 aaKnown RBP24.72■■□□□ 1.55
PDLIM3-212ENST00000620787 ZNF692Q9BU19 519 aaPredicted RBP24.72■■□□□ 1.55
PDLIM3-212ENST00000620787 NCOA3Q9Y6Q9 1424 aa24.71■■□□□ 1.55
PDLIM3-212ENST00000620787 ARXQ96QS3 562 aa24.71■■□□□ 1.55
PDLIM3-212ENST00000620787 GZF1Q9H116 711 aaPredicted RBP24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms