RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 RGS3P49796 1198 aa13.89□□□□□ -0.19
UPF3A-212ENST00000619079 PREX1Q8TCU6 1659 aa13.88□□□□□ -0.19
UPF3A-212ENST00000619079 SPATA31D1Q6ZQQ2 1576 aa13.88□□□□□ -0.19
UPF3A-212ENST00000619079 MAPK8IP3Q9UPT6 1336 aa13.88□□□□□ -0.19
UPF3A-212ENST00000619079 NOS1P29475 1434 aa13.88□□□□□ -0.19
UPF3A-212ENST00000619079 SLC52A1Q9NWF4 448 aa13.88□□□□□ -0.19
UPF3A-212ENST00000619079 PER1O15534 1290 aaPredicted RBP13.87□□□□□ -0.19
UPF3A-212ENST00000619079 IDI1Q13907 227 aa13.87□□□□□ -0.19
UPF3A-212ENST00000619079 CCDC144AA2RUR9 1427 aa13.86□□□□□ -0.19
UPF3A-212ENST00000619079 FSD2A1L4K1 749 aa13.85□□□□□ -0.19
UPF3A-212ENST00000619079 USP19O94966 1318 aa13.85□□□□□ -0.19
UPF3A-212ENST00000619079 DUSP27Q5VZP5 1158 aa13.85□□□□□ -0.19
UPF3A-212ENST00000619079 UGGT1Q9NYU2 1555 aa13.85□□□□□ -0.19
UPF3A-212ENST00000619079 PTPRTO14522 1441 aa13.84□□□□□ -0.19
UPF3A-212ENST00000619079 NLRP1Q9C000 1473 aa13.84□□□□□ -0.19
UPF3A-212ENST00000619079 SYNMO15061 1565 aa13.84□□□□□ -0.19
UPF3A-212ENST00000619079 SPHKAPQ2M3C7 1700 aa13.84□□□□□ -0.19
UPF3A-212ENST00000619079 XRCC6P12956 609 aaKnown RBP eCLIP13.84□□□□□ -0.19
UPF3A-212ENST00000619079 ANTXR1Q9H6X2 564 aa13.84□□□□□ -0.19
UPF3A-212ENST00000619079 UPF2Q9HAU5 1272 aaKnown RBP13.84□□□□□ -0.19
UPF3A-212ENST00000619079 GOLGA2Q08379 1002 aa13.83□□□□□ -0.19
UPF3A-212ENST00000619079 ISY1Q9ULR0 285 aaKnown RBP13.83□□□□□ -0.19
UPF3A-212ENST00000619079 SETD1BQ9UPS6 1966 aaKnown RBP13.83□□□□□ -0.2
UPF3A-212ENST00000619079 PLA2R1Q13018 1463 aa13.83□□□□□ -0.2
UPF3A-212ENST00000619079 TRPM2O94759 1503 aa13.83□□□□□ -0.2
UPF3A-212ENST00000619079 MYO3AQ8NEV4 1616 aa13.83□□□□□ -0.2
UPF3A-212ENST00000619079 HSPA2P54652 639 aa13.82□□□□□ -0.2
UPF3A-212ENST00000619079 MRE11P49959 708 aa13.82□□□□□ -0.2
UPF3A-212ENST00000619079 SLKQ9H2G2 1235 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-212ENST00000619079 CEP170BQ9Y4F5 1589 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-212ENST00000619079 A2ML1A8K2U0 1454 aa13.81□□□□□ -0.2
UPF3A-212ENST00000619079 NINLQ9Y2I6 1382 aa13.81□□□□□ -0.2
UPF3A-212ENST00000619079 ZNF521Q96K83 1311 aa13.81□□□□□ -0.2
UPF3A-212ENST00000619079 THEMISQ8N1K5 641 aaPredicted RBP13.81□□□□□ -0.2
UPF3A-212ENST00000619079 RGL3Q3MIN7 710 aa13.8□□□□□ -0.2
UPF3A-212ENST00000619079 CGNL1Q0VF96 1302 aa13.8□□□□□ -0.2
UPF3A-212ENST00000619079 CC2D1BQ5T0F9 858 aaKnown RBP13.8□□□□□ -0.2
UPF3A-212ENST00000619079 LAMC1P11047 1609 aa13.8□□□□□ -0.2
UPF3A-212ENST00000619079 WDR43Q15061 677 aaKnown RBP eCLIP13.79□□□□□ -0.2
UPF3A-212ENST00000619079 PLEKHH1Q9ULM0 1364 aa13.79□□□□□ -0.2
UPF3A-212ENST00000619079 CLTCL1P53675 1640 aa13.79□□□□□ -0.2
UPF3A-212ENST00000619079 TRPM1Q7Z4N2 1603 aa13.79□□□□□ -0.2
UPF3A-212ENST00000619079 LMTK3Q96Q04 1460 aa13.78□□□□□ -0.2
UPF3A-212ENST00000619079 PIK3C2BO00750 1634 aa13.78□□□□□ -0.2
UPF3A-212ENST00000619079 GPRASP1Q5JY77 1395 aa13.78□□□□□ -0.2
UPF3A-212ENST00000619079 ADAMTS8Q9UP79 889 aa13.78□□□□□ -0.2
UPF3A-212ENST00000619079 KDM2AQ9Y2K7 1162 aa13.78□□□□□ -0.2
UPF3A-212ENST00000619079 TPM2P07951 284 aa13.78□□□□□ -0.2
UPF3A-212ENST00000619079 MCM4P33991 863 aa13.78□□□□□ -0.2
UPF3A-212ENST00000619079 PRAG1Q86YV5 1406 aa13.77□□□□□ -0.2
UPF3A-212ENST00000619079 NKTRP30414 1462 aaKnown RBP13.77□□□□□ -0.2
UPF3A-212ENST00000619079 SLFN5Q08AF3 891 aa13.76□□□□□ -0.21
UPF3A-212ENST00000619079 ADGRB3O60242 1522 aa13.76□□□□□ -0.21
UPF3A-212ENST00000619079 CENPJQ9HC77 1338 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-212ENST00000619079 AAMPQ13685 434 aa13.76□□□□□ -0.21
UPF3A-212ENST00000619079 NUTM2DQ5VT03 806 aaPredicted RBP13.76□□□□□ -0.21
UPF3A-212ENST00000619079 MYH16Q9H6N6 1097 aa13.76□□□□□ -0.21
UPF3A-212ENST00000619079 ESPNB1AK53 854 aa13.75□□□□□ -0.21
UPF3A-212ENST00000619079 PDE3AQ14432 1141 aa13.75□□□□□ -0.21
UPF3A-212ENST00000619079 TBC1D32Q96NH3 1257 aa13.75□□□□□ -0.21
UPF3A-212ENST00000619079 SENP3Q9H4L4 574 aaPredicted RBP13.75□□□□□ -0.21
UPF3A-212ENST00000619079 EID1Q9Y6B2 187 aa13.75□□□□□ -0.21
UPF3A-212ENST00000619079 TRMT2AQ8IZ69 625 aaKnown RBP13.75□□□□□ -0.21
UPF3A-212ENST00000619079 PANK3Q9H999 370 aa13.75□□□□□ -0.21
UPF3A-212ENST00000619079 ZNF142P52746 1687 aaPredicted RBP13.74□□□□□ -0.21
UPF3A-212ENST00000619079 HDGFP51858 240 aaKnown RBP13.74□□□□□ -0.21
UPF3A-212ENST00000619079 TXNDC2Q86VQ3 553 aa13.74□□□□□ -0.21
UPF3A-212ENST00000619079 ANKLE2Q86XL3 938 aa13.74□□□□□ -0.21
UPF3A-212ENST00000619079 NGEFQ8N5V2 710 aa13.74□□□□□ -0.21
UPF3A-212ENST00000619079 TBC1D2Q9BYX2 928 aa13.74□□□□□ -0.21
UPF3A-212ENST00000619079 PANK2Q9BZ23 570 aa13.74□□□□□ -0.21
UPF3A-212ENST00000619079 TMEM2Q9UHN6 1383 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 DDX11L8A8MPP1 907 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 SEC24BO95487 1268 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 TMF1P82094 1093 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 PDCL3Q9H2J4 239 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 CHMP5Q9NZZ3 219 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 UBR1Q8IWV7 1749 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 TRAK2O60296 914 aa13.73□□□□□ -0.21
UPF3A-212ENST00000619079 TMEM131LA2VDJ0 1609 aa13.72□□□□□ -0.21
UPF3A-212ENST00000619079 KIF1BO60333 1816 aa13.72□□□□□ -0.21
UPF3A-212ENST00000619079 IGHDP01880 384 aa13.72□□□□□ -0.21
UPF3A-212ENST00000619079 CLUAP1Q96AJ1 413 aa13.72□□□□□ -0.21
UPF3A-212ENST00000619079 TRIM44Q96DX7 344 aaPredicted RBP13.72□□□□□ -0.21
UPF3A-212ENST00000619079 DISP3Q9P2K9 1392 aa13.72□□□□□ -0.21
UPF3A-212ENST00000619079 GRPEL1Q9HAV7 217 aa13.72□□□□□ -0.21
UPF3A-212ENST00000619079 NCKAP5LQ9HCH0 1330 aa13.72□□□□□ -0.21
UPF3A-212ENST00000619079 RIMS2Q9UQ26 1411 aa13.71□□□□□ -0.21
UPF3A-212ENST00000619079 E9PSI1 815 aa13.71□□□□□ -0.21
UPF3A-212ENST00000619079 ARXQ96QS3 562 aa13.71□□□□□ -0.21
UPF3A-212ENST00000619079 TESK2Q96S53 571 aa13.71□□□□□ -0.21
UPF3A-212ENST00000619079 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.71□□□□□ -0.22
UPF3A-212ENST00000619079 PMFBP1Q8TBY8 1022 aa13.71□□□□□ -0.22
UPF3A-212ENST00000619079 PIK3C2GO75747 1445 aa13.7□□□□□ -0.22
UPF3A-212ENST00000619079 LTKP29376 864 aa13.7□□□□□ -0.22
UPF3A-212ENST00000619079 PPP2R1AP30153 589 aa13.7□□□□□ -0.22
UPF3A-212ENST00000619079 GZF1Q9H116 711 aaPredicted RBP13.7□□□□□ -0.22
UPF3A-212ENST00000619079 RPGRIP1LQ68CZ1 1315 aa13.69□□□□□ -0.22
UPF3A-212ENST00000619079 KDM5AP29375 1690 aaKnown RBP13.69□□□□□ -0.22
UPF3A-212ENST00000619079 MYO5BQ9ULV0 1848 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms