RNA–Protein interactions for RNA: ENST00000618819.4

PTPN9-206, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene PTPN9, Length 7,813 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-206ENST00000618819 EIF2S2P20042 333 aaKnown RBP17.41■□□□□ 0.38
PTPN9-206ENST00000618819 NUTM2DQ5VT03 806 aaPredicted RBP17.4■□□□□ 0.38
PTPN9-206ENST00000618819 CCDC112Q8NEF3 446 aa17.4■□□□□ 0.38
PTPN9-206ENST00000618819 C9orf78Q9NZ63 289 aaPredicted RBP17.4■□□□□ 0.38
PTPN9-206ENST00000618819 TRERF1Q96PN7 1200 aa17.4■□□□□ 0.38
PTPN9-206ENST00000618819 MTMR7Q9Y216 660 aa17.4■□□□□ 0.38
PTPN9-206ENST00000618819 LNPKQ9C0E8 428 aa17.4■□□□□ 0.38
PTPN9-206ENST00000618819 LRRFIP1Q32MZ4 808 aaKnown RBP17.4■□□□□ 0.38
PTPN9-206ENST00000618819 CCP110O43303 1012 aa17.39■□□□□ 0.38
PTPN9-206ENST00000618819 ERLIN2O94905 339 aa17.39■□□□□ 0.38
PTPN9-206ENST00000618819 NUTM2FA1L443 756 aa17.39■□□□□ 0.37
PTPN9-206ENST00000618819 CCDC102AQ96A19 550 aa17.39■□□□□ 0.37
PTPN9-206ENST00000618819 CEBPZQ03701 1054 aaKnown RBP17.38■□□□□ 0.37
PTPN9-206ENST00000618819 E9PSI1 815 aa17.38■□□□□ 0.37
PTPN9-206ENST00000618819 RRP9O43818 475 aaKnown RBP17.38■□□□□ 0.37
PTPN9-206ENST00000618819 CCAR1Q8IX12 1150 aaKnown RBP17.38■□□□□ 0.37
PTPN9-206ENST00000618819 TERF2IPQ9NYB0 399 aa17.38■□□□□ 0.37
PTPN9-206ENST00000618819 CCDC181Q5TID7 509 aa17.37■□□□□ 0.37
PTPN9-206ENST00000618819 MYBBP1AQ9BQG0 1328 aaKnown RBP17.37■□□□□ 0.37
PTPN9-206ENST00000618819 TNIKQ9UKE5 1360 aa17.37■□□□□ 0.37
PTPN9-206ENST00000618819 FYB1O15117 783 aa17.37■□□□□ 0.37
PTPN9-206ENST00000618819 LETM1O95202 739 aaPredicted RBP17.37■□□□□ 0.37
PTPN9-206ENST00000618819 CBX1P83916 185 aa17.37■□□□□ 0.37
PTPN9-206ENST00000618819 EIF3AQ14152 1382 aaKnown RBP17.37■□□□□ 0.37
PTPN9-206ENST00000618819 EIF3JO75822 258 aaKnown RBP17.37■□□□□ 0.37
PTPN9-206ENST00000618819 ATP2B1P20020 1258 aa17.37■□□□□ 0.37
PTPN9-206ENST00000618819 PAF1Q8N7H5 531 aa17.37■□□□□ 0.37
PTPN9-206ENST00000618819 IPO4Q8TEX9 1081 aaKnown RBP17.37■□□□□ 0.37
PTPN9-206ENST00000618819 FILIP1LQ4L180 1135 aa17.36■□□□□ 0.37
PTPN9-206ENST00000618819 DDX19BQ9UMR2 479 aa17.36■□□□□ 0.37
PTPN9-206ENST00000618819 PHLDB1Q86UU1 1377 aa17.36■□□□□ 0.37
PTPN9-206ENST00000618819 MAGEC2Q9UBF1 373 aaPredicted RBP17.36■□□□□ 0.37
PTPN9-206ENST00000618819 KINO60870 393 aaKnown RBP17.35■□□□□ 0.37
PTPN9-206ENST00000618819 KIF15Q9NS87 1388 aa17.35■□□□□ 0.37
PTPN9-206ENST00000618819 SERPINC1P01008 464 aa17.35■□□□□ 0.37
PTPN9-206ENST00000618819 FIBPO43427 364 aa17.34■□□□□ 0.37
PTPN9-206ENST00000618819 VPS37DQ86XT2 251 aa17.34■□□□□ 0.37
PTPN9-206ENST00000618819 LRRCC1Q9C099 1032 aa17.34■□□□□ 0.37
PTPN9-206ENST00000618819 MPHOSPH9Q99550 1183 aa17.34■□□□□ 0.37
PTPN9-206ENST00000618819 RSPH4AQ5TD94 716 aa17.34■□□□□ 0.37
PTPN9-206ENST00000618819 TNNT1P13805 278 aa17.34■□□□□ 0.37
PTPN9-206ENST00000618819 GOLGA6L10A0A0M3HER8 536 aa17.34■□□□□ 0.37
PTPN9-206ENST00000618819 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.34■□□□□ 0.37
PTPN9-206ENST00000618819 ERLIN1O75477 346 aa17.33■□□□□ 0.37
PTPN9-206ENST00000618819 NGDNQ8NEJ9 315 aaKnown RBP17.33■□□□□ 0.37
PTPN9-206ENST00000618819 DZIP1LQ8IYY4 767 aaKnown RBP17.33■□□□□ 0.36
PTPN9-206ENST00000618819 NF2P35240 595 aa17.32■□□□□ 0.36
PTPN9-206ENST00000618819 SYCP1Q15431 976 aa17.32■□□□□ 0.36
PTPN9-206ENST00000618819 RALYLQ86SE5 291 aaKnown RBP17.32■□□□□ 0.36
PTPN9-206ENST00000618819 ANKRD18AQ8IVF6 992 aa17.32■□□□□ 0.36
PTPN9-206ENST00000618819 BRMS1Q9HCU9 246 aa17.32■□□□□ 0.36
PTPN9-206ENST00000618819 ZBED9Q6R2W3 1325 aa17.32■□□□□ 0.36
PTPN9-206ENST00000618819 PANK3Q9H999 370 aa17.32■□□□□ 0.36
PTPN9-206ENST00000618819 LRRFIP2Q9Y608 721 aaKnown RBP17.31■□□□□ 0.36
PTPN9-206ENST00000618819 G3BP1Q13283 466 aaKnown RBP eCLIP17.31■□□□□ 0.36
PTPN9-206ENST00000618819 PDCL2Q8N4E4 241 aa17.31■□□□□ 0.36
PTPN9-206ENST00000618819 RAB3GAP2Q9H2M9 1393 aa17.31■□□□□ 0.36
PTPN9-206ENST00000618819 ZNF526Q8TF50 670 aaPredicted RBP17.31■□□□□ 0.36
PTPN9-206ENST00000618819 CGNQ9P2M7 1197 aaKnown RBP17.31■□□□□ 0.36
PTPN9-206ENST00000618819 CEP164Q9UPV0 1460 aa17.3■□□□□ 0.36
PTPN9-206ENST00000618819 GRPEL1Q9HAV7 217 aa17.3■□□□□ 0.36
PTPN9-206ENST00000618819 EZRP15311 586 aaKnown RBP17.3■□□□□ 0.36
PTPN9-206ENST00000618819 APAF1O14727 1248 aa17.3■□□□□ 0.36
PTPN9-206ENST00000618819 WASHC4Q2M389 1173 aa17.3■□□□□ 0.36
PTPN9-206ENST00000618819 MBD3O95983 291 aa17.3■□□□□ 0.36
PTPN9-206ENST00000618819 RBM33Q96EV2 1170 aaKnown RBP17.3■□□□□ 0.36
PTPN9-206ENST00000618819 ZNHIT6Q9NWK9 470 aaKnown RBP17.29■□□□□ 0.36
PTPN9-206ENST00000618819 C1orf141Q5JVX7 400 aa17.29■□□□□ 0.36
PTPN9-206ENST00000618819 PPFIBP1Q86W92 1011 aa17.28■□□□□ 0.36
PTPN9-206ENST00000618819 ZHX1Q9UKY1 873 aaPredicted RBP17.28■□□□□ 0.36
PTPN9-206ENST00000618819 TMEM132AQ24JP5 1023 aa17.28■□□□□ 0.36
PTPN9-206ENST00000618819 CDC45O75419 566 aa17.28■□□□□ 0.36
PTPN9-206ENST00000618819 L3MBTL2Q969R5 705 aa17.28■□□□□ 0.36
PTPN9-206ENST00000618819 CWC22Q9HCG8 908 aaKnown RBP17.27■□□□□ 0.36
PTPN9-206ENST00000618819 NEUROD6Q96NK8 337 aa17.27■□□□□ 0.35
PTPN9-206ENST00000618819 MSH5O43196 834 aa17.26■□□□□ 0.35
PTPN9-206ENST00000618819 NUP155O75694 1391 aa17.26■□□□□ 0.35
PTPN9-206ENST00000618819 PANK1Q8TE04 598 aa17.26■□□□□ 0.35
PTPN9-206ENST00000618819 CDK5RAP3Q96JB5 506 aa17.26■□□□□ 0.35
PTPN9-206ENST00000618819 CFAP45Q9UL16 551 aa17.26■□□□□ 0.35
PTPN9-206ENST00000618819 ARHGAP35Q9NRY4 1499 aa17.26■□□□□ 0.35
PTPN9-206ENST00000618819 RABEP1Q15276 862 aa17.26■□□□□ 0.35
PTPN9-206ENST00000618819 FKBP5Q13451 457 aaPredicted RBP17.26■□□□□ 0.35
PTPN9-206ENST00000618819 DNAJC2Q99543 621 aaKnown RBP17.26■□□□□ 0.35
PTPN9-206ENST00000618819 GBP2P32456 591 aaPredicted RBP17.25■□□□□ 0.35
PTPN9-206ENST00000618819 XBP1P17861 261 aa17.25■□□□□ 0.35
PTPN9-206ENST00000618819 TMCO3Q6UWJ1 677 aa17.25■□□□□ 0.35
PTPN9-206ENST00000618819 TANGO6Q9C0B7 1094 aa17.25■□□□□ 0.35
PTPN9-206ENST00000618819 TNMDQ9H2S6 317 aa17.25■□□□□ 0.35
PTPN9-206ENST00000618819 ERC2O15083 957 aa17.24■□□□□ 0.35
PTPN9-206ENST00000618819 CCDC192P0DO97 292 aa17.24■□□□□ 0.35
PTPN9-206ENST00000618819 NEK4P51957 841 aa17.24■□□□□ 0.35
PTPN9-206ENST00000618819 MAP2K1Q02750 393 aaPredicted RBP17.24■□□□□ 0.35
PTPN9-206ENST00000618819 TEFQ10587 303 aa17.24■□□□□ 0.35
PTPN9-206ENST00000618819 ZFP91Q96JP5 570 aaPredicted RBP17.24■□□□□ 0.35
PTPN9-206ENST00000618819 TRAK1Q9UPV9 953 aa17.24■□□□□ 0.35
PTPN9-206ENST00000618819 SHTN1A0MZ66 631 aa17.24■□□□□ 0.35
PTPN9-206ENST00000618819 KRT18P05783 430 aaKnown RBP17.24■□□□□ 0.35
PTPN9-206ENST00000618819 EIF4G1Q04637 1599 aaKnown RBP17.23■□□□□ 0.35
PTPN9-206ENST00000618819 STK38Q15208 465 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms