RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 DISP3Q9P2K9 1392 aa17.46■□□□□ 0.39
CIITA-213ENST00000618327 AMOTL2Q9Y2J4 779 aa17.45■□□□□ 0.38
CIITA-213ENST00000618327 CFAP44Q96MT7 982 aa17.44■□□□□ 0.38
CIITA-213ENST00000618327 RTN4Q9NQC3 1192 aaKnown RBP17.44■□□□□ 0.38
CIITA-213ENST00000618327 CENPQQ7L2Z9 268 aaPredicted RBP17.44■□□□□ 0.38
CIITA-213ENST00000618327 GOLGA6L22H0YM25 854 aa17.43■□□□□ 0.38
CIITA-213ENST00000618327 RAPGEF4Q8WZA2 1011 aa17.43■□□□□ 0.38
CIITA-213ENST00000618327 WASLO00401 505 aaPredicted RBP17.43■□□□□ 0.38
CIITA-213ENST00000618327 NLRP2Q9NX02 1062 aa17.43■□□□□ 0.38
CIITA-213ENST00000618327 MBD5Q9P267 1494 aa17.43■□□□□ 0.38
CIITA-213ENST00000618327 DZIP1LQ8IYY4 767 aaKnown RBP17.42■□□□□ 0.38
CIITA-213ENST00000618327 ARHGEF5Q12774 1597 aa17.42■□□□□ 0.38
CIITA-213ENST00000618327 TSPYL4Q9UJ04 414 aa17.42■□□□□ 0.38
CIITA-213ENST00000618327 KCNJ4P48050 445 aa17.41■□□□□ 0.38
CIITA-213ENST00000618327 ARHGEF12Q9NZN5 1544 aa17.41■□□□□ 0.38
CIITA-213ENST00000618327 EIF2S2P20042 333 aaKnown RBP17.41■□□□□ 0.38
CIITA-213ENST00000618327 DDX19BQ9UMR2 479 aa17.41■□□□□ 0.38
CIITA-213ENST00000618327 NOP58Q9Y2X3 529 aaKnown RBP17.41■□□□□ 0.38
CIITA-213ENST00000618327 RRS1Q15050 365 aaKnown RBP17.4■□□□□ 0.38
CIITA-213ENST00000618327 TTC5Q8N0Z6 440 aa17.4■□□□□ 0.38
CIITA-213ENST00000618327 API5Q9BZZ5 524 aaKnown RBP17.4■□□□□ 0.38
CIITA-213ENST00000618327 KIF16BQ96L93 1317 aa17.4■□□□□ 0.38
CIITA-213ENST00000618327 MYO5CQ9NQX4 1742 aa17.4■□□□□ 0.38
CIITA-213ENST00000618327 NEO1Q92859 1461 aa17.4■□□□□ 0.38
CIITA-213ENST00000618327 SULT6B1Q6IMI4 303 aa17.39■□□□□ 0.38
CIITA-213ENST00000618327 GAS2L2Q8NHY3 880 aa17.39■□□□□ 0.37
CIITA-213ENST00000618327 TSHZ2Q9NRE2 1034 aa17.38■□□□□ 0.37
CIITA-213ENST00000618327 MAST1Q9Y2H9 1570 aa17.38■□□□□ 0.37
CIITA-213ENST00000618327 NCLP19338 710 aaKnown RBP17.38■□□□□ 0.37
CIITA-213ENST00000618327 NECTIN2Q92692 538 aa17.38■□□□□ 0.37
CIITA-213ENST00000618327 HSP90AB1P08238 724 aaKnown RBP17.37■□□□□ 0.37
CIITA-213ENST00000618327 GCC2Q8IWJ2 1684 aa17.37■□□□□ 0.37
CIITA-213ENST00000618327 ERCC6L2Q5T890 1561 aa17.37■□□□□ 0.37
CIITA-213ENST00000618327 ATP10AO60312 1499 aa17.37■□□□□ 0.37
CIITA-213ENST00000618327 NAP1L5Q96NT1 182 aaPredicted RBP17.36■□□□□ 0.37
CIITA-213ENST00000618327 ADGBQ8N7X0 1667 aa17.36■□□□□ 0.37
CIITA-213ENST00000618327 CHMP3Q9Y3E7 222 aa17.36■□□□□ 0.37
CIITA-213ENST00000618327 RIMS2Q9UQ26 1411 aa17.36■□□□□ 0.37
CIITA-213ENST00000618327 MCCP23508 829 aa17.36■□□□□ 0.37
CIITA-213ENST00000618327 HSCBQ8IWL3 235 aa17.35■□□□□ 0.37
CIITA-213ENST00000618327 ZMYM3Q14202 1370 aa17.35■□□□□ 0.37
CIITA-213ENST00000618327 EXOSC9Q06265 439 aaKnown RBP17.35■□□□□ 0.37
CIITA-213ENST00000618327 NME9Q86XW9 330 aa17.35■□□□□ 0.37
CIITA-213ENST00000618327 SAMD9LQ8IVG5 1584 aa17.34■□□□□ 0.37
CIITA-213ENST00000618327 FCHSD2O94868 740 aa17.34■□□□□ 0.37
CIITA-213ENST00000618327 EIF2AK4Q9P2K8 1649 aaKnown RBP17.34■□□□□ 0.37
CIITA-213ENST00000618327 TTC37Q6PGP7 1564 aa17.34■□□□□ 0.37
CIITA-213ENST00000618327 WDR63Q8IWG1 891 aa17.34■□□□□ 0.37
CIITA-213ENST00000618327 TESK2Q96S53 571 aa17.34■□□□□ 0.37
CIITA-213ENST00000618327 PTMAP06454 111 aaKnown RBP17.33■□□□□ 0.37
CIITA-213ENST00000618327 FKBP5Q13451 457 aaPredicted RBP17.33■□□□□ 0.37
CIITA-213ENST00000618327 PANK1Q8TE04 598 aa17.33■□□□□ 0.37
CIITA-213ENST00000618327 SMG6Q86US8 1419 aaKnown RBP17.33■□□□□ 0.36
CIITA-213ENST00000618327 NINLQ9Y2I6 1382 aa17.33■□□□□ 0.36
CIITA-213ENST00000618327 ZCCHC11Q5TAX3 1644 aaKnown RBP17.33■□□□□ 0.36
CIITA-213ENST00000618327 XPCQ01831 940 aaPredicted RBP17.33■□□□□ 0.36
CIITA-213ENST00000618327 FGD1P98174 961 aa17.32■□□□□ 0.36
CIITA-213ENST00000618327 PLEKHO1Q53GL0 409 aaPredicted RBP17.32■□□□□ 0.36
CIITA-213ENST00000618327 TSR2Q969E8 191 aaKnown RBP17.32■□□□□ 0.36
CIITA-213ENST00000618327 DNTTIP2Q5QJE6 756 aaKnown RBP17.32■□□□□ 0.36
CIITA-213ENST00000618327 ANKRD45Q5TZF3 282 aa17.32■□□□□ 0.36
CIITA-213ENST00000618327 UHRF1BP1Q6BDS2 1440 aa17.31■□□□□ 0.36
CIITA-213ENST00000618327 KIAA1211Q6ZU35 1233 aa17.31■□□□□ 0.36
CIITA-213ENST00000618327 RBM33Q96EV2 1170 aaKnown RBP17.31■□□□□ 0.36
CIITA-213ENST00000618327 AEBP2Q6ZN18 517 aaPredicted RBP17.31■□□□□ 0.36
CIITA-213ENST00000618327 NEXNQ0ZGT2 675 aa17.3■□□□□ 0.36
CIITA-213ENST00000618327 TAF7LQ5H9L4 462 aa17.3■□□□□ 0.36
CIITA-213ENST00000618327 PHF8Q9UPP1 1060 aa17.3■□□□□ 0.36
CIITA-213ENST00000618327 NSD2O96028 1365 aa17.3■□□□□ 0.36
CIITA-213ENST00000618327 MFAP1P55081 439 aaKnown RBP17.3■□□□□ 0.36
CIITA-213ENST00000618327 GPATCH3Q96I76 525 aa17.3■□□□□ 0.36
CIITA-213ENST00000618327 TRIM6-TRIM34B2RNG4 842 aa17.29■□□□□ 0.36
CIITA-213ENST00000618327 PREX2Q70Z35 1606 aa17.29■□□□□ 0.36
CIITA-213ENST00000618327 AAMPQ13685 434 aa17.29■□□□□ 0.36
CIITA-213ENST00000618327 WWC1Q8IX03 1113 aa17.29■□□□□ 0.36
CIITA-213ENST00000618327 TWISTNBQ3B726 338 aaPredicted RBP17.28■□□□□ 0.36
CIITA-213ENST00000618327 DDX58O95786 925 aaKnown RBP17.28■□□□□ 0.36
CIITA-213ENST00000618327 TMPOP42166 694 aaKnown RBP17.28■□□□□ 0.36
CIITA-213ENST00000618327 C9orf78Q9NZ63 289 aaPredicted RBP17.28■□□□□ 0.36
CIITA-213ENST00000618327 SYTL4Q96C24 671 aaPredicted RBP17.27■□□□□ 0.36
CIITA-213ENST00000618327 CFAP74Q9C0B2 1584 aa17.27■□□□□ 0.36
CIITA-213ENST00000618327 EMILIN1Q9Y6C2 1016 aa17.27■□□□□ 0.36
CIITA-213ENST00000618327 ABCC1P33527 1531 aa17.27■□□□□ 0.35
CIITA-213ENST00000618327 BCAR3O75815 825 aa17.27■□□□□ 0.35
CIITA-213ENST00000618327 GORABQ5T7V8 394 aa17.27■□□□□ 0.35
CIITA-213ENST00000618327 KCNH5Q8NCM2 988 aa17.27■□□□□ 0.35
CIITA-213ENST00000618327 AMER1Q5JTC6 1135 aaPredicted RBP17.26■□□□□ 0.35
CIITA-213ENST00000618327 PDE4AP27815 886 aa17.26■□□□□ 0.35
CIITA-213ENST00000618327 NFE2L2Q16236 605 aa17.26■□□□□ 0.35
CIITA-213ENST00000618327 KDM6BO15054 1643 aa17.25■□□□□ 0.35
CIITA-213ENST00000618327 FOXO3O43524 673 aa17.25■□□□□ 0.35
CIITA-213ENST00000618327 DEKP35659 375 aaKnown RBP17.25■□□□□ 0.35
CIITA-213ENST00000618327 CT47B1P0C2W7 299 aaPredicted RBP17.25■□□□□ 0.35
CIITA-213ENST00000618327 TATP17735 454 aaPredicted RBP17.25■□□□□ 0.35
CIITA-213ENST00000618327 SLFN5Q08AF3 891 aa17.25■□□□□ 0.35
CIITA-213ENST00000618327 FAM161AQ3B820 660 aa17.25■□□□□ 0.35
CIITA-213ENST00000618327 PDE3AQ14432 1141 aa17.25■□□□□ 0.35
CIITA-213ENST00000618327 USP35Q9P2H5 1018 aa17.25■□□□□ 0.35
CIITA-213ENST00000618327 YEATS2Q9ULM3 1422 aa17.25■□□□□ 0.35
CIITA-213ENST00000618327 ANKRD36BQ8N2N9 1353 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms