RNA–Protein interactions for RNA: ENST00000617641.4

PCDHGC3-205, Transcript of protocadherin gamma subfamily C, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGC3, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGC3-205ENST00000617641 NUDCQ9Y266 331 aa23.23■■□□□ 1.31
PCDHGC3-205ENST00000617641 INSRP06213 1382 aa23.23■■□□□ 1.31
PCDHGC3-205ENST00000617641 SRPK2P78362 688 aaKnown RBP23.22■■□□□ 1.31
PCDHGC3-205ENST00000617641 IRX6P78412 446 aaPredicted RBP23.22■■□□□ 1.31
PCDHGC3-205ENST00000617641 SALL2Q9Y467 1007 aaPredicted RBP23.22■■□□□ 1.31
PCDHGC3-205ENST00000617641 ANKRD36BQ8N2N9 1353 aa23.21■■□□□ 1.31
PCDHGC3-205ENST00000617641 ADAMTS8Q9UP79 889 aa23.21■■□□□ 1.31
PCDHGC3-205ENST00000617641 DLC1Q96QB1 1528 aa23.2■■□□□ 1.31
PCDHGC3-205ENST00000617641 TMEM2Q9UHN6 1383 aa23.2■■□□□ 1.3
PCDHGC3-205ENST00000617641 C3P01024 1663 aa23.2■■□□□ 1.3
PCDHGC3-205ENST00000617641 USP32Q8NFA0 1604 aa23.2■■□□□ 1.3
PCDHGC3-205ENST00000617641 FER1L4A9Z1Z3 1794 aa23.2■■□□□ 1.3
PCDHGC3-205ENST00000617641 METP08581 1390 aa23.19■■□□□ 1.3
PCDHGC3-205ENST00000617641 HDGFP51858 240 aaKnown RBP23.19■■□□□ 1.3
PCDHGC3-205ENST00000617641 WDR43Q15061 677 aaKnown RBP eCLIP23.19■■□□□ 1.3
PCDHGC3-205ENST00000617641 WAPLQ7Z5K2 1190 aa23.18■■□□□ 1.3
PCDHGC3-205ENST00000617641 NLRP1Q9C000 1473 aa23.18■■□□□ 1.3
PCDHGC3-205ENST00000617641 PLPPR3Q6T4P5 718 aa23.17■■□□□ 1.3
PCDHGC3-205ENST00000617641 PLEKHH1Q9ULM0 1364 aa23.17■■□□□ 1.3
PCDHGC3-205ENST00000617641 ABCC11Q96J66 1382 aa23.17■■□□□ 1.3
PCDHGC3-205ENST00000617641 ATAD2Q6PL18 1390 aa23.16■■□□□ 1.3
PCDHGC3-205ENST00000617641 CGNL1Q0VF96 1302 aa23.16■■□□□ 1.3
PCDHGC3-205ENST00000617641 MORC1Q86VD1 984 aa23.16■■□□□ 1.3
PCDHGC3-205ENST00000617641 NINLQ9Y2I6 1382 aa23.16■■□□□ 1.3
PCDHGC3-205ENST00000617641 CDK19Q9BWU1 502 aa23.15■■□□□ 1.3
PCDHGC3-205ENST00000617641 A0A1W2PP64 1363 aa23.14■■□□□ 1.3
PCDHGC3-205ENST00000617641 TNNT2P45379 298 aaPredicted RBP23.13■■□□□ 1.29
PCDHGC3-205ENST00000617641 LTKP29376 864 aa23.1■■□□□ 1.29
PCDHGC3-205ENST00000617641 TXNDC2Q86VQ3 553 aa23.1■■□□□ 1.29
PCDHGC3-205ENST00000617641 CD163L1Q9NR16 1453 aa23.09■■□□□ 1.29
PCDHGC3-205ENST00000617641 KNDC1Q76NI1 1749 aa23.09■■□□□ 1.29
PCDHGC3-205ENST00000617641 PDE3BQ13370 1112 aa23.08■■□□□ 1.29
PCDHGC3-205ENST00000617641 NSD2O96028 1365 aa23.08■■□□□ 1.29
PCDHGC3-205ENST00000617641 ADAMTS13Q76LX8 1427 aa23.08■■□□□ 1.29
PCDHGC3-205ENST00000617641 TERF2IPQ9NYB0 399 aa23.08■■□□□ 1.28
PCDHGC3-205ENST00000617641 POLR3AO14802 1390 aaPredicted RBP23.08■■□□□ 1.28
PCDHGC3-205ENST00000617641 PLEKHG1Q9ULL1 1385 aa23.07■■□□□ 1.28
PCDHGC3-205ENST00000617641 CDCA7LQ96GN5 454 aa23.07■■□□□ 1.28
PCDHGC3-205ENST00000617641 TECPR2O15040 1411 aa23.06■■□□□ 1.28
PCDHGC3-205ENST00000617641 CABP1Q9NZU7 370 aa23.05■■□□□ 1.28
PCDHGC3-205ENST00000617641 CPS1P31327 1500 aa23.05■■□□□ 1.28
PCDHGC3-205ENST00000617641 CCDC146Q8IYE0 955 aa23.04■■□□□ 1.28
PCDHGC3-205ENST00000617641 FAM135BQ49AJ0 1406 aa23.04■■□□□ 1.28
PCDHGC3-205ENST00000617641 RNF123Q5XPI4 1314 aa23.03■■□□□ 1.28
PCDHGC3-205ENST00000617641 ERICH6BQ5W0A0 696 aa23.03■■□□□ 1.28
PCDHGC3-205ENST00000617641 SLIT1O75093 1534 aa23.03■■□□□ 1.28
PCDHGC3-205ENST00000617641 HDGFL2Q7Z4V5 671 aaPredicted RBP23.02■■□□□ 1.28
PCDHGC3-205ENST00000617641 EID1Q9Y6B2 187 aa23.02■■□□□ 1.28
PCDHGC3-205ENST00000617641 ARHGAP23Q9P227 1491 aa23.02■■□□□ 1.28
PCDHGC3-205ENST00000617641 SHPRHQ149N8 1683 aa23.02■■□□□ 1.28
PCDHGC3-205ENST00000617641 WASLO00401 505 aaPredicted RBP23.02■■□□□ 1.28
PCDHGC3-205ENST00000617641 MTHFSP49914 203 aa23.02■■□□□ 1.28
PCDHGC3-205ENST00000617641 SIRT1Q96EB6 747 aa23.02■■□□□ 1.28
PCDHGC3-205ENST00000617641 GGNBP2Q9H3C7 697 aa23.01■■□□□ 1.27
PCDHGC3-205ENST00000617641 ROBO2Q9HCK4 1378 aa23■■□□□ 1.27
PCDHGC3-205ENST00000617641 SLC26A8Q96RN1 970 aa22.99■■□□□ 1.27
PCDHGC3-205ENST00000617641 MED14O60244 1454 aa22.99■■□□□ 1.27
PCDHGC3-205ENST00000617641 RIMS1Q86UR5 1692 aaKnown RBP22.98■■□□□ 1.27
PCDHGC3-205ENST00000617641 FYB1O15117 783 aa22.98■■□□□ 1.27
PCDHGC3-205ENST00000617641 ANKRD26Q9UPS8 1709 aa22.98■■□□□ 1.27
PCDHGC3-205ENST00000617641 DNAJC5Q9H3Z4 198 aa22.98■■□□□ 1.27
PCDHGC3-205ENST00000617641 ATP7BP35670 1465 aa22.98■■□□□ 1.27
PCDHGC3-205ENST00000617641 THEMISQ8N1K5 641 aaPredicted RBP22.97■■□□□ 1.27
PCDHGC3-205ENST00000617641 APAF1O14727 1248 aa22.96■■□□□ 1.27
PCDHGC3-205ENST00000617641 PPP4R2Q9NY27 417 aa22.96■■□□□ 1.27
PCDHGC3-205ENST00000617641 RCAN3Q9UKA8 241 aa22.96■■□□□ 1.27
PCDHGC3-205ENST00000617641 ZNF521Q96K83 1311 aa22.95■■□□□ 1.27
PCDHGC3-205ENST00000617641 CFAP53Q96M91 514 aa22.95■■□□□ 1.26
PCDHGC3-205ENST00000617641 PPIP5K1Q6PFW1 1433 aa22.95■■□□□ 1.26
PCDHGC3-205ENST00000617641 PTPRUQ92729 1446 aa22.95■■□□□ 1.26
PCDHGC3-205ENST00000617641 KIF20BQ96Q89 1820 aa22.95■■□□□ 1.26
PCDHGC3-205ENST00000617641 NUDT16Q96DE0 195 aaKnown RBP22.93■■□□□ 1.26
PCDHGC3-205ENST00000617641 NCKAP5LQ9HCH0 1330 aa22.92■■□□□ 1.26
PCDHGC3-205ENST00000617641 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.92■■□□□ 1.26
PCDHGC3-205ENST00000617641 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.92■■□□□ 1.26
PCDHGC3-205ENST00000617641 CEP170BQ9Y4F5 1589 aaPredicted RBP22.92■■□□□ 1.26
PCDHGC3-205ENST00000617641 CPSF1Q10570 1443 aaKnown RBP22.9■■□□□ 1.26
PCDHGC3-205ENST00000617641 TBX22Q9Y458 520 aa22.9■■□□□ 1.26
PCDHGC3-205ENST00000617641 RRP1P56182 461 aaKnown RBP22.9■■□□□ 1.26
PCDHGC3-205ENST00000617641 GOLGA2Q08379 1002 aa22.9■■□□□ 1.26
PCDHGC3-205ENST00000617641 PRR36Q9H6K5 1346 aa22.89■■□□□ 1.25
PCDHGC3-205ENST00000617641 ADGRB2O60241 1585 aa22.88■■□□□ 1.25
PCDHGC3-205ENST00000617641 CCDC61Q9Y6R9 512 aa22.88■■□□□ 1.25
PCDHGC3-205ENST00000617641 CDC42BPGQ6DT37 1551 aa22.88■■□□□ 1.25
PCDHGC3-205ENST00000617641 AMOTL2Q9Y2J4 779 aa22.88■■□□□ 1.25
PCDHGC3-205ENST00000617641 ADAMTSL3P82987 1691 aa22.87■■□□□ 1.25
PCDHGC3-205ENST00000617641 DUSP27Q5VZP5 1158 aa22.87■■□□□ 1.25
PCDHGC3-205ENST00000617641 EDC4Q6P2E9 1401 aaKnown RBP22.86■■□□□ 1.25
PCDHGC3-205ENST00000617641 DIP2AQ14689 1571 aa22.86■■□□□ 1.25
PCDHGC3-205ENST00000617641 B4GALNT3Q6L9W6 998 aa22.86■■□□□ 1.25
PCDHGC3-205ENST00000617641 RUNDC1Q96C34 613 aa22.85■■□□□ 1.25
PCDHGC3-205ENST00000617641 COL3A1P02461 1466 aaPredicted RBP22.84■■□□□ 1.25
PCDHGC3-205ENST00000617641 SLFN5Q08AF3 891 aa22.84■■□□□ 1.25
PCDHGC3-205ENST00000617641 MON2Q7Z3U7 1717 aa22.84■■□□□ 1.25
PCDHGC3-205ENST00000617641 U2AF1L5P0DN76 240 aaPredicted RBP22.83■■□□□ 1.25
PCDHGC3-205ENST00000617641 U2AF1Q01081 240 aaKnown RBP eCLIP22.83■■□□□ 1.25
PCDHGC3-205ENST00000617641 NGEFQ8N5V2 710 aa22.83■■□□□ 1.25
PCDHGC3-205ENST00000617641 ITSN1Q15811 1721 aa22.83■■□□□ 1.24
PCDHGC3-205ENST00000617641 IQSEC2Q5JU85 1478 aa22.82■■□□□ 1.24
PCDHGC3-205ENST00000617641 SPINK5Q9NQ38 1064 aaPredicted RBP22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms