RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 SLC26A8Q96RN1 970 aa10.53□□□□□ -0.72
NEK3-207ENST00000617054 SETBP1Q9Y6X0 1596 aa10.53□□□□□ -0.72
NEK3-207ENST00000617054 YTHDC2Q9H6S0 1430 aaKnown RBP10.52□□□□□ -0.73
NEK3-207ENST00000617054 METP08581 1390 aa10.52□□□□□ -0.73
NEK3-207ENST00000617054 PLEKHH1Q9ULM0 1364 aa10.52□□□□□ -0.73
NEK3-207ENST00000617054 SUPT16HQ9Y5B9 1047 aaKnown RBP10.52□□□□□ -0.73
NEK3-207ENST00000617054 QRICH2Q9H0J4 1663 aa10.51□□□□□ -0.73
NEK3-207ENST00000617054 ALKQ9UM73 1620 aa10.51□□□□□ -0.73
NEK3-207ENST00000617054 ZFYVE9O95405 1425 aa10.51□□□□□ -0.73
NEK3-207ENST00000617054 EVC2Q86UK5 1308 aa10.51□□□□□ -0.73
NEK3-207ENST00000617054 PPP2R1AP30153 589 aa10.51□□□□□ -0.73
NEK3-207ENST00000617054 MYOM1P52179 1685 aa10.51□□□□□ -0.73
NEK3-207ENST00000617054 KDM5AP29375 1690 aaKnown RBP10.51□□□□□ -0.73
NEK3-207ENST00000617054 PTPRMP28827 1452 aa10.5□□□□□ -0.73
NEK3-207ENST00000617054 NUTM2FA1L443 756 aa10.5□□□□□ -0.73
NEK3-207ENST00000617054 BRD4O60885 1362 aaPredicted RBP10.5□□□□□ -0.73
NEK3-207ENST00000617054 NCKAP5LQ9HCH0 1330 aa10.5□□□□□ -0.73
NEK3-207ENST00000617054 CDK19Q9BWU1 502 aa10.5□□□□□ -0.73
NEK3-207ENST00000617054 ARHGEF28Q8N1W1 1705 aaKnown RBP10.49□□□□□ -0.73
NEK3-207ENST00000617054 ADAMTS8Q9UP79 889 aa10.48□□□□□ -0.73
NEK3-207ENST00000617054 TMEM2Q9UHN6 1383 aa10.48□□□□□ -0.73
NEK3-207ENST00000617054 TULP4Q9NRJ4 1543 aa10.48□□□□□ -0.73
NEK3-207ENST00000617054 SBNO2Q9Y2G9 1366 aa10.48□□□□□ -0.73
NEK3-207ENST00000617054 NSD3Q9BZ95 1437 aa10.48□□□□□ -0.73
NEK3-207ENST00000617054 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.48□□□□□ -0.73
NEK3-207ENST00000617054 CABP1Q9NZU7 370 aa10.48□□□□□ -0.73
NEK3-207ENST00000617054 ZBED9Q6R2W3 1325 aa10.47□□□□□ -0.73
NEK3-207ENST00000617054 MYO3AQ8NEV4 1616 aa10.47□□□□□ -0.73
NEK3-207ENST00000617054 DAXXQ9UER7 740 aaPredicted RBP10.47□□□□□ -0.73
NEK3-207ENST00000617054 FBLN1P23142 703 aa10.46□□□□□ -0.73
NEK3-207ENST00000617054 HDGFP51858 240 aaKnown RBP10.46□□□□□ -0.74
NEK3-207ENST00000617054 MORC1Q86VD1 984 aa10.46□□□□□ -0.74
NEK3-207ENST00000617054 C3P01024 1663 aa10.46□□□□□ -0.74
NEK3-207ENST00000617054 CCDC146Q8IYE0 955 aa10.45□□□□□ -0.74
NEK3-207ENST00000617054 RBM33Q96EV2 1170 aaKnown RBP10.45□□□□□ -0.74
NEK3-207ENST00000617054 GGNBP2Q9H3C7 697 aa10.45□□□□□ -0.74
NEK3-207ENST00000617054 LRPPRCP42704 1394 aaKnown RBP10.45□□□□□ -0.74
NEK3-207ENST00000617054 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.45□□□□□ -0.74
NEK3-207ENST00000617054 EID1Q9Y6B2 187 aa10.45□□□□□ -0.74
NEK3-207ENST00000617054 FER1L4A9Z1Z3 1794 aa10.44□□□□□ -0.74
NEK3-207ENST00000617054 UBR1Q8IWV7 1749 aa10.44□□□□□ -0.74
NEK3-207ENST00000617054 CDCA7LQ96GN5 454 aa10.44□□□□□ -0.74
NEK3-207ENST00000617054 NRXN3Q9Y4C0 1643 aa10.43□□□□□ -0.74
NEK3-207ENST00000617054 A0A1W2PP64 1363 aa10.43□□□□□ -0.74
NEK3-207ENST00000617054 WDR43Q15061 677 aaKnown RBP eCLIP10.43□□□□□ -0.74
NEK3-207ENST00000617054 THEMISQ8N1K5 641 aaPredicted RBP10.42□□□□□ -0.74
NEK3-207ENST00000617054 ROBO2Q9HCK4 1378 aa10.42□□□□□ -0.74
NEK3-207ENST00000617054 ABCC11Q96J66 1382 aa10.41□□□□□ -0.74
NEK3-207ENST00000617054 CGNL1Q0VF96 1302 aa10.41□□□□□ -0.74
NEK3-207ENST00000617054 NEFLP07196 543 aa10.41□□□□□ -0.74
NEK3-207ENST00000617054 MTHFSP49914 203 aa10.41□□□□□ -0.74
NEK3-207ENST00000617054 AMOTL2Q9Y2J4 779 aa10.41□□□□□ -0.74
NEK3-207ENST00000617054 ADAMTS13Q76LX8 1427 aa10.41□□□□□ -0.74
NEK3-207ENST00000617054 WASLO00401 505 aaPredicted RBP10.41□□□□□ -0.74
NEK3-207ENST00000617054 ANKRD36BQ8N2N9 1353 aa10.4□□□□□ -0.74
NEK3-207ENST00000617054 ZRANB1Q9UGI0 708 aa10.4□□□□□ -0.74
NEK3-207ENST00000617054 SETD1AO15047 1707 aaKnown RBP10.4□□□□□ -0.74
NEK3-207ENST00000617054 RIMS1Q86UR5 1692 aaKnown RBP10.4□□□□□ -0.74
NEK3-207ENST00000617054 FYB1O15117 783 aa10.4□□□□□ -0.74
NEK3-207ENST00000617054 NLRP1Q9C000 1473 aa10.4□□□□□ -0.75
NEK3-207ENST00000617054 NUDT16Q96DE0 195 aaKnown RBP10.39□□□□□ -0.75
NEK3-207ENST00000617054 TERF2IPQ9NYB0 399 aa10.39□□□□□ -0.75
NEK3-207ENST00000617054 PTPRUQ92729 1446 aa10.39□□□□□ -0.75
NEK3-207ENST00000617054 PPM1GO15355 546 aaPredicted RBP10.39□□□□□ -0.75
NEK3-207ENST00000617054 NEUROD2Q15784 382 aa10.38□□□□□ -0.75
NEK3-207ENST00000617054 NPC1L1Q9UHC9 1359 aa10.38□□□□□ -0.75
NEK3-207ENST00000617054 HDGFL2Q7Z4V5 671 aaPredicted RBP10.38□□□□□ -0.75
NEK3-207ENST00000617054 PLEKHG1Q9ULL1 1385 aa10.38□□□□□ -0.75
NEK3-207ENST00000617054 CD163L1Q9NR16 1453 aa10.38□□□□□ -0.75
NEK3-207ENST00000617054 APAF1O14727 1248 aa10.38□□□□□ -0.75
NEK3-207ENST00000617054 NUDCQ9Y266 331 aa10.38□□□□□ -0.75
NEK3-207ENST00000617054 ATAD2Q6PL18 1390 aa10.38□□□□□ -0.75
NEK3-207ENST00000617054 PRR36Q9H6K5 1346 aa10.37□□□□□ -0.75
NEK3-207ENST00000617054 KCNA6P17658 529 aa10.37□□□□□ -0.75
NEK3-207ENST00000617054 PMFBP1Q8TBY8 1022 aa10.37□□□□□ -0.75
NEK3-207ENST00000617054 PUS7Q96PZ0 661 aaKnown RBP10.37□□□□□ -0.75
NEK3-207ENST00000617054 RRP7AQ9Y3A4 280 aaKnown RBP10.37□□□□□ -0.75
NEK3-207ENST00000617054 NME9Q86XW9 330 aa10.36□□□□□ -0.75
NEK3-207ENST00000617054 CFAP44Q96MT7 982 aa10.36□□□□□ -0.75
NEK3-207ENST00000617054 PPIP5K1Q6PFW1 1433 aa10.35□□□□□ -0.75
NEK3-207ENST00000617054 SOX12O15370 315 aa10.35□□□□□ -0.75
NEK3-207ENST00000617054 CCDC61Q9Y6R9 512 aa10.35□□□□□ -0.75
NEK3-207ENST00000617054 TBX22Q9Y458 520 aa10.34□□□□□ -0.75
NEK3-207ENST00000617054 ANKLE2Q86XL3 938 aa10.34□□□□□ -0.75
NEK3-207ENST00000617054 U2SURPO15042 1029 aaKnown RBP10.34□□□□□ -0.75
NEK3-207ENST00000617054 DMRT2Q9Y5R5 561 aa10.34□□□□□ -0.75
NEK3-207ENST00000617054 DLC1Q96QB1 1528 aa10.33□□□□□ -0.76
NEK3-207ENST00000617054 SPINK5Q9NQ38 1064 aaPredicted RBP10.33□□□□□ -0.76
NEK3-207ENST00000617054 SMG6Q86US8 1419 aaKnown RBP10.33□□□□□ -0.76
NEK3-207ENST00000617054 U2AF1L5P0DN76 240 aaPredicted RBP10.33□□□□□ -0.76
NEK3-207ENST00000617054 U2AF1Q01081 240 aaKnown RBP eCLIP10.33□□□□□ -0.76
NEK3-207ENST00000617054 BLMP54132 1417 aaPredicted RBP10.33□□□□□ -0.76
NEK3-207ENST00000617054 SLIT1O75093 1534 aa10.32□□□□□ -0.76
NEK3-207ENST00000617054 ARHGAP23Q9P227 1491 aa10.32□□□□□ -0.76
NEK3-207ENST00000617054 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.32□□□□□ -0.76
NEK3-207ENST00000617054 CEP170BQ9Y4F5 1589 aaPredicted RBP10.32□□□□□ -0.76
NEK3-207ENST00000617054 RRS1Q15050 365 aaKnown RBP10.32□□□□□ -0.76
NEK3-207ENST00000617054 MED14O60244 1454 aa10.32□□□□□ -0.76
NEK3-207ENST00000617054 ACEP12821 1306 aa10.32□□□□□ -0.76
NEK3-207ENST00000617054 PLIN1O60240 522 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms