RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 RGL3Q3MIN7 710 aa28.22■■■□□ 2.11
CDX1-202ENST00000616154 ACIN1Q9UKV3 1341 aaKnown RBP28.2■■■□□ 2.11
CDX1-202ENST00000616154 PIK3C2GO75747 1445 aa28.2■■■□□ 2.1
CDX1-202ENST00000616154 LRPPRCP42704 1394 aaKnown RBP28.2■■■□□ 2.1
CDX1-202ENST00000616154 C8orf37Q96NL8 207 aa28.18■■■□□ 2.1
CDX1-202ENST00000616154 COL22A1Q8NFW1 1626 aaPredicted RBP28.18■■■□□ 2.1
CDX1-202ENST00000616154 ABCC11Q96J66 1382 aa28.16■■■□□ 2.1
CDX1-202ENST00000616154 UPF1Q92900 1129 aaKnown RBP eCLIP28.14■■■□□ 2.09
CDX1-202ENST00000616154 STK26Q9P289 416 aa28.14■■■□□ 2.09
CDX1-202ENST00000616154 NPHP3Q7Z494 1330 aa28.12■■■□□ 2.09
CDX1-202ENST00000616154 ADAMTS2O95450 1211 aa28.12■■■□□ 2.09
CDX1-202ENST00000616154 WAPLQ7Z5K2 1190 aa28.12■■■□□ 2.09
CDX1-202ENST00000616154 PXDNQ92626 1479 aa28.11■■■□□ 2.09
CDX1-202ENST00000616154 YTHDC2Q9H6S0 1430 aaKnown RBP28.11■■■□□ 2.09
CDX1-202ENST00000616154 FMN2Q9NZ56 1722 aa28.11■■■□□ 2.09
CDX1-202ENST00000616154 ESCO1Q5FWF5 840 aa28.11■■■□□ 2.09
CDX1-202ENST00000616154 TMEM132EQ6IEE7 984 aa28.11■■■□□ 2.09
CDX1-202ENST00000616154 QTRT2Q9H974 415 aaKnown RBP28.11■■■□□ 2.09
CDX1-202ENST00000616154 RBM6P78332 1123 aaKnown RBP28.1■■■□□ 2.09
CDX1-202ENST00000616154 NGLY1Q96IV0 654 aa28.1■■■□□ 2.09
CDX1-202ENST00000616154 NRXN1Q9ULB1 1477 aa28.1■■■□□ 2.09
CDX1-202ENST00000616154 MYOM2P54296 1465 aa28.09■■■□□ 2.09
CDX1-202ENST00000616154 PLEKHH1Q9ULM0 1364 aa28.09■■■□□ 2.09
CDX1-202ENST00000616154 RGS12O14924 1447 aa28.08■■■□□ 2.09
CDX1-202ENST00000616154 MARF1Q9Y4F3 1742 aaKnown RBP28.06■■■□□ 2.08
CDX1-202ENST00000616154 KIF1AQ12756 1690 aa28.05■■■□□ 2.08
CDX1-202ENST00000616154 C14orf93Q9H972 538 aaKnown RBP28.05■■■□□ 2.08
CDX1-202ENST00000616154 SIRT1Q96EB6 747 aa28.04■■■□□ 2.08
CDX1-202ENST00000616154 FOXO3O43524 673 aa28.03■■■□□ 2.08
CDX1-202ENST00000616154 RAB3GAP2Q9H2M9 1393 aa28.03■■■□□ 2.08
CDX1-202ENST00000616154 FNBP4Q8N3X1 1017 aaPredicted RBP28.02■■■□□ 2.08
CDX1-202ENST00000616154 USP21Q9UK80 565 aa28.02■■■□□ 2.08
CDX1-202ENST00000616154 NUTM2FA1L443 756 aa28.01■■■□□ 2.07
CDX1-202ENST00000616154 XPCQ01831 940 aaPredicted RBP27.99■■■□□ 2.07
CDX1-202ENST00000616154 DHX57Q6P158 1386 aaKnown RBP27.99■■■□□ 2.07
CDX1-202ENST00000616154 RGPD8O14715 1765 aaPredicted RBP27.99■■■□□ 2.07
CDX1-202ENST00000616154 TRPC5Q9UL62 973 aaPredicted RBP27.98■■■□□ 2.07
CDX1-202ENST00000616154 ATRNO75882 1429 aa27.97■■■□□ 2.07
CDX1-202ENST00000616154 CFAP70Q5T0N1 1121 aa27.97■■■□□ 2.07
CDX1-202ENST00000616154 DLC1Q96QB1 1528 aa27.95■■■□□ 2.06
CDX1-202ENST00000616154 HRCP23327 699 aa27.92■■■□□ 2.06
CDX1-202ENST00000616154 BCL9LQ86UU0 1499 aa27.92■■■□□ 2.06
CDX1-202ENST00000616154 SPATA31A3Q5VYP0 1347 aa27.92■■■□□ 2.06
CDX1-202ENST00000616154 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.92■■■□□ 2.06
CDX1-202ENST00000616154 ADGRB1O14514 1584 aa27.9■■■□□ 2.06
CDX1-202ENST00000616154 PRAM1Q96QH2 718 aa27.9■■■□□ 2.06
CDX1-202ENST00000616154 ADGRB2O60241 1585 aa27.89■■■□□ 2.05
CDX1-202ENST00000616154 ATAD2Q6PL18 1390 aa27.88■■■□□ 2.05
CDX1-202ENST00000616154 KRT28Q7Z3Y7 464 aa27.88■■■□□ 2.05
CDX1-202ENST00000616154 PHF8Q9UPP1 1060 aa27.88■■■□□ 2.05
CDX1-202ENST00000616154 USP32Q8NFA0 1604 aa27.87■■■□□ 2.05
CDX1-202ENST00000616154 TNS3Q68CZ2 1445 aa27.86■■■□□ 2.05
CDX1-202ENST00000616154 SAFB2Q14151 953 aaKnown RBP eCLIP27.85■■■□□ 2.05
CDX1-202ENST00000616154 ANKARQ7Z5J8 1434 aa27.84■■■□□ 2.05
CDX1-202ENST00000616154 SLIT2O94813 1529 aa27.84■■■□□ 2.05
CDX1-202ENST00000616154 PSME1Q06323 249 aa27.83■■■□□ 2.05
CDX1-202ENST00000616154 POGKQ9P215 609 aa27.83■■■□□ 2.05
CDX1-202ENST00000616154 SBNO1A3KN83 1393 aa27.82■■■□□ 2.04
CDX1-202ENST00000616154 ABCA3Q99758 1704 aa27.82■■■□□ 2.04
CDX1-202ENST00000616154 GJD4Q96KN9 370 aaPredicted RBP27.8■■■□□ 2.04
CDX1-202ENST00000616154 UNC5CLQ8IV45 518 aa27.78■■■□□ 2.04
CDX1-202ENST00000616154 STAC3Q96MF2 364 aa27.78■■■□□ 2.04
CDX1-202ENST00000616154 GLI3P10071 1580 aa27.78■■■□□ 2.04
CDX1-202ENST00000616154 DCAF11Q8TEB1 546 aa27.77■■■□□ 2.04
CDX1-202ENST00000616154 EP400Q96L91 3159 aa27.77■■■□□ 2.04
CDX1-202ENST00000616154 ARHGEF10O15013 1369 aa27.77■■■□□ 2.04
CDX1-202ENST00000616154 TRAK1Q9UPV9 953 aa27.76■■■□□ 2.03
CDX1-202ENST00000616154 KDM2AQ9Y2K7 1162 aa27.76■■■□□ 2.03
CDX1-202ENST00000616154 PLCH1Q4KWH8 1693 aa27.76■■■□□ 2.03
CDX1-202ENST00000616154 NWD2Q9ULI1 1742 aa27.76■■■□□ 2.03
CDX1-202ENST00000616154 RALGAPBQ86X10 1494 aa27.76■■■□□ 2.03
CDX1-202ENST00000616154 TRPM3Q9HCF6 1732 aaPredicted RBP27.75■■■□□ 2.03
CDX1-202ENST00000616154 EIF3AQ14152 1382 aaKnown RBP27.75■■■□□ 2.03
CDX1-202ENST00000616154 TULP4Q9NRJ4 1543 aa27.74■■■□□ 2.03
CDX1-202ENST00000616154 HAP1P54257 671 aaPredicted RBP27.73■■■□□ 2.03
CDX1-202ENST00000616154 ARHGEF28Q8N1W1 1705 aaKnown RBP27.72■■■□□ 2.03
CDX1-202ENST00000616154 PMFBP1Q8TBY8 1022 aa27.72■■■□□ 2.03
CDX1-202ENST00000616154 CABLES1Q8TDN4 633 aa27.72■■■□□ 2.03
CDX1-202ENST00000616154 HIRIP3Q9BW71 556 aaPredicted RBP27.71■■■□□ 2.03
CDX1-202ENST00000616154 ALS2Q96Q42 1657 aa27.71■■■□□ 2.03
CDX1-202ENST00000616154 MINK1Q8N4C8 1332 aaPredicted RBP27.7■■■□□ 2.03
CDX1-202ENST00000616154 LMOD2Q6P5Q4 547 aa27.69■■■□□ 2.02
CDX1-202ENST00000616154 BRWD3Q6RI45 1802 aa27.69■■■□□ 2.02
CDX1-202ENST00000616154 PRR36Q9H6K5 1346 aa27.69■■■□□ 2.02
CDX1-202ENST00000616154 WASLO00401 505 aaPredicted RBP27.67■■■□□ 2.02
CDX1-202ENST00000616154 ITSN1Q15811 1721 aa27.67■■■□□ 2.02
CDX1-202ENST00000616154 CCDC125Q86Z20 511 aa27.67■■■□□ 2.02
CDX1-202ENST00000616154 GPRASP1Q5JY77 1395 aa27.66■■■□□ 2.02
CDX1-202ENST00000616154 VPS72Q15906 364 aa27.66■■■□□ 2.02
CDX1-202ENST00000616154 PLEKHG5O94827 1062 aa27.65■■■□□ 2.02
CDX1-202ENST00000616154 NRAPQ86VF7 1730 aa27.64■■■□□ 2.02
CDX1-202ENST00000616154 KIAA1210Q9ULL0 1709 aa27.64■■■□□ 2.02
CDX1-202ENST00000616154 CRYBG1Q9Y4K1 1723 aa27.62■■■□□ 2.01
CDX1-202ENST00000616154 ATP7BP35670 1465 aa27.61■■■□□ 2.01
CDX1-202ENST00000616154 COL14A1Q05707 1796 aaKnown RBP27.61■■■□□ 2.01
CDX1-202ENST00000616154 FAM83GA6ND36 823 aa27.6■■■□□ 2.01
CDX1-202ENST00000616154 ONECUT3O60422 494 aaPredicted RBP27.58■■■□□ 2.01
CDX1-202ENST00000616154 SEPT12Q8IYM1 358 aa27.58■■■□□ 2.01
CDX1-202ENST00000616154 NGDNQ8NEJ9 315 aaKnown RBP27.58■■■□□ 2.01
CDX1-202ENST00000616154 BLMP54132 1417 aaPredicted RBP27.58■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms