RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 LRPPRCP42704 1394 aaKnown RBP8.29□□□□□ -1.08
CPNE3-208ENST00000614678 RGS17Q9UGC6 210 aaPredicted RBP8.29□□□□□ -1.08
CPNE3-208ENST00000614678 FAM135BQ49AJ0 1406 aa8.28□□□□□ -1.08
CPNE3-208ENST00000614678 FOXO3O43524 673 aa8.28□□□□□ -1.08
CPNE3-208ENST00000614678 CADPS2Q86UW7 1296 aa8.28□□□□□ -1.08
CPNE3-208ENST00000614678 PTCH1Q13635 1447 aa8.28□□□□□ -1.08
CPNE3-208ENST00000614678 ESCO1Q5FWF5 840 aa8.28□□□□□ -1.08
CPNE3-208ENST00000614678 C1orf167Q5SNV9 1468 aa8.28□□□□□ -1.08
CPNE3-208ENST00000614678 PHLPP1O60346 1717 aa8.27□□□□□ -1.09
CPNE3-208ENST00000614678 ABCC11Q96J66 1382 aa8.27□□□□□ -1.09
CPNE3-208ENST00000614678 PMFBP1Q8TBY8 1022 aa8.27□□□□□ -1.09
CPNE3-208ENST00000614678 PRAG1Q86YV5 1406 aa8.27□□□□□ -1.09
CPNE3-208ENST00000614678 NUTM2BA6NNL0 878 aaPredicted RBP8.27□□□□□ -1.09
CPNE3-208ENST00000614678 NUTM2EB1AL46 878 aaPredicted RBP8.27□□□□□ -1.09
CPNE3-208ENST00000614678 NUTM2AQ8IVF1 878 aaPredicted RBP8.27□□□□□ -1.09
CPNE3-208ENST00000614678 COL16A1Q07092 1604 aaPredicted RBP8.27□□□□□ -1.09
CPNE3-208ENST00000614678 PRR36Q9H6K5 1346 aa8.26□□□□□ -1.09
CPNE3-208ENST00000614678 MED1Q15648 1581 aaPredicted RBP8.26□□□□□ -1.09
CPNE3-208ENST00000614678 LRP6O75581 1613 aa8.26□□□□□ -1.09
CPNE3-208ENST00000614678 TECPR2O15040 1411 aa8.26□□□□□ -1.09
CPNE3-208ENST00000614678 POGKQ9P215 609 aa8.25□□□□□ -1.09
CPNE3-208ENST00000614678 USP32Q8NFA0 1604 aa8.24□□□□□ -1.09
CPNE3-208ENST00000614678 ARHGEF28Q8N1W1 1705 aaKnown RBP8.24□□□□□ -1.09
CPNE3-208ENST00000614678 CABLES1Q8TDN4 633 aa8.24□□□□□ -1.09
CPNE3-208ENST00000614678 KNDC1Q76NI1 1749 aa8.24□□□□□ -1.09
CPNE3-208ENST00000614678 NCOA3Q9Y6Q9 1424 aa8.23□□□□□ -1.09
CPNE3-208ENST00000614678 POTEAQ6S8J7 498 aa8.23□□□□□ -1.09
CPNE3-208ENST00000614678 CABP2Q9NPB3 220 aa8.22□□□□□ -1.09
CPNE3-208ENST00000614678 ADAMTS2O95450 1211 aa8.22□□□□□ -1.09
CPNE3-208ENST00000614678 TRPM1Q7Z4N2 1603 aa8.21□□□□□ -1.09
CPNE3-208ENST00000614678 DCCP43146 1447 aa8.21□□□□□ -1.09
CPNE3-208ENST00000614678 FMN2Q9NZ56 1722 aa8.21□□□□□ -1.09
CPNE3-208ENST00000614678 NHSL1Q5SYE7 1610 aa8.21□□□□□ -1.09
CPNE3-208ENST00000614678 NUTM2GQ5VZR2 741 aa8.21□□□□□ -1.09
CPNE3-208ENST00000614678 CDC42BPGQ6DT37 1551 aa8.21□□□□□ -1.1
CPNE3-208ENST00000614678 LAMC1P11047 1609 aa8.21□□□□□ -1.1
CPNE3-208ENST00000614678 CDK19Q9BWU1 502 aa8.21□□□□□ -1.1
CPNE3-208ENST00000614678 AHDC1Q5TGY3 1603 aaPredicted RBP8.2□□□□□ -1.1
CPNE3-208ENST00000614678 ACIN1Q9UKV3 1341 aaKnown RBP8.2□□□□□ -1.1
CPNE3-208ENST00000614678 WASLO00401 505 aaPredicted RBP8.2□□□□□ -1.1
CPNE3-208ENST00000614678 LMOD2Q6P5Q4 547 aa8.2□□□□□ -1.1
CPNE3-208ENST00000614678 ROCK2O75116 1388 aaKnown RBP8.2□□□□□ -1.1
CPNE3-208ENST00000614678 TONSLQ96HA7 1378 aa8.2□□□□□ -1.1
CPNE3-208ENST00000614678 CCER1Q8TC90 406 aaPredicted RBP8.2□□□□□ -1.1
CPNE3-208ENST00000614678 SOS2Q07890 1332 aaPredicted RBP8.19□□□□□ -1.1
CPNE3-208ENST00000614678 PXDNQ92626 1479 aa8.19□□□□□ -1.1
CPNE3-208ENST00000614678 PNPLA6Q8IY17 1366 aa8.19□□□□□ -1.1
CPNE3-208ENST00000614678 PHF23Q9BUL5 403 aaPredicted RBP8.19□□□□□ -1.1
CPNE3-208ENST00000614678 PHF8Q9UPP1 1060 aa8.19□□□□□ -1.1
CPNE3-208ENST00000614678 JCADQ9P266 1359 aa8.18□□□□□ -1.1
CPNE3-208ENST00000614678 C8orf37Q96NL8 207 aa8.18□□□□□ -1.1
CPNE3-208ENST00000614678 NUDT16Q96DE0 195 aaKnown RBP8.18□□□□□ -1.1
CPNE3-208ENST00000614678 DLC1Q96QB1 1528 aa8.18□□□□□ -1.1
CPNE3-208ENST00000614678 KRT28Q7Z3Y7 464 aa8.18□□□□□ -1.1
CPNE3-208ENST00000614678 CARD11Q9BXL7 1154 aa8.18□□□□□ -1.1
CPNE3-208ENST00000614678 TULP4Q9NRJ4 1543 aa8.17□□□□□ -1.1
CPNE3-208ENST00000614678 ATP7BP35670 1465 aa8.17□□□□□ -1.1
CPNE3-208ENST00000614678 SIRT1Q96EB6 747 aa8.17□□□□□ -1.1
CPNE3-208ENST00000614678 CENPJQ9HC77 1338 aaPredicted RBP8.17□□□□□ -1.1
CPNE3-208ENST00000614678 QRICH2Q9H0J4 1663 aa8.17□□□□□ -1.1
CPNE3-208ENST00000614678 SRPK2P78362 688 aaKnown RBP8.17□□□□□ -1.1
CPNE3-208ENST00000614678 LRRC59Q96AG4 307 aaKnown RBP8.17□□□□□ -1.1
CPNE3-208ENST00000614678 PAK3O75914 559 aaPredicted RBP8.16□□□□□ -1.1
CPNE3-208ENST00000614678 KIAA1210Q9ULL0 1709 aa8.16□□□□□ -1.1
CPNE3-208ENST00000614678 ST20-MTHFSA0A0A6YYL1 179 aa8.16□□□□□ -1.1
CPNE3-208ENST00000614678 CABP1Q9NZU7 370 aa8.16□□□□□ -1.1
CPNE3-208ENST00000614678 PSME1Q06323 249 aa8.15□□□□□ -1.1
CPNE3-208ENST00000614678 MEX3CQ5U5Q3 659 aaKnown RBP8.15□□□□□ -1.1
CPNE3-208ENST00000614678 SHPRHQ149N8 1683 aa8.15□□□□□ -1.1
CPNE3-208ENST00000614678 ADGRB2O60241 1585 aa8.15□□□□□ -1.1
CPNE3-208ENST00000614678 ACEP12821 1306 aa8.15□□□□□ -1.11
CPNE3-208ENST00000614678 ZRANB1Q9UGI0 708 aa8.15□□□□□ -1.11
CPNE3-208ENST00000614678 SPATA31A3Q5VYP0 1347 aa8.15□□□□□ -1.11
CPNE3-208ENST00000614678 NPHP3Q7Z494 1330 aa8.15□□□□□ -1.11
CPNE3-208ENST00000614678 AFF2P51816 1311 aa8.14□□□□□ -1.11
CPNE3-208ENST00000614678 NGDNQ8NEJ9 315 aaKnown RBP8.14□□□□□ -1.11
CPNE3-208ENST00000614678 FBLN1P23142 703 aa8.13□□□□□ -1.11
CPNE3-208ENST00000614678 TESK2Q96S53 571 aa8.13□□□□□ -1.11
CPNE3-208ENST00000614678 SOX12O15370 315 aa8.13□□□□□ -1.11
CPNE3-208ENST00000614678 SLC12A5Q9H2X9 1139 aa8.13□□□□□ -1.11
CPNE3-208ENST00000614678 PPIP5K1Q6PFW1 1433 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 NGLY1Q96IV0 654 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 STAC3Q96MF2 364 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 TRPM3Q9HCF6 1732 aaPredicted RBP8.12□□□□□ -1.11
CPNE3-208ENST00000614678 GPRASP1Q5JY77 1395 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 RALGAPBQ86X10 1494 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 CHRNA2Q15822 529 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 UTRNP46939 3433 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 SPATA31A6Q5VVP1 1343 aa8.12□□□□□ -1.11
CPNE3-208ENST00000614678 FAM83GA6ND36 823 aa8.11□□□□□ -1.11
CPNE3-208ENST00000614678 CCDC61Q9Y6R9 512 aa8.11□□□□□ -1.11
CPNE3-208ENST00000614678 ZC3H6P61129 1189 aaKnown RBP8.11□□□□□ -1.11
CPNE3-208ENST00000614678 TOPAZ1Q8N9V7 1692 aa8.11□□□□□ -1.11
CPNE3-208ENST00000614678 TNS3Q68CZ2 1445 aa8.11□□□□□ -1.11
CPNE3-208ENST00000614678 ANKARQ7Z5J8 1434 aa8.1□□□□□ -1.11
CPNE3-208ENST00000614678 C11orf95C9JLR9 678 aaPredicted RBP8.1□□□□□ -1.11
CPNE3-208ENST00000614678 TMC1Q8TDI8 760 aa8.1□□□□□ -1.11
CPNE3-208ENST00000614678 BCL9LQ86UU0 1499 aa8.1□□□□□ -1.11
CPNE3-208ENST00000614678 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.1□□□□□ -1.11
CPNE3-208ENST00000614678 QTRT2Q9H974 415 aaKnown RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms