RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 EP400Q96L91 3159 aa16.4■□□□□ 0.22
SLIRP-212ENST00000613856 SETBP1Q9Y6X0 1596 aa16.39■□□□□ 0.21
SLIRP-212ENST00000613856 PPLO60437 1756 aa16.39■□□□□ 0.21
SLIRP-212ENST00000613856 ADAMTS2O95450 1211 aa16.38■□□□□ 0.21
SLIRP-212ENST00000613856 RBM6P78332 1123 aaKnown RBP16.38■□□□□ 0.21
SLIRP-212ENST00000613856 MYOM2P54296 1465 aa16.36■□□□□ 0.21
SLIRP-212ENST00000613856 ADGRL3Q9HAR2 1447 aa16.36■□□□□ 0.21
SLIRP-212ENST00000613856 LRRC59Q96AG4 307 aaKnown RBP16.35■□□□□ 0.21
SLIRP-212ENST00000613856 STAC3Q96MF2 364 aa16.34■□□□□ 0.21
SLIRP-212ENST00000613856 PRAG1Q86YV5 1406 aa16.34■□□□□ 0.21
SLIRP-212ENST00000613856 NEXMIFQ5QGS0 1516 aa16.34■□□□□ 0.21
SLIRP-212ENST00000613856 LAMC1P11047 1609 aa16.34■□□□□ 0.21
SLIRP-212ENST00000613856 TRPM1Q7Z4N2 1603 aa16.34■□□□□ 0.21
SLIRP-212ENST00000613856 NGLY1Q96IV0 654 aa16.33■□□□□ 0.2
SLIRP-212ENST00000613856 KIAA1210Q9ULL0 1709 aa16.33■□□□□ 0.2
SLIRP-212ENST00000613856 C1orf167Q5SNV9 1468 aa16.32■□□□□ 0.2
SLIRP-212ENST00000613856 RALGAPBQ86X10 1494 aa16.32■□□□□ 0.2
SLIRP-212ENST00000613856 NRXN1Q9ULB1 1477 aa16.32■□□□□ 0.2
SLIRP-212ENST00000613856 RPGRIP1LQ68CZ1 1315 aa16.31■□□□□ 0.2
SLIRP-212ENST00000613856 ATAD2Q6PL18 1390 aa16.3■□□□□ 0.2
SLIRP-212ENST00000613856 RGL3Q3MIN7 710 aa16.3■□□□□ 0.2
SLIRP-212ENST00000613856 DCAF11Q8TEB1 546 aa16.3■□□□□ 0.2
SLIRP-212ENST00000613856 ORAI2Q96SN7 254 aa16.3■□□□□ 0.2
SLIRP-212ENST00000613856 USP21Q9UK80 565 aa16.29■□□□□ 0.2
SLIRP-212ENST00000613856 NBPF8Q3BBV2 869 aa16.28■□□□□ 0.2
SLIRP-212ENST00000613856 ATRNO75882 1429 aa16.28■□□□□ 0.2
SLIRP-212ENST00000613856 COL22A1Q8NFW1 1626 aaPredicted RBP16.27■□□□□ 0.2
SLIRP-212ENST00000613856 SOS2Q07890 1332 aaPredicted RBP16.27■□□□□ 0.2
SLIRP-212ENST00000613856 ZNF326Q5BKZ1 582 aaKnown RBP16.27■□□□□ 0.2
SLIRP-212ENST00000613856 MARF1Q9Y4F3 1742 aaKnown RBP16.27■□□□□ 0.19
SLIRP-212ENST00000613856 ROBO2Q9HCK4 1378 aa16.26■□□□□ 0.19
SLIRP-212ENST00000613856 FNBP4Q8N3X1 1017 aaPredicted RBP16.24■□□□□ 0.19
SLIRP-212ENST00000613856 TRPC5Q9UL62 973 aaPredicted RBP16.24■□□□□ 0.19
SLIRP-212ENST00000613856 KDM2AQ9Y2K7 1162 aa16.24■□□□□ 0.19
SLIRP-212ENST00000613856 PIK3C2GO75747 1445 aa16.24■□□□□ 0.19
SLIRP-212ENST00000613856 GPRASP1Q5JY77 1395 aa16.24■□□□□ 0.19
SLIRP-212ENST00000613856 BCL9LQ86UU0 1499 aa16.23■□□□□ 0.19
SLIRP-212ENST00000613856 BRWD3Q6RI45 1802 aa16.23■□□□□ 0.19
SLIRP-212ENST00000613856 PTCH1Q13635 1447 aa16.22■□□□□ 0.19
SLIRP-212ENST00000613856 ZRANB1Q9UGI0 708 aa16.22■□□□□ 0.19
SLIRP-212ENST00000613856 XPCQ01831 940 aaPredicted RBP16.21■□□□□ 0.19
SLIRP-212ENST00000613856 GLI3P10071 1580 aa16.21■□□□□ 0.18
SLIRP-212ENST00000613856 ADGRF5Q8IZF2 1346 aa16.19■□□□□ 0.18
SLIRP-212ENST00000613856 PXDNQ92626 1479 aa16.19■□□□□ 0.18
SLIRP-212ENST00000613856 VGFO15240 615 aaPredicted RBP16.19■□□□□ 0.18
SLIRP-212ENST00000613856 ROCK2O75116 1388 aaKnown RBP16.18■□□□□ 0.18
SLIRP-212ENST00000613856 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.17■□□□□ 0.18
SLIRP-212ENST00000613856 DEFB132Q7Z7B7 95 aa16.16■□□□□ 0.18
SLIRP-212ENST00000613856 ADGRB1O14514 1584 aa16.16■□□□□ 0.18
SLIRP-212ENST00000613856 CDC42BPGQ6DT37 1551 aa16.14■□□□□ 0.17
SLIRP-212ENST00000613856 GJD4Q96KN9 370 aaPredicted RBP16.14■□□□□ 0.17
SLIRP-212ENST00000613856 USP47Q96K76 1375 aa16.13■□□□□ 0.17
SLIRP-212ENST00000613856 NUTM2FA1L443 756 aa16.13■□□□□ 0.17
SLIRP-212ENST00000613856 ZNF316A6NFI3 1004 aaPredicted RBP16.13■□□□□ 0.17
SLIRP-212ENST00000613856 FOXO3O43524 673 aa16.13■□□□□ 0.17
SLIRP-212ENST00000613856 EIF4G2P78344 907 aaKnown RBP eCLIP16.12■□□□□ 0.17
SLIRP-212ENST00000613856 ESCO1Q5FWF5 840 aa16.12■□□□□ 0.17
SLIRP-212ENST00000613856 CARD11Q9BXL7 1154 aa16.12■□□□□ 0.17
SLIRP-212ENST00000613856 C14orf93Q9H972 538 aaKnown RBP16.12■□□□□ 0.17
SLIRP-212ENST00000613856 NBPF1Q3BBV0 1214 aa16.11■□□□□ 0.17
SLIRP-212ENST00000613856 BLMP54132 1417 aaPredicted RBP16.11■□□□□ 0.17
SLIRP-212ENST00000613856 SLIT2O94813 1529 aa16.1■□□□□ 0.17
SLIRP-212ENST00000613856 LRP5O75197 1615 aa16.1■□□□□ 0.17
SLIRP-212ENST00000613856 USP32Q8NFA0 1604 aa16.1■□□□□ 0.17
SLIRP-212ENST00000613856 RGPD8O14715 1765 aaPredicted RBP16.1■□□□□ 0.17
SLIRP-212ENST00000613856 PLCH1Q4KWH8 1693 aa16.09■□□□□ 0.17
SLIRP-212ENST00000613856 HSPA5P11021 654 aaKnown RBP16.09■□□□□ 0.17
SLIRP-212ENST00000613856 CFAP70Q5T0N1 1121 aa16.09■□□□□ 0.17
SLIRP-212ENST00000613856 CCDC125Q86Z20 511 aa16.09■□□□□ 0.17
SLIRP-212ENST00000613856 NPHP3Q7Z494 1330 aa16.09■□□□□ 0.17
SLIRP-212ENST00000613856 ARHGEF28Q8N1W1 1705 aaKnown RBP16.08■□□□□ 0.17
SLIRP-212ENST00000613856 PLEKHH1Q9ULM0 1364 aa16.08■□□□□ 0.16
SLIRP-212ENST00000613856 KNDC1Q76NI1 1749 aa16.08■□□□□ 0.16
SLIRP-212ENST00000613856 ABCA3Q99758 1704 aa16.08■□□□□ 0.16
SLIRP-212ENST00000613856 PLEKHG5O94827 1062 aa16.07■□□□□ 0.16
SLIRP-212ENST00000613856 WAPLQ7Z5K2 1190 aa16.07■□□□□ 0.16
SLIRP-212ENST00000613856 FMN2Q9NZ56 1722 aa16.07■□□□□ 0.16
SLIRP-212ENST00000613856 EIF3AQ14152 1382 aaKnown RBP16.06■□□□□ 0.16
SLIRP-212ENST00000613856 UNC5CLQ8IV45 518 aa16.06■□□□□ 0.16
SLIRP-212ENST00000613856 PSDA5PKW4 1024 aaPredicted RBP16.05■□□□□ 0.16
SLIRP-212ENST00000613856 DLC1Q96QB1 1528 aa16.04■□□□□ 0.16
SLIRP-212ENST00000613856 SEPT12Q8IYM1 358 aa16.04■□□□□ 0.16
SLIRP-212ENST00000613856 CABLES1Q8TDN4 633 aa16.04■□□□□ 0.16
SLIRP-212ENST00000613856 SPATA31A3Q5VYP0 1347 aa16.03■□□□□ 0.16
SLIRP-212ENST00000613856 STK26Q9P289 416 aa16.03■□□□□ 0.16
SLIRP-212ENST00000613856 QRICH2Q9H0J4 1663 aa16.02■□□□□ 0.16
SLIRP-212ENST00000613856 YTHDC2Q9H6S0 1430 aaKnown RBP16.02■□□□□ 0.15
SLIRP-212ENST00000613856 SBNO2Q9Y2G9 1366 aa16.01■□□□□ 0.15
SLIRP-212ENST00000613856 NWD2Q9ULI1 1742 aa16.01■□□□□ 0.15
SLIRP-212ENST00000613856 KIF1AQ12756 1690 aa16.01■□□□□ 0.15
SLIRP-212ENST00000613856 LRPPRCP42704 1394 aaKnown RBP16■□□□□ 0.15
SLIRP-212ENST00000613856 NRAPQ86VF7 1730 aa16■□□□□ 0.15
SLIRP-212ENST00000613856 TMEM132EQ6IEE7 984 aa16■□□□□ 0.15
SLIRP-212ENST00000613856 TECPR2O15040 1411 aa16■□□□□ 0.15
SLIRP-212ENST00000613856 ST20-MTHFSA0A0A6YYL1 179 aa15.99■□□□□ 0.15
SLIRP-212ENST00000613856 HIRIP3Q9BW71 556 aaPredicted RBP15.98■□□□□ 0.15
SLIRP-212ENST00000613856 VPS72Q15906 364 aa15.97■□□□□ 0.15
SLIRP-212ENST00000613856 FAM182BQ5T319 152 aa15.97■□□□□ 0.15
SLIRP-212ENST00000613856 KRT28Q7Z3Y7 464 aa15.97■□□□□ 0.15
SLIRP-212ENST00000613856 ABCC11Q96J66 1382 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms