RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 NAT10Q9H0A0 1025 aaKnown RBP5.95□□□□□ -1.46
VPS13D-213ENST00000613099 MYO6Q9UM54 1294 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 GTF2F1P35269 517 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS13D-213ENST00000613099 EXOC6Q8TAG9 804 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 C22orf23Q9BZE7 217 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 ANKRD30BQ9BXX2 1392 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 POLR1AO95602 1720 aaPredicted RBP5.95□□□□□ -1.46
VPS13D-213ENST00000613099 CNPY4Q8N129 248 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 BECN2A8MW95 431 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 ATP6V1AP38606 617 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 FMNL3Q8IVF7 1028 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 MIPOL1Q8TD10 442 aa5.95□□□□□ -1.46
VPS13D-213ENST00000613099 TMCO3Q6UWJ1 677 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 STK31Q9BXU1 1019 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 CUX2O14529 1486 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 DAPK1P53355 1430 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 KIF18AQ8NI77 898 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 ARID4AP29374 1257 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-213ENST00000613099 CGNL1Q0VF96 1302 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 EIF3AQ14152 1382 aaKnown RBP5.94□□□□□ -1.46
VPS13D-213ENST00000613099 TSR1Q2NL82 804 aaKnown RBP5.94□□□□□ -1.46
VPS13D-213ENST00000613099 SMC4Q9NTJ3 1288 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 ARID3CA6NKF2 412 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 MICALCLQ6ZW33 695 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 P3H3Q8IVL6 736 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 RRAGDQ9NQL2 400 aaPredicted RBP5.94□□□□□ -1.46
VPS13D-213ENST00000613099 KIF1CO43896 1103 aaKnown RBP5.94□□□□□ -1.46
VPS13D-213ENST00000613099 GOLGA6L10A0A0M3HER8 536 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 CFAP53Q96M91 514 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 SPDYE4A6NLX3 237 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 NINLQ9Y2I6 1382 aa5.94□□□□□ -1.46
VPS13D-213ENST00000613099 FILIP1Q7Z7B0 1213 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 CUL7Q14999 1698 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 REC8O95072 547 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 SWAP70Q9UH65 585 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 TUBB4AP04350 444 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 MAP2K2P36507 400 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 MCTP1Q6DN14 999 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 CAGE1Q8TC20 777 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 SRPK2P78362 688 aaKnown RBP5.93□□□□□ -1.46
VPS13D-213ENST00000613099 XPCQ01831 940 aaPredicted RBP5.93□□□□□ -1.46
VPS13D-213ENST00000613099 RUFY1Q96T51 708 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 ADGBQ8N7X0 1667 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 UBXN4Q92575 508 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 MRC2Q9UBG0 1479 aa5.93□□□□□ -1.46
VPS13D-213ENST00000613099 NEMFO60524 1076 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 SECISBP2LQ93073 1101 aaKnown RBP5.92□□□□□ -1.46
VPS13D-213ENST00000613099 TRERF1Q96PN7 1200 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 RBBP5Q15291 538 aaKnown RBP5.92□□□□□ -1.46
VPS13D-213ENST00000613099 TNNT1P13805 278 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 PPM1EQ8WY54 764 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 BRMS1Q9HCU9 246 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 TERF2IPQ9NYB0 399 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 A0A1B0GUA9 196 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 TOMM22Q9NS69 142 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 TICAM2Q86XR7 235 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 SIN3AQ96ST3 1273 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 NOL7Q9UMY1 257 aaKnown RBP5.92□□□□□ -1.46
VPS13D-213ENST00000613099 CCDC196A0A1B0GTZ2 297 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 GOLGA2Q08379 1002 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 RSPH14Q9UHP6 348 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 CRBNQ96SW2 442 aa5.92□□□□□ -1.46
VPS13D-213ENST00000613099 CCDC50Q8IVM0 306 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 ZNF853P0CG23 659 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 GBP3Q9H0R5 595 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 POTEB2H3BUK9 544 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 SEPT14Q6ZU15 432 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 TRIM5Q9C035 493 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 SUPT6HQ7KZ85 1726 aaKnown RBP5.91□□□□□ -1.46
VPS13D-213ENST00000613099 TUBB4BP68371 445 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 KDM2AQ9Y2K7 1162 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 KANK1Q14678 1352 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 EZRP15311 586 aaKnown RBP5.91□□□□□ -1.46
VPS13D-213ENST00000613099 GOLGA6L9A6NEM1 432 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 TSPY4P0CV99 314 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 TSPY10P0CW01 314 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 RNF214Q8ND24 703 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 NLRP13Q86W25 1043 aa5.91□□□□□ -1.46
VPS13D-213ENST00000613099 FAM135AQ9P2D6 1515 aa5.9□□□□□ -1.46
VPS13D-213ENST00000613099 CT47B1P0C2W7 299 aaPredicted RBP5.9□□□□□ -1.46
VPS13D-213ENST00000613099 ENOX2Q16206 610 aaKnown RBP5.9□□□□□ -1.46
VPS13D-213ENST00000613099 FOXD4L1Q9NU39 408 aa5.9□□□□□ -1.46
VPS13D-213ENST00000613099 CCDC192P0DO97 292 aa5.9□□□□□ -1.46
VPS13D-213ENST00000613099 GEMIN8Q9NWZ8 242 aaKnown RBP5.9□□□□□ -1.46
VPS13D-213ENST00000613099 CHMP3Q9Y3E7 222 aa5.9□□□□□ -1.46
VPS13D-213ENST00000613099 UVSSAQ2YD98 709 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 NUTM1Q86Y26 1132 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 MCM3P25205 808 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 RPAINQ86UA6 219 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 GBP2P32456 591 aaPredicted RBP5.9□□□□□ -1.47
VPS13D-213ENST00000613099 TRDNQ13061 729 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 MYRIPQ8NFW9 859 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 ROCK1Q13464 1354 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 SHTN1A0MZ66 631 aa5.9□□□□□ -1.47
VPS13D-213ENST00000613099 CCDC7Q96M83 1385 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 MCM2P49736 904 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 ERCC3P19447 782 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 PRPF40AO75400 957 aaKnown RBP5.89□□□□□ -1.47
VPS13D-213ENST00000613099 GBP6Q6ZN66 633 aa5.89□□□□□ -1.47
VPS13D-213ENST00000613099 SMG6Q86US8 1419 aaKnown RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms