RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 UBXN4Q92575 508 aa10.47□□□□□ -0.73
TTC28-208ENST00000612946 WDR33Q9C0J8 1336 aaKnown RBP10.47□□□□□ -0.73
TTC28-208ENST00000612946 GOLGA6L9A6NEM1 432 aa10.47□□□□□ -0.73
TTC28-208ENST00000612946 AEBP1Q8IUX7 1158 aa10.47□□□□□ -0.73
TTC28-208ENST00000612946 DACH1Q9UI36 760 aa10.47□□□□□ -0.73
TTC28-208ENST00000612946 TRIM29Q14134 588 aa10.46□□□□□ -0.73
TTC28-208ENST00000612946 CRBNQ96SW2 442 aa10.46□□□□□ -0.73
TTC28-208ENST00000612946 MCM4P33991 863 aa10.46□□□□□ -0.73
TTC28-208ENST00000612946 SH3BGRP55822 239 aaPredicted RBP10.46□□□□□ -0.73
TTC28-208ENST00000612946 FEZ1Q99689 392 aa10.46□□□□□ -0.74
TTC28-208ENST00000612946 SWAP70Q9UH65 585 aa10.46□□□□□ -0.74
TTC28-208ENST00000612946 WASHC2AQ641Q2 1341 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 WASHC2CQ9Y4E1 1318 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 KIF3BO15066 747 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 NF2P35240 595 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 JAKMIP3Q5VZ66 844 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 CCDC146Q8IYE0 955 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 EXOC6Q8TAG9 804 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 KIF21BO75037 1637 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 FAM193AP78312 1265 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 JMYQ8N9B5 988 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 CPSF2Q9P2I0 782 aaKnown RBP10.45□□□□□ -0.74
TTC28-208ENST00000612946 CLUAP1Q96AJ1 413 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 PSMA5P28066 241 aa10.45□□□□□ -0.74
TTC28-208ENST00000612946 ZNF396Q96N95 335 aaPredicted RBP10.45□□□□□ -0.74
TTC28-208ENST00000612946 HDGFL2Q7Z4V5 671 aaPredicted RBP10.45□□□□□ -0.74
TTC28-208ENST00000612946 RBM33Q96EV2 1170 aaKnown RBP10.45□□□□□ -0.74
TTC28-208ENST00000612946 FILIP1LQ4L180 1135 aa10.44□□□□□ -0.74
TTC28-208ENST00000612946 USP47Q96K76 1375 aa10.44□□□□□ -0.74
TTC28-208ENST00000612946 ZSCAN12O43309 604 aa10.44□□□□□ -0.74
TTC28-208ENST00000612946 AKAP17AQ02040 695 aaKnown RBP10.44□□□□□ -0.74
TTC28-208ENST00000612946 DCAF11Q8TEB1 546 aa10.44□□□□□ -0.74
TTC28-208ENST00000612946 POLA1P09884 1462 aaPredicted RBP10.44□□□□□ -0.74
TTC28-208ENST00000612946 BMS1Q14692 1282 aaKnown RBP10.44□□□□□ -0.74
TTC28-208ENST00000612946 HOMEZQ8IX15 550 aa10.44□□□□□ -0.74
TTC28-208ENST00000612946 ZNHIT6Q9NWK9 470 aaKnown RBP10.44□□□□□ -0.74
TTC28-208ENST00000612946 U2AF1L5P0DN76 240 aaPredicted RBP10.44□□□□□ -0.74
TTC28-208ENST00000612946 LIG1P18858 919 aa10.44□□□□□ -0.74
TTC28-208ENST00000612946 U2AF1Q01081 240 aaKnown RBP eCLIP10.44□□□□□ -0.74
TTC28-208ENST00000612946 FOXD4L1Q9NU39 408 aa10.43□□□□□ -0.74
TTC28-208ENST00000612946 WDR66Q8TBY9 1149 aa10.43□□□□□ -0.74
TTC28-208ENST00000612946 NOL10Q9BSC4 688 aaKnown RBP10.43□□□□□ -0.74
TTC28-208ENST00000612946 CRACR2AQ9BSW2 395 aa10.43□□□□□ -0.74
TTC28-208ENST00000612946 PDE3AQ14432 1141 aa10.43□□□□□ -0.74
TTC28-208ENST00000612946 POGKQ9P215 609 aa10.43□□□□□ -0.74
TTC28-208ENST00000612946 API5Q9BZZ5 524 aaKnown RBP10.43□□□□□ -0.74
TTC28-208ENST00000612946 TUBBP07437 444 aa10.43□□□□□ -0.74
TTC28-208ENST00000612946 ERICH4A6NGS2 130 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 CT47A1Q5JQC4 288 aaPredicted RBP10.42□□□□□ -0.74
TTC28-208ENST00000612946 SAFBQ15424 915 aaKnown RBP eCLIP10.42□□□□□ -0.74
TTC28-208ENST00000612946 HSP90AB4PQ58FF6 505 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.42□□□□□ -0.74
TTC28-208ENST00000612946 SLC4A3P48751 1232 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 RSPH4AQ5TD94 716 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 NPHP1O15259 732 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 DZIP1LQ8IYY4 767 aaKnown RBP10.42□□□□□ -0.74
TTC28-208ENST00000612946 HIP1O00291 1037 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 SYNE3Q6ZMZ3 975 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.42□□□□□ -0.74
TTC28-208ENST00000612946 ATAD2Q6PL18 1390 aa10.42□□□□□ -0.74
TTC28-208ENST00000612946 A6NNZ2 444 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 GSDMDP57764 484 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 TUBB8Q3ZCM7 444 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 DNAAF4Q8WXU2 420 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 TERF2IPQ9NYB0 399 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 ANKRD45Q5TZF3 282 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 CCDC83Q8IWF9 413 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 ERC2O15083 957 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 DHX16O60231 1041 aaKnown RBP10.41□□□□□ -0.74
TTC28-208ENST00000612946 TDO2P48775 406 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 CCDC7Q96M83 1385 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 TMCO5BA8MYB1 307 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 CEP57L1Q8IYX8 460 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 ANKRD1Q15327 319 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 GIGYF2Q6Y7W6 1299 aaKnown RBP10.41□□□□□ -0.74
TTC28-208ENST00000612946 UVSSAQ2YD98 709 aa10.41□□□□□ -0.74
TTC28-208ENST00000612946 SMC2O95347 1197 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 PCMTD1Q96MG8 357 aaPredicted RBP10.4□□□□□ -0.74
TTC28-208ENST00000612946 TOP2AP11388 1531 aaKnown RBP10.4□□□□□ -0.74
TTC28-208ENST00000612946 TXLNAP40222 546 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 MNAT1P51948 309 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 CLASRPQ8N2M8 674 aaKnown RBP10.4□□□□□ -0.74
TTC28-208ENST00000612946 SRRTQ9BXP5 876 aaKnown RBP10.4□□□□□ -0.74
TTC28-208ENST00000612946 GABPB1Q06547 395 aaPredicted RBP10.4□□□□□ -0.74
TTC28-208ENST00000612946 CPLX1O14810 134 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 PTPN14Q15678 1187 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 K7ELQ4 463 aaPredicted RBP10.4□□□□□ -0.74
TTC28-208ENST00000612946 PPP4R3BQ5MIZ7 849 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 CHMP3Q9Y3E7 222 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 CCDC171Q6TFL3 1326 aa10.4□□□□□ -0.74
TTC28-208ENST00000612946 RBM25P49756 843 aaKnown RBP10.4□□□□□ -0.75
TTC28-208ENST00000612946 CCDC148Q8NFR7 591 aa10.4□□□□□ -0.75
TTC28-208ENST00000612946 RGL3Q3MIN7 710 aa10.39□□□□□ -0.75
TTC28-208ENST00000612946 HDGFP51858 240 aaKnown RBP10.39□□□□□ -0.75
TTC28-208ENST00000612946 SDF4Q9BRK5 362 aa10.39□□□□□ -0.75
TTC28-208ENST00000612946 PPFIBP1Q86W92 1011 aa10.39□□□□□ -0.75
TTC28-208ENST00000612946 A0A1B0GUA9 196 aa10.39□□□□□ -0.75
TTC28-208ENST00000612946 MIPOL1Q8TD10 442 aa10.39□□□□□ -0.75
TTC28-208ENST00000612946 STAC3Q96MF2 364 aa10.39□□□□□ -0.75
TTC28-208ENST00000612946 SMTNL1A8MU46 457 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms