RNA–Protein interactions for RNA: ENST00000611833.4

NEK3-206, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-206ENST00000611833 MORC1Q86VD1 984 aa22.52■■□□□ 1.2
NEK3-206ENST00000611833 SHPRHQ149N8 1683 aa22.51■■□□□ 1.19
NEK3-206ENST00000611833 USP32Q8NFA0 1604 aa22.51■■□□□ 1.19
NEK3-206ENST00000611833 TULP4Q9NRJ4 1543 aa22.51■■□□□ 1.19
NEK3-206ENST00000611833 NGEFQ8N5V2 710 aa22.49■■□□□ 1.19
NEK3-206ENST00000611833 E9PSI1 815 aa22.49■■□□□ 1.19
NEK3-206ENST00000611833 TNNT2P45379 298 aaPredicted RBP22.49■■□□□ 1.19
NEK3-206ENST00000611833 NKTRP30414 1462 aaKnown RBP22.49■■□□□ 1.19
NEK3-206ENST00000611833 DMRT2Q9Y5R5 561 aa22.48■■□□□ 1.19
NEK3-206ENST00000611833 MYO5BQ9ULV0 1848 aa22.48■■□□□ 1.19
NEK3-206ENST00000611833 EVC2Q86UK5 1308 aa22.47■■□□□ 1.19
NEK3-206ENST00000611833 SLC52A1Q9NWF4 448 aa22.47■■□□□ 1.19
NEK3-206ENST00000611833 NBR1Q14596 966 aa22.47■■□□□ 1.19
NEK3-206ENST00000611833 CENPQQ7L2Z9 268 aaPredicted RBP22.47■■□□□ 1.19
NEK3-206ENST00000611833 PREX1Q8TCU6 1659 aa22.47■■□□□ 1.19
NEK3-206ENST00000611833 ZFYVE9O95405 1425 aa22.46■■□□□ 1.19
NEK3-206ENST00000611833 SKAP1Q86WV1 359 aa22.46■■□□□ 1.19
NEK3-206ENST00000611833 PUS7Q96PZ0 661 aaKnown RBP22.46■■□□□ 1.19
NEK3-206ENST00000611833 KDM2BQ8NHM5 1336 aa22.46■■□□□ 1.19
NEK3-206ENST00000611833 CGNL1Q0VF96 1302 aa22.45■■□□□ 1.18
NEK3-206ENST00000611833 TMEM131LA2VDJ0 1609 aa22.44■■□□□ 1.18
NEK3-206ENST00000611833 ANKRD36BQ8N2N9 1353 aa22.44■■□□□ 1.18
NEK3-206ENST00000611833 CYB5RLQ6IPT4 315 aa22.43■■□□□ 1.18
NEK3-206ENST00000611833 SENP3Q9H4L4 574 aaPredicted RBP22.42■■□□□ 1.18
NEK3-206ENST00000611833 CABP2Q9NPB3 220 aa22.42■■□□□ 1.18
NEK3-206ENST00000611833 SAFB2Q14151 953 aaKnown RBP eCLIP22.42■■□□□ 1.18
NEK3-206ENST00000611833 WWC1Q8IX03 1113 aa22.42■■□□□ 1.18
NEK3-206ENST00000611833 BCAR3O75815 825 aa22.41■■□□□ 1.18
NEK3-206ENST00000611833 MTHFSP49914 203 aa22.41■■□□□ 1.18
NEK3-206ENST00000611833 STK26Q9P289 416 aa22.4■■□□□ 1.18
NEK3-206ENST00000611833 IQSEC2Q5JU85 1478 aa22.38■■□□□ 1.17
NEK3-206ENST00000611833 RUNDC1Q96C34 613 aa22.38■■□□□ 1.17
NEK3-206ENST00000611833 NSD2O96028 1365 aa22.37■■□□□ 1.17
NEK3-206ENST00000611833 NEUROD2Q15784 382 aa22.37■■□□□ 1.17
NEK3-206ENST00000611833 FBXO31Q5XUX0 539 aaPredicted RBP22.37■■□□□ 1.17
NEK3-206ENST00000611833 PTPRMP28827 1452 aa22.36■■□□□ 1.17
NEK3-206ENST00000611833 CFAP53Q96M91 514 aa22.36■■□□□ 1.17
NEK3-206ENST00000611833 TCP11L2Q8N4U5 519 aa22.35■■□□□ 1.17
NEK3-206ENST00000611833 RRP7AQ9Y3A4 280 aaKnown RBP22.35■■□□□ 1.17
NEK3-206ENST00000611833 A0A1W2PP64 1363 aa22.34■■□□□ 1.17
NEK3-206ENST00000611833 FAM69CQ0P6D2 419 aa22.34■■□□□ 1.17
NEK3-206ENST00000611833 CANXP27824 592 aaKnown RBP22.34■■□□□ 1.17
NEK3-206ENST00000611833 DIP2BQ9P265 1576 aa22.33■■□□□ 1.17
NEK3-206ENST00000611833 SRPK2P78362 688 aaKnown RBP22.33■■□□□ 1.17
NEK3-206ENST00000611833 PHF23Q9BUL5 403 aaPredicted RBP22.33■■□□□ 1.17
NEK3-206ENST00000611833 ABCC11Q96J66 1382 aa22.32■■□□□ 1.16
NEK3-206ENST00000611833 YTHDC2Q9H6S0 1430 aaKnown RBP22.32■■□□□ 1.16
NEK3-206ENST00000611833 RTL5Q5HYW3 569 aaPredicted RBP22.32■■□□□ 1.16
NEK3-206ENST00000611833 NINLQ9Y2I6 1382 aa22.32■■□□□ 1.16
NEK3-206ENST00000611833 DEKP35659 375 aaKnown RBP22.31■■□□□ 1.16
NEK3-206ENST00000611833 PRAM1Q96QH2 718 aa22.31■■□□□ 1.16
NEK3-206ENST00000611833 PDE3AQ14432 1141 aa22.3■■□□□ 1.16
NEK3-206ENST00000611833 MINK1Q8N4C8 1332 aaPredicted RBP22.3■■□□□ 1.16
NEK3-206ENST00000611833 DDRGK1Q96HY6 314 aa22.3■■□□□ 1.16
NEK3-206ENST00000611833 TSPOAP1O95153 1857 aa22.3■■□□□ 1.16
NEK3-206ENST00000611833 RIMBP3CA6NJZ7 1639 aa22.29■■□□□ 1.16
NEK3-206ENST00000611833 RIMBP3BA6NNM3 1639 aa22.29■■□□□ 1.16
NEK3-206ENST00000611833 RIMBP3Q9UFD9 1639 aa22.29■■□□□ 1.16
NEK3-206ENST00000611833 ALKQ9UM73 1620 aa22.29■■□□□ 1.16
NEK3-206ENST00000611833 CLTCQ00610 1675 aaKnown RBP22.29■■□□□ 1.16
NEK3-206ENST00000611833 FAM161AQ3B820 660 aa22.29■■□□□ 1.16
NEK3-206ENST00000611833 RGS3P49796 1198 aa22.28■■□□□ 1.16
NEK3-206ENST00000611833 ATAD2Q6PL18 1390 aa22.28■■□□□ 1.16
NEK3-206ENST00000611833 WDR63Q8IWG1 891 aa22.27■■□□□ 1.16
NEK3-206ENST00000611833 POGKQ9P215 609 aa22.27■■□□□ 1.16
NEK3-206ENST00000611833 CD163L1Q9NR16 1453 aa22.27■■□□□ 1.16
NEK3-206ENST00000611833 CCDC27Q2M243 656 aa22.26■■□□□ 1.15
NEK3-206ENST00000611833 REREQ9P2R6 1566 aa22.26■■□□□ 1.15
NEK3-206ENST00000611833 U2AF1L5P0DN76 240 aaPredicted RBP22.26■■□□□ 1.15
NEK3-206ENST00000611833 U2AF1Q01081 240 aaKnown RBP eCLIP22.26■■□□□ 1.15
NEK3-206ENST00000611833 FRAT1Q92837 279 aaPredicted RBP22.26■■□□□ 1.15
NEK3-206ENST00000611833 BCL11AQ9H165 835 aa22.26■■□□□ 1.15
NEK3-206ENST00000611833 GGNBP2Q9H3C7 697 aa22.26■■□□□ 1.15
NEK3-206ENST00000611833 PANK1Q8TE04 598 aa22.25■■□□□ 1.15
NEK3-206ENST00000611833 AGLP35573 1532 aa22.25■■□□□ 1.15
NEK3-206ENST00000611833 STAG3Q9UJ98 1225 aa22.24■■□□□ 1.15
NEK3-206ENST00000611833 COG6Q9Y2V7 657 aa22.24■■□□□ 1.15
NEK3-206ENST00000611833 ADGRB2O60241 1585 aa22.24■■□□□ 1.15
NEK3-206ENST00000611833 TERF2IPQ9NYB0 399 aa22.23■■□□□ 1.15
NEK3-206ENST00000611833 LAS1LQ9Y4W2 734 aaKnown RBP22.23■■□□□ 1.15
NEK3-206ENST00000611833 ANKRD26Q9UPS8 1709 aa22.23■■□□□ 1.15
NEK3-206ENST00000611833 NLRP1Q9C000 1473 aa22.23■■□□□ 1.15
NEK3-206ENST00000611833 FYB1O15117 783 aa22.23■■□□□ 1.15
NEK3-206ENST00000611833 RARSP54136 660 aaKnown RBP22.23■■□□□ 1.15
NEK3-206ENST00000611833 C8orf34Q49A92 452 aa22.23■■□□□ 1.15
NEK3-206ENST00000611833 CLUAP1Q96AJ1 413 aa22.23■■□□□ 1.15
NEK3-206ENST00000611833 IGHDP01880 384 aa22.22■■□□□ 1.15
NEK3-206ENST00000611833 ARHGEF40Q8TER5 1519 aa22.21■■□□□ 1.15
NEK3-206ENST00000611833 NCBP3Q53F19 620 aaKnown RBP22.21■■□□□ 1.15
NEK3-206ENST00000611833 COL3A1P02461 1466 aaPredicted RBP22.21■■□□□ 1.15
NEK3-206ENST00000611833 PPP6R1Q9UPN7 881 aa22.2■■□□□ 1.15
NEK3-206ENST00000611833 A2ML1A8K2U0 1454 aa22.2■■□□□ 1.14
NEK3-206ENST00000611833 MED14O60244 1454 aa22.2■■□□□ 1.14
NEK3-206ENST00000611833 CDK19Q9BWU1 502 aa22.2■■□□□ 1.14
NEK3-206ENST00000611833 MYH16Q9H6N6 1097 aa22.2■■□□□ 1.14
NEK3-206ENST00000611833 SPATA31D1Q6ZQQ2 1576 aa22.19■■□□□ 1.14
NEK3-206ENST00000611833 DAXXQ9UER7 740 aaPredicted RBP22.18■■□□□ 1.14
NEK3-206ENST00000611833 PPM1GO15355 546 aaPredicted RBP22.17■■□□□ 1.14
NEK3-206ENST00000611833 PLEKHF1Q96S99 279 aa22.17■■□□□ 1.14
NEK3-206ENST00000611833 U2SURPO15042 1029 aaKnown RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms