RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 UPF2Q9HAU5 1272 aaKnown RBP10.9□□□□□ -0.66
COMMD3-215ENST00000602574 KTN1Q86UP2 1357 aaKnown RBP10.9□□□□□ -0.66
COMMD3-215ENST00000602574 KIF27Q86VH2 1401 aa10.9□□□□□ -0.67
COMMD3-215ENST00000602574 ARHGAP35Q9NRY4 1499 aa10.9□□□□□ -0.67
COMMD3-215ENST00000602574 RINLQ6ZS11 566 aa10.89□□□□□ -0.67
COMMD3-215ENST00000602574 RPAINQ86UA6 219 aa10.89□□□□□ -0.67
COMMD3-215ENST00000602574 LIG1P18858 919 aa10.89□□□□□ -0.67
COMMD3-215ENST00000602574 HDAC1Q13547 482 aaPredicted RBP10.89□□□□□ -0.67
COMMD3-215ENST00000602574 RASSF4Q9H2L5 321 aa10.89□□□□□ -0.67
COMMD3-215ENST00000602574 IGF1RP08069 1367 aa10.89□□□□□ -0.67
COMMD3-215ENST00000602574 TERF2Q15554 542 aa10.88□□□□□ -0.67
COMMD3-215ENST00000602574 ANKRD7Q92527 254 aa10.88□□□□□ -0.67
COMMD3-215ENST00000602574 SKOR2Q2VWA4 1001 aaPredicted RBP10.88□□□□□ -0.67
COMMD3-215ENST00000602574 C8orf34Q49A92 452 aa10.88□□□□□ -0.67
COMMD3-215ENST00000602574 PDLIM2Q96JY6 352 aa10.88□□□□□ -0.67
COMMD3-215ENST00000602574 PAIP2Q9BPZ3 127 aaKnown RBP10.88□□□□□ -0.67
COMMD3-215ENST00000602574 RSPH14Q9UHP6 348 aa10.88□□□□□ -0.67
COMMD3-215ENST00000602574 POLR1AO95602 1720 aaPredicted RBP10.87□□□□□ -0.67
COMMD3-215ENST00000602574 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.87□□□□□ -0.67
COMMD3-215ENST00000602574 CTAGE5O15320 804 aa10.87□□□□□ -0.67
COMMD3-215ENST00000602574 NEFHP12036 1026 aa10.87□□□□□ -0.67
COMMD3-215ENST00000602574 LRRC9Q6ZRR7 1453 aa10.87□□□□□ -0.67
COMMD3-215ENST00000602574 GSCP56915 257 aaPredicted RBP10.87□□□□□ -0.67
COMMD3-215ENST00000602574 ZNF513Q8N8E2 541 aaPredicted RBP10.87□□□□□ -0.67
COMMD3-215ENST00000602574 TSPAN18Q96SJ8 248 aa10.87□□□□□ -0.67
COMMD3-215ENST00000602574 SYCP1Q15431 976 aa10.86□□□□□ -0.67
COMMD3-215ENST00000602574 RGL3Q3MIN7 710 aa10.86□□□□□ -0.67
COMMD3-215ENST00000602574 ZC3H12AQ5D1E8 599 aaKnown RBP10.86□□□□□ -0.67
COMMD3-215ENST00000602574 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.86□□□□□ -0.67
COMMD3-215ENST00000602574 ATAD2BQ9ULI0 1458 aa10.86□□□□□ -0.67
COMMD3-215ENST00000602574 PAXBP1Q9Y5B6 917 aa10.86□□□□□ -0.67
COMMD3-215ENST00000602574 MYOM3Q5VTT5 1437 aa10.86□□□□□ -0.67
COMMD3-215ENST00000602574 LRCH2Q5VUJ6 765 aa10.86□□□□□ -0.67
COMMD3-215ENST00000602574 CCDC91Q7Z6B0 441 aa10.86□□□□□ -0.67
COMMD3-215ENST00000602574 PNISRQ8TF01 805 aaKnown RBP10.86□□□□□ -0.67
COMMD3-215ENST00000602574 NASPP49321 788 aaPredicted RBP10.85□□□□□ -0.67
COMMD3-215ENST00000602574 COQ9O75208 318 aa10.84□□□□□ -0.67
COMMD3-215ENST00000602574 RRP1P56182 461 aaKnown RBP10.84□□□□□ -0.67
COMMD3-215ENST00000602574 MUM1L1Q5H9M0 696 aa10.84□□□□□ -0.67
COMMD3-215ENST00000602574 CALR3Q96L12 384 aaKnown RBP10.84□□□□□ -0.67
COMMD3-215ENST00000602574 CXorf56Q9H5V9 222 aa10.84□□□□□ -0.67
COMMD3-215ENST00000602574 PANK3Q9H999 370 aa10.84□□□□□ -0.67
COMMD3-215ENST00000602574 AQRO60306 1485 aaKnown RBP eCLIP10.84□□□□□ -0.676e-7■■■■□ 24.7
COMMD3-215ENST00000602574 XPCQ01831 940 aaPredicted RBP10.84□□□□□ -0.67
COMMD3-215ENST00000602574 KANK4Q5T7N3 995 aaPredicted RBP10.84□□□□□ -0.67
COMMD3-215ENST00000602574 SUFUQ9UMX1 484 aa10.84□□□□□ -0.67
COMMD3-215ENST00000602574 CNTLNQ9NXG0 1405 aa10.84□□□□□ -0.67
COMMD3-215ENST00000602574 CCDC196A0A1B0GTZ2 297 aa10.83□□□□□ -0.68
COMMD3-215ENST00000602574 MPHOSPH10O00566 681 aaKnown RBP10.83□□□□□ -0.68
COMMD3-215ENST00000602574 CASQ1P31415 396 aa10.83□□□□□ -0.68
COMMD3-215ENST00000602574 FAM50AQ14320 339 aaKnown RBP10.83□□□□□ -0.68
COMMD3-215ENST00000602574 MORC2Q9Y6X9 1032 aaPredicted RBP10.83□□□□□ -0.68
COMMD3-215ENST00000602574 ABCA5Q8WWZ7 1642 aa10.83□□□□□ -0.68
COMMD3-215ENST00000602574 BICRAQ9NZM4 1560 aa10.83□□□□□ -0.68
COMMD3-215ENST00000602574 RAD51AP2Q09MP3 1159 aa10.83□□□□□ -0.68
COMMD3-215ENST00000602574 ZBTB12Q9Y330 459 aaPredicted RBP10.83□□□□□ -0.68
COMMD3-215ENST00000602574 ANKRD33BA6NCL7 494 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 GOLGA6L6A8MZA4 724 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 REC8O95072 547 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 TBC1D22AQ8WUA7 517 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 UVSSAQ2YD98 709 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 EXOC8Q8IYI6 725 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 FAM9BQ8IZU0 186 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 CCDC39Q9UFE4 941 aa10.82□□□□□ -0.68
COMMD3-215ENST00000602574 EFCAB5A4FU69 1503 aa10.81□□□□□ -0.68
COMMD3-215ENST00000602574 ARHGAP31Q2M1Z3 1444 aa10.81□□□□□ -0.68
COMMD3-215ENST00000602574 GZF1Q9H116 711 aaPredicted RBP10.81□□□□□ -0.68
COMMD3-215ENST00000602574 CHMP5Q9NZZ3 219 aa10.81□□□□□ -0.68
COMMD3-215ENST00000602574 KANK1Q14678 1352 aa10.81□□□□□ -0.68
COMMD3-215ENST00000602574 NPC1L1Q9UHC9 1359 aa10.81□□□□□ -0.68
COMMD3-215ENST00000602574 GOLGA6L22H0YM25 854 aa10.81□□□□□ -0.68
COMMD3-215ENST00000602574 IPO7O95373 1038 aaKnown RBP10.81□□□□□ -0.68
COMMD3-215ENST00000602574 HSPA5P11021 654 aaKnown RBP10.81□□□□□ -0.68
COMMD3-215ENST00000602574 BCL2L12Q9HB09 334 aa10.81□□□□□ -0.68
COMMD3-215ENST00000602574 DDX41Q9UJV9 622 aaKnown RBP10.81□□□□□ -0.68
COMMD3-215ENST00000602574 UACAQ9BZF9 1416 aa10.8□□□□□ -0.68
COMMD3-215ENST00000602574 HMGXB3Q12766 1538 aa10.8□□□□□ -0.68
COMMD3-215ENST00000602574 SPDYE4A6NLX3 237 aa10.8□□□□□ -0.68
COMMD3-215ENST00000602574 IPO8O15397 1037 aaKnown RBP10.8□□□□□ -0.68
COMMD3-215ENST00000602574 CHAF1AQ13111 956 aaPredicted RBP10.8□□□□□ -0.68
COMMD3-215ENST00000602574 GAS2L3Q86XJ1 694 aa10.8□□□□□ -0.68
COMMD3-215ENST00000602574 GOLGA6L1Q8N7Z2 621 aa10.8□□□□□ -0.68
COMMD3-215ENST00000602574 FYCO1Q9BQS8 1478 aa10.79□□□□□ -0.68
COMMD3-215ENST00000602574 NLRP1Q9C000 1473 aa10.79□□□□□ -0.68
COMMD3-215ENST00000602574 KDM2BQ8NHM5 1336 aa10.79□□□□□ -0.68
COMMD3-215ENST00000602574 TONSLQ96HA7 1378 aa10.79□□□□□ -0.68
COMMD3-215ENST00000602574 MSL3Q8N5Y2 521 aaKnown RBP10.79□□□□□ -0.68
COMMD3-215ENST00000602574 EXOC6Q8TAG9 804 aa10.79□□□□□ -0.68
COMMD3-215ENST00000602574 ATP2B1P20020 1258 aa10.78□□□□□ -0.68
COMMD3-215ENST00000602574 SUGP1Q8IWZ8 645 aaKnown RBP10.78□□□□□ -0.68
COMMD3-215ENST00000602574 TACO1Q9BSH4 297 aaKnown RBP10.78□□□□□ -0.68
COMMD3-215ENST00000602574 USP19O94966 1318 aa10.78□□□□□ -0.68
COMMD3-215ENST00000602574 CCDC18Q5T9S5 1454 aa10.78□□□□□ -0.68
COMMD3-215ENST00000602574 CTIFO43310 598 aaKnown RBP10.78□□□□□ -0.68
COMMD3-215ENST00000602574 U2AF2P26368 475 aaKnown RBP eCLIP10.78□□□□□ -0.682e-8■■■□□ 15.6
COMMD3-215ENST00000602574 CYP2C19P33261 490 aa10.78□□□□□ -0.68
COMMD3-215ENST00000602574 ATP6V1AP38606 617 aa10.78□□□□□ -0.68
COMMD3-215ENST00000602574 KIAA2012Q0VF49 1180 aa10.78□□□□□ -0.68
COMMD3-215ENST00000602574 ARHGEF1Q92888 912 aaKnown RBP10.78□□□□□ -0.68
COMMD3-215ENST00000602574 NOL10Q9BSC4 688 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms