RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 NALCNQ8IZF0 1738 aa14.26□□□□□ -0.13
VRK3-224ENST00000601849 CCDC144AA2RUR9 1427 aa14.25□□□□□ -0.13
VRK3-224ENST00000601849 STK26Q9P289 416 aa14.25□□□□□ -0.13
VRK3-224ENST00000601849 ANKRD30BQ9BXX2 1392 aa14.24□□□□□ -0.13
VRK3-224ENST00000601849 FNBP4Q8N3X1 1017 aaPredicted RBP14.23□□□□□ -0.13
VRK3-224ENST00000601849 MPHOSPH9Q99550 1183 aa14.23□□□□□ -0.13
VRK3-224ENST00000601849 PRAG1Q86YV5 1406 aa14.23□□□□□ -0.13
VRK3-224ENST00000601849 FOXO3O43524 673 aa14.22□□□□□ -0.13
VRK3-224ENST00000601849 ATAD2Q6PL18 1390 aa14.22□□□□□ -0.13
VRK3-224ENST00000601849 ADGRF5Q8IZF2 1346 aa14.2□□□□□ -0.14
VRK3-224ENST00000601849 WAPLQ7Z5K2 1190 aa14.2□□□□□ -0.14
VRK3-224ENST00000601849 RGS12O14924 1447 aa14.2□□□□□ -0.14
VRK3-224ENST00000601849 LAMC1P11047 1609 aa14.19□□□□□ -0.14
VRK3-224ENST00000601849 NUTM2FA1L443 756 aa14.19□□□□□ -0.14
VRK3-224ENST00000601849 PSME1Q06323 249 aa14.19□□□□□ -0.14
VRK3-224ENST00000601849 CCDC125Q86Z20 511 aa14.19□□□□□ -0.14
VRK3-224ENST00000601849 ABCC11Q96J66 1382 aa14.19□□□□□ -0.14
VRK3-224ENST00000601849 PPLO60437 1756 aa14.19□□□□□ -0.14
VRK3-224ENST00000601849 HAP1P54257 671 aaPredicted RBP14.18□□□□□ -0.14
VRK3-224ENST00000601849 TMEM132EQ6IEE7 984 aa14.18□□□□□ -0.14
VRK3-224ENST00000601849 SIRT1Q96EB6 747 aa14.18□□□□□ -0.14
VRK3-224ENST00000601849 XPCQ01831 940 aaPredicted RBP14.17□□□□□ -0.14
VRK3-224ENST00000601849 CDC42BPGQ6DT37 1551 aa14.17□□□□□ -0.14
VRK3-224ENST00000601849 GJD4Q96KN9 370 aaPredicted RBP14.16□□□□□ -0.14
VRK3-224ENST00000601849 DHX57Q6P158 1386 aaKnown RBP14.16□□□□□ -0.14
VRK3-224ENST00000601849 KRT28Q7Z3Y7 464 aa14.15□□□□□ -0.14
VRK3-224ENST00000601849 ZRANB1Q9UGI0 708 aa14.15□□□□□ -0.14
VRK3-224ENST00000601849 TECPR2O15040 1411 aa14.15□□□□□ -0.14
VRK3-224ENST00000601849 COL22A1Q8NFW1 1626 aaPredicted RBP14.14□□□□□ -0.15
VRK3-224ENST00000601849 SPATA31E1Q6ZUB1 1445 aa14.14□□□□□ -0.15
VRK3-224ENST00000601849 UNC5CLQ8IV45 518 aa14.13□□□□□ -0.15
VRK3-224ENST00000601849 C14orf93Q9H972 538 aaKnown RBP14.13□□□□□ -0.15
VRK3-224ENST00000601849 POGKQ9P215 609 aa14.13□□□□□ -0.15
VRK3-224ENST00000601849 ATRNO75882 1429 aa14.13□□□□□ -0.15
VRK3-224ENST00000601849 YTHDC2Q9H6S0 1430 aaKnown RBP14.13□□□□□ -0.15
VRK3-224ENST00000601849 SPATA31A3Q5VYP0 1347 aa14.13□□□□□ -0.15
VRK3-224ENST00000601849 PXDNQ92626 1479 aa14.12□□□□□ -0.15
VRK3-224ENST00000601849 LMOD2Q6P5Q4 547 aa14.12□□□□□ -0.15
VRK3-224ENST00000601849 PHF8Q9UPP1 1060 aa14.12□□□□□ -0.15
VRK3-224ENST00000601849 MYOM2P54296 1465 aa14.12□□□□□ -0.15
VRK3-224ENST00000601849 PIK3C2GO75747 1445 aa14.11□□□□□ -0.15
VRK3-224ENST00000601849 SF3B2Q13435 895 aaKnown RBP14.1□□□□□ -0.15
VRK3-224ENST00000601849 CCDC9Q9Y3X0 531 aaKnown RBP14.1□□□□□ -0.15
VRK3-224ENST00000601849 BCL9LQ86UU0 1499 aa14.1□□□□□ -0.15
VRK3-224ENST00000601849 CFAP70Q5T0N1 1121 aa14.09□□□□□ -0.15
VRK3-224ENST00000601849 PRAM1Q96QH2 718 aa14.09□□□□□ -0.15
VRK3-224ENST00000601849 PLEKHH1Q9ULM0 1364 aa14.09□□□□□ -0.15
VRK3-224ENST00000601849 SAFB2Q14151 953 aaKnown RBP eCLIP14.08□□□□□ -0.16
VRK3-224ENST00000601849 KIF1AQ12756 1690 aa14.07□□□□□ -0.16
VRK3-224ENST00000601849 PLEKHG5O94827 1062 aa14.07□□□□□ -0.16
VRK3-224ENST00000601849 STAC3Q96MF2 364 aa14.07□□□□□ -0.16
VRK3-224ENST00000601849 ARHGEF10O15013 1369 aa14.07□□□□□ -0.16
VRK3-224ENST00000601849 SRCAPQ6ZRS2 3230 aa14.07□□□□□ -0.16
VRK3-224ENST00000601849 KNDC1Q76NI1 1749 aa14.07□□□□□ -0.16
VRK3-224ENST00000601849 IFT172Q9UG01 1749 aa14.06□□□□□ -0.16
VRK3-224ENST00000601849 SBNO1A3KN83 1393 aa14.06□□□□□ -0.16
VRK3-224ENST00000601849 EP400Q96L91 3159 aa14.05□□□□□ -0.16
VRK3-224ENST00000601849 VPS72Q15906 364 aa14.05□□□□□ -0.16
VRK3-224ENST00000601849 FMN2Q9NZ56 1722 aa14.04□□□□□ -0.16
VRK3-224ENST00000601849 MARF1Q9Y4F3 1742 aaKnown RBP14.04□□□□□ -0.16
VRK3-224ENST00000601849 A0A0G2JS52 829 aa14.04□□□□□ -0.16
VRK3-224ENST00000601849 MYT1Q01538 1121 aa14.04□□□□□ -0.16
VRK3-224ENST00000601849 PMFBP1Q8TBY8 1022 aa14.04□□□□□ -0.16
VRK3-224ENST00000601849 CABLES1Q8TDN4 633 aa14.04□□□□□ -0.16
VRK3-224ENST00000601849 EIF3AQ14152 1382 aaKnown RBP14.04□□□□□ -0.16
VRK3-224ENST00000601849 GPRASP1Q5JY77 1395 aa14.04□□□□□ -0.16
VRK3-224ENST00000601849 TNS3Q68CZ2 1445 aa14.04□□□□□ -0.16
VRK3-224ENST00000601849 SEPT12Q8IYM1 358 aa14.03□□□□□ -0.16
VRK3-224ENST00000601849 TRAK1Q9UPV9 953 aa14.03□□□□□ -0.16
VRK3-224ENST00000601849 KDM2AQ9Y2K7 1162 aa14.03□□□□□ -0.16
VRK3-224ENST00000601849 SLIT2O94813 1529 aa14.03□□□□□ -0.16
VRK3-224ENST00000601849 RALGAPBQ86X10 1494 aa14.02□□□□□ -0.16
VRK3-224ENST00000601849 BLMP54132 1417 aaPredicted RBP14.02□□□□□ -0.16
VRK3-224ENST00000601849 DCAF11Q8TEB1 546 aa14.02□□□□□ -0.17
VRK3-224ENST00000601849 NRXN1Q9ULB1 1477 aa14.01□□□□□ -0.17
VRK3-224ENST00000601849 ANKARQ7Z5J8 1434 aa14.01□□□□□ -0.17
VRK3-224ENST00000601849 KRT27Q7Z3Y8 459 aa14.01□□□□□ -0.17
VRK3-224ENST00000601849 NGDNQ8NEJ9 315 aaKnown RBP14.01□□□□□ -0.17
VRK3-224ENST00000601849 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.01□□□□□ -0.17
VRK3-224ENST00000601849 ONECUT3O60422 494 aaPredicted RBP14□□□□□ -0.17
VRK3-224ENST00000601849 PAK3O75914 559 aaPredicted RBP14□□□□□ -0.17
VRK3-224ENST00000601849 FAM83GA6ND36 823 aa13.99□□□□□ -0.17
VRK3-224ENST00000601849 HIRIP3Q9BW71 556 aaPredicted RBP13.99□□□□□ -0.17
VRK3-224ENST00000601849 USP32Q8NFA0 1604 aa13.99□□□□□ -0.17
VRK3-224ENST00000601849 DLC1Q96QB1 1528 aa13.99□□□□□ -0.17
VRK3-224ENST00000601849 RAB3GAP2Q9H2M9 1393 aa13.98□□□□□ -0.17
VRK3-224ENST00000601849 MINK1Q8N4C8 1332 aaPredicted RBP13.98□□□□□ -0.17
VRK3-224ENST00000601849 WASLO00401 505 aaPredicted RBP13.98□□□□□ -0.17
VRK3-224ENST00000601849 BTG4Q9NY30 223 aa13.98□□□□□ -0.17
VRK3-224ENST00000601849 BAG6P46379 1132 aa13.97□□□□□ -0.17
VRK3-224ENST00000601849 HRCP23327 699 aa13.96□□□□□ -0.17
VRK3-224ENST00000601849 RGPD8O14715 1765 aaPredicted RBP13.96□□□□□ -0.18
VRK3-224ENST00000601849 GLI3P10071 1580 aa13.96□□□□□ -0.18
VRK3-224ENST00000601849 FAM98CQ17RN3 349 aaKnown RBP13.95□□□□□ -0.18
VRK3-224ENST00000601849 DEFB132Q7Z7B7 95 aa13.95□□□□□ -0.18
VRK3-224ENST00000601849 NWD2Q9ULI1 1742 aa13.94□□□□□ -0.18
VRK3-224ENST00000601849 PRDM11Q9NQV5 511 aa13.93□□□□□ -0.18
VRK3-224ENST00000601849 NUDT16Q96DE0 195 aaKnown RBP13.92□□□□□ -0.18
VRK3-224ENST00000601849 ADGRB2O60241 1585 aa13.92□□□□□ -0.18
VRK3-224ENST00000601849 TULP4Q9NRJ4 1543 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms