RNA–Protein interactions for RNA: ENST00000601038.5

SCAF1-204, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 491 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-204ENST00000601038 ABCC11Q96J66 1382 aa25.18■■□□□ 1.62
SCAF1-204ENST00000601038 AFF2P51816 1311 aa25.18■■□□□ 1.62
SCAF1-204ENST00000601038 RXRBP28702 533 aa25.18■■□□□ 1.62
SCAF1-204ENST00000601038 TMEM132EQ6IEE7 984 aa25.18■■□□□ 1.62
SCAF1-204ENST00000601038 WAPLQ7Z5K2 1190 aa25.17■■□□□ 1.62
SCAF1-204ENST00000601038 CDC42BPGQ6DT37 1551 aa25.16■■□□□ 1.62
SCAF1-204ENST00000601038 ESCO1Q5FWF5 840 aa25.15■■□□□ 1.62
SCAF1-204ENST00000601038 C8orf37Q96NL8 207 aa25.15■■□□□ 1.62
SCAF1-204ENST00000601038 C14orf93Q9H972 538 aaKnown RBP25.14■■□□□ 1.62
SCAF1-204ENST00000601038 RAB3GAP2Q9H2M9 1393 aa25.14■■□□□ 1.61
SCAF1-204ENST00000601038 SIRT1Q96EB6 747 aa25.12■■□□□ 1.61
SCAF1-204ENST00000601038 YTHDC2Q9H6S0 1430 aaKnown RBP25.12■■□□□ 1.61
SCAF1-204ENST00000601038 NPHP3Q7Z494 1330 aa25.12■■□□□ 1.61
SCAF1-204ENST00000601038 PLEKHH1Q9ULM0 1364 aa25.1■■□□□ 1.61
SCAF1-204ENST00000601038 ADAMTS2O95450 1211 aa25.1■■□□□ 1.61
SCAF1-204ENST00000601038 CDK12Q9NYV4 1490 aaPredicted RBP25.09■■□□□ 1.61
SCAF1-204ENST00000601038 NRXN1Q9ULB1 1477 aa25.09■■□□□ 1.61
SCAF1-204ENST00000601038 KNDC1Q76NI1 1749 aa25.09■■□□□ 1.61
SCAF1-204ENST00000601038 NGLY1Q96IV0 654 aa25.09■■□□□ 1.61
SCAF1-204ENST00000601038 QTRT2Q9H974 415 aaKnown RBP25.09■■□□□ 1.61
SCAF1-204ENST00000601038 FOXO3O43524 673 aa25.08■■□□□ 1.61
SCAF1-204ENST00000601038 MYOM2P54296 1465 aa25.08■■□□□ 1.6
SCAF1-204ENST00000601038 CFAP70Q5T0N1 1121 aa25.07■■□□□ 1.6
SCAF1-204ENST00000601038 DHX57Q6P158 1386 aaKnown RBP25.06■■□□□ 1.6
SCAF1-204ENST00000601038 NUTM2FA1L443 756 aa25.06■■□□□ 1.6
SCAF1-204ENST00000601038 RBM6P78332 1123 aaKnown RBP25.06■■□□□ 1.6
SCAF1-204ENST00000601038 UPF1Q92900 1129 aaKnown RBP eCLIP25.05■■□□□ 1.6
SCAF1-204ENST00000601038 PXDNQ92626 1479 aa25.04■■□□□ 1.6
SCAF1-204ENST00000601038 COL22A1Q8NFW1 1626 aaPredicted RBP25.02■■□□□ 1.6
SCAF1-204ENST00000601038 XPCQ01831 940 aaPredicted RBP25.02■■□□□ 1.6
SCAF1-204ENST00000601038 HRCP23327 699 aa25.01■■□□□ 1.59
SCAF1-204ENST00000601038 FNBP4Q8N3X1 1017 aaPredicted RBP25■■□□□ 1.59
SCAF1-204ENST00000601038 USP21Q9UK80 565 aa25■■□□□ 1.59
SCAF1-204ENST00000601038 FMN2Q9NZ56 1722 aa25■■□□□ 1.59
SCAF1-204ENST00000601038 PRAM1Q96QH2 718 aa24.97■■□□□ 1.59
SCAF1-204ENST00000601038 TRPC5Q9UL62 973 aaPredicted RBP24.97■■□□□ 1.59
SCAF1-204ENST00000601038 RGS12O14924 1447 aa24.96■■□□□ 1.59
SCAF1-204ENST00000601038 STAC3Q96MF2 364 aa24.95■■□□□ 1.58
SCAF1-204ENST00000601038 SAFB2Q14151 953 aaKnown RBP eCLIP24.94■■□□□ 1.58
SCAF1-204ENST00000601038 KRT28Q7Z3Y7 464 aa24.94■■□□□ 1.58
SCAF1-204ENST00000601038 PHF8Q9UPP1 1060 aa24.94■■□□□ 1.58
SCAF1-204ENST00000601038 KIF1AQ12756 1690 aa24.94■■□□□ 1.58
SCAF1-204ENST00000601038 SPATA31A3Q5VYP0 1347 aa24.93■■□□□ 1.58
SCAF1-204ENST00000601038 DLC1Q96QB1 1528 aa24.93■■□□□ 1.58
SCAF1-204ENST00000601038 DCAF11Q8TEB1 546 aa24.93■■□□□ 1.58
SCAF1-204ENST00000601038 POGKQ9P215 609 aa24.93■■□□□ 1.58
SCAF1-204ENST00000601038 KDM2AQ9Y2K7 1162 aa24.93■■□□□ 1.58
SCAF1-204ENST00000601038 ADGRB1O14514 1584 aa24.9■■□□□ 1.58
SCAF1-204ENST00000601038 ATRNO75882 1429 aa24.9■■□□□ 1.58
SCAF1-204ENST00000601038 PSME1Q06323 249 aa24.89■■□□□ 1.58
SCAF1-204ENST00000601038 RGPD8O14715 1765 aaPredicted RBP24.89■■□□□ 1.57
SCAF1-204ENST00000601038 BCL9LQ86UU0 1499 aa24.89■■□□□ 1.57
SCAF1-204ENST00000601038 TRAK1Q9UPV9 953 aa24.88■■□□□ 1.57
SCAF1-204ENST00000601038 MARF1Q9Y4F3 1742 aaKnown RBP24.87■■□□□ 1.57
SCAF1-204ENST00000601038 ANKARQ7Z5J8 1434 aa24.86■■□□□ 1.57
SCAF1-204ENST00000601038 SBNO1A3KN83 1393 aa24.84■■□□□ 1.57
SCAF1-204ENST00000601038 TNS3Q68CZ2 1445 aa24.84■■□□□ 1.57
SCAF1-204ENST00000601038 ADGRB2O60241 1585 aa24.83■■□□□ 1.57
SCAF1-204ENST00000601038 GJD4Q96KN9 370 aaPredicted RBP24.82■■□□□ 1.56
SCAF1-204ENST00000601038 HIRIP3Q9BW71 556 aaPredicted RBP24.82■■□□□ 1.56
SCAF1-204ENST00000601038 UNC5CLQ8IV45 518 aa24.81■■□□□ 1.56
SCAF1-204ENST00000601038 PMFBP1Q8TBY8 1022 aa24.81■■□□□ 1.56
SCAF1-204ENST00000601038 MINK1Q8N4C8 1332 aaPredicted RBP24.81■■□□□ 1.56
SCAF1-204ENST00000601038 ATAD2Q6PL18 1390 aa24.8■■□□□ 1.56
SCAF1-204ENST00000601038 SLIT2O94813 1529 aa24.8■■□□□ 1.56
SCAF1-204ENST00000601038 USP32Q8NFA0 1604 aa24.79■■□□□ 1.56
SCAF1-204ENST00000601038 HAP1P54257 671 aaPredicted RBP24.79■■□□□ 1.56
SCAF1-204ENST00000601038 ARHGEF10O15013 1369 aa24.79■■□□□ 1.56
SCAF1-204ENST00000601038 EIF3AQ14152 1382 aaKnown RBP24.79■■□□□ 1.56
SCAF1-204ENST00000601038 WASLO00401 505 aaPredicted RBP24.78■■□□□ 1.56
SCAF1-204ENST00000601038 LMOD2Q6P5Q4 547 aa24.78■■□□□ 1.56
SCAF1-204ENST00000601038 CABLES1Q8TDN4 633 aa24.78■■□□□ 1.56
SCAF1-204ENST00000601038 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.76■■□□□ 1.55
SCAF1-204ENST00000601038 PRR36Q9H6K5 1346 aa24.76■■□□□ 1.55
SCAF1-204ENST00000601038 GPRASP1Q5JY77 1395 aa24.74■■□□□ 1.55
SCAF1-204ENST00000601038 TULP4Q9NRJ4 1543 aa24.74■■□□□ 1.55
SCAF1-204ENST00000601038 PLEKHG5O94827 1062 aa24.72■■□□□ 1.55
SCAF1-204ENST00000601038 RALGAPBQ86X10 1494 aa24.71■■□□□ 1.55
SCAF1-204ENST00000601038 VPS72Q15906 364 aa24.69■■□□□ 1.54
SCAF1-204ENST00000601038 NGDNQ8NEJ9 315 aaKnown RBP24.69■■□□□ 1.54
SCAF1-204ENST00000601038 GLI3P10071 1580 aa24.68■■□□□ 1.54
SCAF1-204ENST00000601038 FAM83GA6ND36 823 aa24.68■■□□□ 1.54
SCAF1-204ENST00000601038 CCDC125Q86Z20 511 aa24.68■■□□□ 1.54
SCAF1-204ENST00000601038 ARHGEF28Q8N1W1 1705 aaKnown RBP24.68■■□□□ 1.54
SCAF1-204ENST00000601038 TRPM3Q9HCF6 1732 aaPredicted RBP24.68■■□□□ 1.54
SCAF1-204ENST00000601038 ABCA3Q99758 1704 aa24.66■■□□□ 1.54
SCAF1-204ENST00000601038 NUDT16Q96DE0 195 aaKnown RBP24.66■■□□□ 1.54
SCAF1-204ENST00000601038 NWD2Q9ULI1 1742 aa24.65■■□□□ 1.54
SCAF1-204ENST00000601038 ALS2Q96Q42 1657 aa24.64■■□□□ 1.53
SCAF1-204ENST00000601038 KIAA1210Q9ULL0 1709 aa24.64■■□□□ 1.53
SCAF1-204ENST00000601038 PLCH1Q4KWH8 1693 aa24.63■■□□□ 1.53
SCAF1-204ENST00000601038 ONECUT3O60422 494 aaPredicted RBP24.63■■□□□ 1.53
SCAF1-204ENST00000601038 CDK19Q9BWU1 502 aa24.63■■□□□ 1.53
SCAF1-204ENST00000601038 CCDC9Q9Y3X0 531 aaKnown RBP24.63■■□□□ 1.53
SCAF1-204ENST00000601038 PAK3O75914 559 aaPredicted RBP24.62■■□□□ 1.53
SCAF1-204ENST00000601038 NBPF1Q3BBV0 1214 aa24.62■■□□□ 1.53
SCAF1-204ENST00000601038 SEPT12Q8IYM1 358 aa24.62■■□□□ 1.53
SCAF1-204ENST00000601038 ATP7BP35670 1465 aa24.62■■□□□ 1.53
SCAF1-204ENST00000601038 ITSN1Q15811 1721 aa24.59■■□□□ 1.53
SCAF1-204ENST00000601038 BTG4Q9NY30 223 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms