RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 RGS3P49796 1198 aa26.27■■□□□ 1.8
SHKBP1-225ENST00000600733 ABCC3O15438 1527 aa26.27■■□□□ 1.8
SHKBP1-225ENST00000600733 CFAP74Q9C0B2 1584 aa26.26■■□□□ 1.79
SHKBP1-225ENST00000600733 C8orf34Q49A92 452 aa26.26■■□□□ 1.79
SHKBP1-225ENST00000600733 RRP7AQ9Y3A4 280 aaKnown RBP26.26■■□□□ 1.79
SHKBP1-225ENST00000600733 FAM161AQ3B820 660 aa26.26■■□□□ 1.79
SHKBP1-225ENST00000600733 DDRGK1Q96HY6 314 aa26.25■■□□□ 1.79
SHKBP1-225ENST00000600733 SIGLEC1Q9BZZ2 1709 aa26.23■■□□□ 1.79
SHKBP1-225ENST00000600733 RPGRIP1LQ68CZ1 1315 aa26.23■■□□□ 1.79
SHKBP1-225ENST00000600733 NEFMP07197 916 aa26.22■■□□□ 1.79
SHKBP1-225ENST00000600733 RUNDC1Q96C34 613 aa26.22■■□□□ 1.79
SHKBP1-225ENST00000600733 GLI2P10070 1586 aa26.21■■□□□ 1.79
SHKBP1-225ENST00000600733 CAMSAP1Q5T5Y3 1602 aa26.21■■□□□ 1.79
SHKBP1-225ENST00000600733 MTHFSP49914 203 aa26.21■■□□□ 1.79
SHKBP1-225ENST00000600733 IGHDP01880 384 aa26.21■■□□□ 1.79
SHKBP1-225ENST00000600733 TCP11L2Q8N4U5 519 aa26.21■■□□□ 1.79
SHKBP1-225ENST00000600733 CGNL1Q0VF96 1302 aa26.2■■□□□ 1.79
SHKBP1-225ENST00000600733 RAPGEF3O95398 923 aa26.2■■□□□ 1.78
SHKBP1-225ENST00000600733 PANK1Q8TE04 598 aa26.2■■□□□ 1.78
SHKBP1-225ENST00000600733 PDE3AQ14432 1141 aa26.19■■□□□ 1.78
SHKBP1-225ENST00000600733 USP32Q8NFA0 1604 aa26.19■■□□□ 1.78
SHKBP1-225ENST00000600733 CANXP27824 592 aaKnown RBP26.19■■□□□ 1.78
SHKBP1-225ENST00000600733 IQSEC2Q5JU85 1478 aa26.19■■□□□ 1.78
SHKBP1-225ENST00000600733 SLC4A3P48751 1232 aa26.18■■□□□ 1.78
SHKBP1-225ENST00000600733 COG6Q9Y2V7 657 aa26.18■■□□□ 1.78
SHKBP1-225ENST00000600733 TULP4Q9NRJ4 1543 aa26.17■■□□□ 1.78
SHKBP1-225ENST00000600733 ARHGEF28Q8N1W1 1705 aaKnown RBP26.17■■□□□ 1.78
SHKBP1-225ENST00000600733 FRAT1Q92837 279 aaPredicted RBP26.16■■□□□ 1.78
SHKBP1-225ENST00000600733 EVC2Q86UK5 1308 aa26.16■■□□□ 1.78
SHKBP1-225ENST00000600733 PIK3C2BO00750 1634 aa26.15■■□□□ 1.78
SHKBP1-225ENST00000600733 NEXMIFQ5QGS0 1516 aa26.15■■□□□ 1.78
SHKBP1-225ENST00000600733 SENP3Q9H4L4 574 aaPredicted RBP26.15■■□□□ 1.78
SHKBP1-225ENST00000600733 PPM1GO15355 546 aaPredicted RBP26.14■■□□□ 1.78
SHKBP1-225ENST00000600733 SAFB2Q14151 953 aaKnown RBP eCLIP26.14■■□□□ 1.78
SHKBP1-225ENST00000600733 PHF23Q9BUL5 403 aaPredicted RBP26.14■■□□□ 1.78
SHKBP1-225ENST00000600733 VGFO15240 615 aaPredicted RBP26.14■■□□□ 1.77
SHKBP1-225ENST00000600733 CLUAP1Q96AJ1 413 aa26.14■■□□□ 1.77
SHKBP1-225ENST00000600733 CABP2Q9NPB3 220 aa26.14■■□□□ 1.77
SHKBP1-225ENST00000600733 NINLQ9Y2I6 1382 aa26.13■■□□□ 1.77
SHKBP1-225ENST00000600733 RARSP54136 660 aaKnown RBP26.13■■□□□ 1.77
SHKBP1-225ENST00000600733 CFAP53Q96M91 514 aa26.13■■□□□ 1.77
SHKBP1-225ENST00000600733 ANKRD36BQ8N2N9 1353 aa26.12■■□□□ 1.77
SHKBP1-225ENST00000600733 OSCARQ8IYS5 282 aa26.12■■□□□ 1.77
SHKBP1-225ENST00000600733 USP35Q9P2H5 1018 aa26.12■■□□□ 1.77
SHKBP1-225ENST00000600733 WDR63Q8IWG1 891 aa26.09■■□□□ 1.77
SHKBP1-225ENST00000600733 IDI1Q13907 227 aa26.09■■□□□ 1.77
SHKBP1-225ENST00000600733 BCL2L13Q9BXK5 485 aa26.09■■□□□ 1.77
SHKBP1-225ENST00000600733 DIP2CQ9Y2E4 1556 aa26.09■■□□□ 1.77
SHKBP1-225ENST00000600733 PUS7Q96PZ0 661 aaKnown RBP26.08■■□□□ 1.77
SHKBP1-225ENST00000600733 TNNQ9UQP3 1299 aa26.08■■□□□ 1.77
SHKBP1-225ENST00000600733 U2AF1L5P0DN76 240 aaPredicted RBP26.07■■□□□ 1.76
SHKBP1-225ENST00000600733 U2AF1Q01081 240 aaKnown RBP eCLIP26.07■■□□□ 1.76
SHKBP1-225ENST00000600733 STK26Q9P289 416 aa26.07■■□□□ 1.76
SHKBP1-225ENST00000600733 DAXXQ9UER7 740 aaPredicted RBP26.07■■□□□ 1.76
SHKBP1-225ENST00000600733 RLBP1P12271 317 aa26.07■■□□□ 1.76
SHKBP1-225ENST00000600733 NEO1Q92859 1461 aa26.06■■□□□ 1.76
SHKBP1-225ENST00000600733 NSD2O96028 1365 aa26.06■■□□□ 1.76
SHKBP1-225ENST00000600733 CCDC27Q2M243 656 aa26.05■■□□□ 1.76
SHKBP1-225ENST00000600733 A0A1W2PP64 1363 aa26.03■■□□□ 1.76
SHKBP1-225ENST00000600733 VIRMAQ69YN4 1812 aaKnown RBP26.03■■□□□ 1.76
SHKBP1-225ENST00000600733 MYO5BQ9ULV0 1848 aa26.02■■□□□ 1.76
SHKBP1-225ENST00000600733 SRPK2P78362 688 aaKnown RBP26.02■■□□□ 1.76
SHKBP1-225ENST00000600733 ARHGAP31Q2M1Z3 1444 aa26.02■■□□□ 1.76
SHKBP1-225ENST00000600733 PCDHB15Q9Y5E8 787 aa26■■□□□ 1.75
SHKBP1-225ENST00000600733 MAPK8IP3Q9UPT6 1336 aa25.99■■□□□ 1.75
SHKBP1-225ENST00000600733 GGNBP2Q9H3C7 697 aa25.99■■□□□ 1.75
SHKBP1-225ENST00000600733 YEATS2Q9ULM3 1422 aa25.99■■□□□ 1.75
SHKBP1-225ENST00000600733 ABCC11Q96J66 1382 aa25.99■■□□□ 1.75
SHKBP1-225ENST00000600733 NFKBIBQ15653 356 aa25.99■■□□□ 1.75
SHKBP1-225ENST00000600733 MYH16Q9H6N6 1097 aa25.99■■□□□ 1.75
SHKBP1-225ENST00000600733 ADGRB2O60241 1585 aa25.98■■□□□ 1.75
SHKBP1-225ENST00000600733 RICTORQ6R327 1708 aa25.98■■□□□ 1.75
SHKBP1-225ENST00000600733 SLC52A1Q9NWF4 448 aa25.97■■□□□ 1.75
SHKBP1-225ENST00000600733 ZFYVE9O95405 1425 aa25.97■■□□□ 1.75
SHKBP1-225ENST00000600733 USP19O94966 1318 aa25.97■■□□□ 1.75
SHKBP1-225ENST00000600733 U2SURPO15042 1029 aaKnown RBP25.96■■□□□ 1.75
SHKBP1-225ENST00000600733 SEC24BO95487 1268 aa25.96■■□□□ 1.75
SHKBP1-225ENST00000600733 PMFBP1Q8TBY8 1022 aa25.96■■□□□ 1.75
SHKBP1-225ENST00000600733 MINK1Q8N4C8 1332 aaPredicted RBP25.96■■□□□ 1.75
SHKBP1-225ENST00000600733 TSR2Q969E8 191 aaKnown RBP25.95■■□□□ 1.74
SHKBP1-225ENST00000600733 PTPRMP28827 1452 aa25.94■■□□□ 1.74
SHKBP1-225ENST00000600733 PRAM1Q96QH2 718 aa25.94■■□□□ 1.74
SHKBP1-225ENST00000600733 TMEM131LA2VDJ0 1609 aa25.93■■□□□ 1.74
SHKBP1-225ENST00000600733 AAMPQ13685 434 aa25.93■■□□□ 1.74
SHKBP1-225ENST00000600733 NCBP3Q53F19 620 aaKnown RBP25.93■■□□□ 1.74
SHKBP1-225ENST00000600733 PREX1Q8TCU6 1659 aa25.92■■□□□ 1.74
SHKBP1-225ENST00000600733 PLEKHF1Q96S99 279 aa25.92■■□□□ 1.74
SHKBP1-225ENST00000600733 FYB1O15117 783 aa25.91■■□□□ 1.74
SHKBP1-225ENST00000600733 COL3A1P02461 1466 aaPredicted RBP25.9■■□□□ 1.74
SHKBP1-225ENST00000600733 POGKQ9P215 609 aa25.9■■□□□ 1.74
SHKBP1-225ENST00000600733 CD163L1Q9NR16 1453 aa25.89■■□□□ 1.74
SHKBP1-225ENST00000600733 TMPOP42166 694 aaKnown RBP25.89■■□□□ 1.74
SHKBP1-225ENST00000600733 PDZRN3Q9UPQ7 1066 aa25.89■■□□□ 1.73
SHKBP1-225ENST00000600733 ATAD2Q6PL18 1390 aa25.89■■□□□ 1.73
SHKBP1-225ENST00000600733 YTHDC2Q9H6S0 1430 aaKnown RBP25.88■■□□□ 1.73
SHKBP1-225ENST00000600733 MVPQ14764 893 aaKnown RBP25.88■■□□□ 1.73
SHKBP1-225ENST00000600733 FBXO31Q5XUX0 539 aaPredicted RBP25.88■■□□□ 1.73
SHKBP1-225ENST00000600733 TERF2IPQ9NYB0 399 aa25.88■■□□□ 1.73
SHKBP1-225ENST00000600733 TRIM35Q9UPQ4 493 aa25.88■■□□□ 1.73
SHKBP1-225ENST00000600733 EXOSC9Q06265 439 aaKnown RBP25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms