RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 POGKQ9P215 609 aa27.54■■■□□ 2
UPF1-209ENST00000600310 CADPS2Q86UW7 1296 aa27.51■■□□□ 1.99
UPF1-209ENST00000600310 CARD11Q9BXL7 1154 aa27.51■■□□□ 1.99
UPF1-209ENST00000600310 DCCP43146 1447 aa27.5■■□□□ 1.99
UPF1-209ENST00000600310 ATF3P18847 181 aa27.49■■□□□ 1.99
UPF1-209ENST00000600310 SAFB2Q14151 953 aaKnown RBP eCLIP27.49■■□□□ 1.99
UPF1-209ENST00000600310 ILDR2Q71H61 639 aa27.48■■□□□ 1.99
UPF1-209ENST00000600310 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.47■■□□□ 1.99
UPF1-209ENST00000600310 NALCNQ8IZF0 1738 aa27.47■■□□□ 1.99
UPF1-209ENST00000600310 ARHGEF28Q8N1W1 1705 aaKnown RBP27.47■■□□□ 1.99
UPF1-209ENST00000600310 CENPJQ9HC77 1338 aaPredicted RBP27.43■■□□□ 1.98
UPF1-209ENST00000600310 SLAIN2Q9P270 581 aa27.43■■□□□ 1.98
UPF1-209ENST00000600310 EIF3AQ14152 1382 aaKnown RBP27.42■■□□□ 1.98
UPF1-209ENST00000600310 CDC42BPGQ6DT37 1551 aa27.41■■□□□ 1.98
UPF1-209ENST00000600310 MINK1Q8N4C8 1332 aaPredicted RBP27.41■■□□□ 1.98
UPF1-209ENST00000600310 PIP4K2BP78356 416 aa27.39■■□□□ 1.98
UPF1-209ENST00000600310 MST1RQ04912 1400 aa27.39■■□□□ 1.97
UPF1-209ENST00000600310 HIRIP3Q9BW71 556 aaPredicted RBP27.38■■□□□ 1.97
UPF1-209ENST00000600310 ADGRB2O60241 1585 aa27.37■■□□□ 1.97
UPF1-209ENST00000600310 SCAF1Q9H7N4 1312 aaKnown RBP27.35■■□□□ 1.97
UPF1-209ENST00000600310 WASLO00401 505 aaPredicted RBP27.34■■□□□ 1.97
UPF1-209ENST00000600310 SOCS7O14512 581 aa27.34■■□□□ 1.97
UPF1-209ENST00000600310 C1orf167Q5SNV9 1468 aa27.33■■□□□ 1.97
UPF1-209ENST00000600310 USP47Q96K76 1375 aa27.32■■□□□ 1.96
UPF1-209ENST00000600310 SBNO2Q9Y2G9 1366 aa27.3■■□□□ 1.96
UPF1-209ENST00000600310 ST20-MTHFSA0A0A6YYL1 179 aa27.29■■□□□ 1.96
UPF1-209ENST00000600310 NUTM2FA1L443 756 aa27.29■■□□□ 1.96
UPF1-209ENST00000600310 BRINP3Q76B58 766 aa27.29■■□□□ 1.96
UPF1-209ENST00000600310 QRICH2Q9H0J4 1663 aa27.29■■□□□ 1.96
UPF1-209ENST00000600310 FMN2Q9NZ56 1722 aa27.28■■□□□ 1.96
UPF1-209ENST00000600310 CDK19Q9BWU1 502 aa27.28■■□□□ 1.96
UPF1-209ENST00000600310 HSPA1LP34931 641 aa27.27■■□□□ 1.96
UPF1-209ENST00000600310 ANKARQ7Z5J8 1434 aa27.26■■□□□ 1.95
UPF1-209ENST00000600310 ORAI2Q96SN7 254 aa27.26■■□□□ 1.95
UPF1-209ENST00000600310 ROBO1Q9Y6N7 1651 aa27.24■■□□□ 1.95
UPF1-209ENST00000600310 EVC2Q86UK5 1308 aa27.24■■□□□ 1.95
UPF1-209ENST00000600310 ESCO1Q5FWF5 840 aa27.24■■□□□ 1.95
UPF1-209ENST00000600310 TESK2Q96S53 571 aa27.24■■□□□ 1.95
UPF1-209ENST00000600310 TULP4Q9NRJ4 1543 aa27.24■■□□□ 1.95
UPF1-209ENST00000600310 PRR36Q9H6K5 1346 aa27.23■■□□□ 1.95
UPF1-209ENST00000600310 SLC24A1O60721 1099 aa27.22■■□□□ 1.95
UPF1-209ENST00000600310 EIF4G2P78344 907 aaKnown RBP eCLIP27.21■■□□□ 1.95
UPF1-209ENST00000600310 NUDT16Q96DE0 195 aaKnown RBP27.21■■□□□ 1.95
UPF1-209ENST00000600310 SRPK2P78362 688 aaKnown RBP27.2■■□□□ 1.94
UPF1-209ENST00000600310 CABP2Q9NPB3 220 aa27.19■■□□□ 1.94
UPF1-209ENST00000600310 USP32Q8NFA0 1604 aa27.19■■□□□ 1.94
UPF1-209ENST00000600310 ATP7BP35670 1465 aa27.18■■□□□ 1.94
UPF1-209ENST00000600310 PHF8Q9UPP1 1060 aa27.17■■□□□ 1.94
UPF1-209ENST00000600310 CCDC61Q9Y6R9 512 aa27.17■■□□□ 1.94
UPF1-209ENST00000600310 HSPA5P11021 654 aaKnown RBP27.16■■□□□ 1.94
UPF1-209ENST00000600310 ZEB1P37275 1124 aaPredicted RBP27.15■■□□□ 1.94
UPF1-209ENST00000600310 AHDC1Q5TGY3 1603 aaPredicted RBP27.13■■□□□ 1.93
UPF1-209ENST00000600310 PUS7Q96PZ0 661 aaKnown RBP27.13■■□□□ 1.93
UPF1-209ENST00000600310 FOXO3O43524 673 aa27.12■■□□□ 1.93
UPF1-209ENST00000600310 TMF1P82094 1093 aa27.12■■□□□ 1.93
UPF1-209ENST00000600310 DDX17Q92841 729 aaKnown RBP27.12■■□□□ 1.93
UPF1-209ENST00000600310 NPHP3Q7Z494 1330 aa27.12■■□□□ 1.93
UPF1-209ENST00000600310 RGPD8O14715 1765 aaPredicted RBP27.12■■□□□ 1.93
UPF1-209ENST00000600310 PMFBP1Q8TBY8 1022 aa27.11■■□□□ 1.93
UPF1-209ENST00000600310 ATAD2Q6PL18 1390 aa27.1■■□□□ 1.93
UPF1-209ENST00000600310 PLEKHG3A1L390 1219 aa27.1■■□□□ 1.93
UPF1-209ENST00000600310 KIF1AQ12756 1690 aa27.1■■□□□ 1.93
UPF1-209ENST00000600310 SOS2Q07890 1332 aaPredicted RBP27.09■■□□□ 1.93
UPF1-209ENST00000600310 MED1Q15648 1581 aaPredicted RBP27.09■■□□□ 1.93
UPF1-209ENST00000600310 NHSL1Q5SYE7 1610 aa27.08■■□□□ 1.93
UPF1-209ENST00000600310 PPIP5K1Q6PFW1 1433 aa27.07■■□□□ 1.92
UPF1-209ENST00000600310 TOPAZ1Q8N9V7 1692 aa27.05■■□□□ 1.92
UPF1-209ENST00000600310 PHLPP1O60346 1717 aa27.05■■□□□ 1.92
UPF1-209ENST00000600310 ITSN1Q15811 1721 aa27.05■■□□□ 1.92
UPF1-209ENST00000600310 CDCA8Q53HL2 280 aa27.05■■□□□ 1.92
UPF1-209ENST00000600310 NGDNQ8NEJ9 315 aaKnown RBP27.05■■□□□ 1.92
UPF1-209ENST00000600310 CABP1Q9NZU7 370 aa27.05■■□□□ 1.92
UPF1-209ENST00000600310 COL16A1Q07092 1604 aaPredicted RBP27.04■■□□□ 1.92
UPF1-209ENST00000600310 POLR3AO14802 1390 aaPredicted RBP27.03■■□□□ 1.92
UPF1-209ENST00000600310 ACEP12821 1306 aa27.03■■□□□ 1.92
UPF1-209ENST00000600310 XPCQ01831 940 aaPredicted RBP27.03■■□□□ 1.92
UPF1-209ENST00000600310 PSME1Q06323 249 aa27.03■■□□□ 1.92
UPF1-209ENST00000600310 KRT28Q7Z3Y7 464 aa27.03■■□□□ 1.92
UPF1-209ENST00000600310 PXDNQ92626 1479 aa27.02■■□□□ 1.92
UPF1-209ENST00000600310 LRRC59Q96AG4 307 aaKnown RBP27.02■■□□□ 1.92
UPF1-209ENST00000600310 JCADQ9P266 1359 aa26.97■■□□□ 1.91
UPF1-209ENST00000600310 TMC1Q8TDI8 760 aa26.97■■□□□ 1.91
UPF1-209ENST00000600310 SLC12A5Q9H2X9 1139 aa26.97■■□□□ 1.91
UPF1-209ENST00000600310 SBNO1A3KN83 1393 aa26.97■■□□□ 1.91
UPF1-209ENST00000600310 NINLQ9Y2I6 1382 aa26.97■■□□□ 1.91
UPF1-209ENST00000600310 SPATA31A3Q5VYP0 1347 aa26.94■■□□□ 1.9
UPF1-209ENST00000600310 ZNF692Q9BU19 519 aaPredicted RBP26.94■■□□□ 1.9
UPF1-209ENST00000600310 CPSF1Q10570 1443 aaKnown RBP26.93■■□□□ 1.9
UPF1-209ENST00000600310 C11orf95C9JLR9 678 aaPredicted RBP26.93■■□□□ 1.9
UPF1-209ENST00000600310 PHF23Q9BUL5 403 aaPredicted RBP26.92■■□□□ 1.9
UPF1-209ENST00000600310 BRD4O60885 1362 aaPredicted RBP26.91■■□□□ 1.9
UPF1-209ENST00000600310 PNPLA6Q8IY17 1366 aa26.91■■□□□ 1.9
UPF1-209ENST00000600310 USP6P35125 1406 aa26.9■■□□□ 1.9
UPF1-209ENST00000600310 TNS3Q68CZ2 1445 aa26.9■■□□□ 1.9
UPF1-209ENST00000600310 CD163L1Q9NR16 1453 aa26.89■■□□□ 1.9
UPF1-209ENST00000600310 TERF2IPQ9NYB0 399 aa26.89■■□□□ 1.9
UPF1-209ENST00000600310 HDGFL2Q7Z4V5 671 aaPredicted RBP26.88■■□□□ 1.89
UPF1-209ENST00000600310 TRPM3Q9HCF6 1732 aaPredicted RBP26.87■■□□□ 1.89
UPF1-209ENST00000600310 PAK3O75914 559 aaPredicted RBP26.87■■□□□ 1.89
UPF1-209ENST00000600310 SSH2Q76I76 1423 aa26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms