RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 ABCC11Q96J66 1382 aa16.87■□□□□ 0.29
HIF3A-217ENST00000600236 RXRBP28702 533 aa16.86■□□□□ 0.29
HIF3A-217ENST00000600236 ESCO1Q5FWF5 840 aa16.86■□□□□ 0.29
HIF3A-217ENST00000600236 AFF2P51816 1311 aa16.86■□□□□ 0.29
HIF3A-217ENST00000600236 NPHP3Q7Z494 1330 aa16.86■□□□□ 0.29
HIF3A-217ENST00000600236 TMEM132EQ6IEE7 984 aa16.85■□□□□ 0.29
HIF3A-217ENST00000600236 WAPLQ7Z5K2 1190 aa16.84■□□□□ 0.29
HIF3A-217ENST00000600236 C8orf37Q96NL8 207 aa16.84■□□□□ 0.29
HIF3A-217ENST00000600236 YTHDC2Q9H6S0 1430 aaKnown RBP16.84■□□□□ 0.29
HIF3A-217ENST00000600236 IFT172Q9UG01 1749 aa16.84■□□□□ 0.29
HIF3A-217ENST00000600236 LAMC1P11047 1609 aa16.83■□□□□ 0.28
HIF3A-217ENST00000600236 MYOM2P54296 1465 aa16.83■□□□□ 0.28
HIF3A-217ENST00000600236 C14orf93Q9H972 538 aaKnown RBP16.83■□□□□ 0.28
HIF3A-217ENST00000600236 DHX57Q6P158 1386 aaKnown RBP16.82■□□□□ 0.28
HIF3A-217ENST00000600236 SIRT1Q96EB6 747 aa16.82■□□□□ 0.28
HIF3A-217ENST00000600236 ADAMTS2O95450 1211 aa16.81■□□□□ 0.28
HIF3A-217ENST00000600236 NGLY1Q96IV0 654 aa16.81■□□□□ 0.28
HIF3A-217ENST00000600236 KNDC1Q76NI1 1749 aa16.81■□□□□ 0.28
HIF3A-217ENST00000600236 CDK12Q9NYV4 1490 aaPredicted RBP16.8■□□□□ 0.28
HIF3A-217ENST00000600236 NRXN1Q9ULB1 1477 aa16.8■□□□□ 0.28
HIF3A-217ENST00000600236 PLEKHH1Q9ULM0 1364 aa16.79■□□□□ 0.28
HIF3A-217ENST00000600236 CFAP70Q5T0N1 1121 aa16.79■□□□□ 0.28
HIF3A-217ENST00000600236 NUTM2FA1L443 756 aa16.78■□□□□ 0.28
HIF3A-217ENST00000600236 FOXO3O43524 673 aa16.78■□□□□ 0.28
HIF3A-217ENST00000600236 HRCP23327 699 aa16.78■□□□□ 0.28
HIF3A-217ENST00000600236 RBM6P78332 1123 aaKnown RBP16.78■□□□□ 0.28
HIF3A-217ENST00000600236 QTRT2Q9H974 415 aaKnown RBP16.78■□□□□ 0.28
HIF3A-217ENST00000600236 STAC3Q96MF2 364 aa16.76■□□□□ 0.27
HIF3A-217ENST00000600236 PXDNQ92626 1479 aa16.75■□□□□ 0.27
HIF3A-217ENST00000600236 POGKQ9P215 609 aa16.75■□□□□ 0.27
HIF3A-217ENST00000600236 USP21Q9UK80 565 aa16.75■□□□□ 0.27
HIF3A-217ENST00000600236 XPCQ01831 940 aaPredicted RBP16.74■□□□□ 0.27
HIF3A-217ENST00000600236 PRAM1Q96QH2 718 aa16.74■□□□□ 0.27
HIF3A-217ENST00000600236 TRPC5Q9UL62 973 aaPredicted RBP16.73■□□□□ 0.27
HIF3A-217ENST00000600236 COL22A1Q8NFW1 1626 aaPredicted RBP16.73■□□□□ 0.27
HIF3A-217ENST00000600236 DLC1Q96QB1 1528 aa16.72■□□□□ 0.27
HIF3A-217ENST00000600236 FNBP4Q8N3X1 1017 aaPredicted RBP16.72■□□□□ 0.27
HIF3A-217ENST00000600236 DCAF11Q8TEB1 546 aa16.72■□□□□ 0.27
HIF3A-217ENST00000600236 UPF1Q92900 1129 aaKnown RBP eCLIP16.72■□□□□ 0.27
HIF3A-217ENST00000600236 FMN2Q9NZ56 1722 aa16.72■□□□□ 0.27
HIF3A-217ENST00000600236 KIF1AQ12756 1690 aa16.72■□□□□ 0.27
HIF3A-217ENST00000600236 PSME1Q06323 249 aa16.71■□□□□ 0.27
HIF3A-217ENST00000600236 SAFB2Q14151 953 aaKnown RBP eCLIP16.71■□□□□ 0.27
HIF3A-217ENST00000600236 PHF8Q9UPP1 1060 aa16.71■□□□□ 0.27
HIF3A-217ENST00000600236 KDM2AQ9Y2K7 1162 aa16.71■□□□□ 0.27
HIF3A-217ENST00000600236 RGS12O14924 1447 aa16.7■□□□□ 0.26
HIF3A-217ENST00000600236 KRT28Q7Z3Y7 464 aa16.7■□□□□ 0.26
HIF3A-217ENST00000600236 SPATA31A3Q5VYP0 1347 aa16.7■□□□□ 0.26
HIF3A-217ENST00000600236 EIF3AQ14152 1382 aaKnown RBP16.69■□□□□ 0.26
HIF3A-217ENST00000600236 HAP1P54257 671 aaPredicted RBP16.68■□□□□ 0.26
HIF3A-217ENST00000600236 TRAK1Q9UPV9 953 aa16.68■□□□□ 0.26
HIF3A-217ENST00000600236 ANKARQ7Z5J8 1434 aa16.68■□□□□ 0.26
HIF3A-217ENST00000600236 ADGRB1O14514 1584 aa16.67■□□□□ 0.26
HIF3A-217ENST00000600236 ATRNO75882 1429 aa16.66■□□□□ 0.26
HIF3A-217ENST00000600236 TNS3Q68CZ2 1445 aa16.66■□□□□ 0.26
HIF3A-217ENST00000600236 SBNO1A3KN83 1393 aa16.64■□□□□ 0.26
HIF3A-217ENST00000600236 ADGRB2O60241 1585 aa16.64■□□□□ 0.25
HIF3A-217ENST00000600236 ARHGEF10O15013 1369 aa16.64■□□□□ 0.25
HIF3A-217ENST00000600236 ATAD2Q6PL18 1390 aa16.64■□□□□ 0.25
HIF3A-217ENST00000600236 LMOD2Q6P5Q4 547 aa16.63■□□□□ 0.25
HIF3A-217ENST00000600236 HIRIP3Q9BW71 556 aaPredicted RBP16.63■□□□□ 0.25
HIF3A-217ENST00000600236 MINK1Q8N4C8 1332 aaPredicted RBP16.63■□□□□ 0.25
HIF3A-217ENST00000600236 BCL9LQ86UU0 1499 aa16.62■□□□□ 0.25
HIF3A-217ENST00000600236 PMFBP1Q8TBY8 1022 aa16.62■□□□□ 0.25
HIF3A-217ENST00000600236 GPRASP1Q5JY77 1395 aa16.62■□□□□ 0.25
HIF3A-217ENST00000600236 WASLO00401 505 aaPredicted RBP16.61■□□□□ 0.25
HIF3A-217ENST00000600236 UNC5CLQ8IV45 518 aa16.61■□□□□ 0.25
HIF3A-217ENST00000600236 GJD4Q96KN9 370 aaPredicted RBP16.6■□□□□ 0.25
HIF3A-217ENST00000600236 TULP4Q9NRJ4 1543 aa16.6■□□□□ 0.25
HIF3A-217ENST00000600236 SLIT2O94813 1529 aa16.59■□□□□ 0.25
HIF3A-217ENST00000600236 USP32Q8NFA0 1604 aa16.59■□□□□ 0.25
HIF3A-217ENST00000600236 MARF1Q9Y4F3 1742 aaKnown RBP16.57■□□□□ 0.24
HIF3A-217ENST00000600236 PLEKHG5O94827 1062 aa16.57■□□□□ 0.24
HIF3A-217ENST00000600236 NGDNQ8NEJ9 315 aaKnown RBP16.57■□□□□ 0.24
HIF3A-217ENST00000600236 CABLES1Q8TDN4 633 aa16.57■□□□□ 0.24
HIF3A-217ENST00000600236 PRR36Q9H6K5 1346 aa16.55■□□□□ 0.24
HIF3A-217ENST00000600236 RGPD8O14715 1765 aaPredicted RBP16.54■□□□□ 0.24
HIF3A-217ENST00000600236 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.54■□□□□ 0.24
HIF3A-217ENST00000600236 CCDC9Q9Y3X0 531 aaKnown RBP16.54■□□□□ 0.24
HIF3A-217ENST00000600236 RALGAPBQ86X10 1494 aa16.54■□□□□ 0.24
HIF3A-217ENST00000600236 VPS72Q15906 364 aa16.53■□□□□ 0.24
HIF3A-217ENST00000600236 CCDC125Q86Z20 511 aa16.53■□□□□ 0.24
HIF3A-217ENST00000600236 PAK3O75914 559 aaPredicted RBP16.52■□□□□ 0.24
HIF3A-217ENST00000600236 NUDT16Q96DE0 195 aaKnown RBP16.52■□□□□ 0.24
HIF3A-217ENST00000600236 ARHGEF28Q8N1W1 1705 aaKnown RBP16.5■□□□□ 0.23
HIF3A-217ENST00000600236 ATP7BP35670 1465 aa16.5■□□□□ 0.23
HIF3A-217ENST00000600236 CDK19Q9BWU1 502 aa16.5■□□□□ 0.23
HIF3A-217ENST00000600236 KIAA1210Q9ULL0 1709 aa16.49■□□□□ 0.23
HIF3A-217ENST00000600236 TRPM3Q9HCF6 1732 aaPredicted RBP16.48■□□□□ 0.23
HIF3A-217ENST00000600236 GLI3P10071 1580 aa16.48■□□□□ 0.23
HIF3A-217ENST00000600236 FAM83GA6ND36 823 aa16.48■□□□□ 0.23
HIF3A-217ENST00000600236 SEPT12Q8IYM1 358 aa16.48■□□□□ 0.23
HIF3A-217ENST00000600236 CCDC61Q9Y6R9 512 aa16.48■□□□□ 0.23
HIF3A-217ENST00000600236 ABCA3Q99758 1704 aa16.48■□□□□ 0.23
HIF3A-217ENST00000600236 NWD2Q9ULI1 1742 aa16.48■□□□□ 0.23
HIF3A-217ENST00000600236 BTG4Q9NY30 223 aa16.47■□□□□ 0.23
HIF3A-217ENST00000600236 ITSN1Q15811 1721 aa16.47■□□□□ 0.23
HIF3A-217ENST00000600236 PLCH1Q4KWH8 1693 aa16.46■□□□□ 0.23
HIF3A-217ENST00000600236 CENPJQ9HC77 1338 aaPredicted RBP16.46■□□□□ 0.23
HIF3A-217ENST00000600236 A0A0G2JS52 829 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms