RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 XIRP1Q702N8 1843 aaKnown RBP23.47■■□□□ 1.35
SHKBP1-219ENST00000599575 PLEKHH1Q9ULM0 1364 aa23.45■■□□□ 1.34
SHKBP1-219ENST00000599575 CENPJQ9HC77 1338 aaPredicted RBP23.45■■□□□ 1.34
SHKBP1-219ENST00000599575 UBAP1LF5GYI3 381 aa23.45■■□□□ 1.34
SHKBP1-219ENST00000599575 SLC24A1O60721 1099 aa23.45■■□□□ 1.34
SHKBP1-219ENST00000599575 FBXO41Q8TF61 875 aa23.44■■□□□ 1.34
SHKBP1-219ENST00000599575 CDC42BPGQ6DT37 1551 aa23.43■■□□□ 1.34
SHKBP1-219ENST00000599575 ARHGEF28Q8N1W1 1705 aaKnown RBP23.42■■□□□ 1.34
SHKBP1-219ENST00000599575 SLAIN2Q9P270 581 aa23.41■■□□□ 1.34
SHKBP1-219ENST00000599575 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.41■■□□□ 1.34
SHKBP1-219ENST00000599575 SBNO2Q9Y2G9 1366 aa23.4■■□□□ 1.34
SHKBP1-219ENST00000599575 NALCNQ8IZF0 1738 aa23.4■■□□□ 1.34
SHKBP1-219ENST00000599575 ADGRB2O60241 1585 aa23.4■■□□□ 1.34
SHKBP1-219ENST00000599575 SAFB2Q14151 953 aaKnown RBP eCLIP23.38■■□□□ 1.33
SHKBP1-219ENST00000599575 ZEB1P37275 1124 aaPredicted RBP23.36■■□□□ 1.33
SHKBP1-219ENST00000599575 MST1RQ04912 1400 aa23.35■■□□□ 1.33
SHKBP1-219ENST00000599575 WASLO00401 505 aaPredicted RBP23.35■■□□□ 1.33
SHKBP1-219ENST00000599575 MINK1Q8N4C8 1332 aaPredicted RBP23.34■■□□□ 1.33
SHKBP1-219ENST00000599575 USP47Q96K76 1375 aa23.34■■□□□ 1.33
SHKBP1-219ENST00000599575 ANKARQ7Z5J8 1434 aa23.33■■□□□ 1.33
SHKBP1-219ENST00000599575 C1orf167Q5SNV9 1468 aa23.31■■□□□ 1.32
SHKBP1-219ENST00000599575 EVC2Q86UK5 1308 aa23.31■■□□□ 1.32
SHKBP1-219ENST00000599575 HIRIP3Q9BW71 556 aaPredicted RBP23.3■■□□□ 1.32
SHKBP1-219ENST00000599575 ST20-MTHFSA0A0A6YYL1 179 aa23.29■■□□□ 1.32
SHKBP1-219ENST00000599575 EIF4G2P78344 907 aaKnown RBP eCLIP23.29■■□□□ 1.32
SHKBP1-219ENST00000599575 PIP4K2BP78356 416 aa23.29■■□□□ 1.32
SHKBP1-219ENST00000599575 PUS7Q96PZ0 661 aaKnown RBP23.28■■□□□ 1.32
SHKBP1-219ENST00000599575 QRICH2Q9H0J4 1663 aa23.28■■□□□ 1.32
SHKBP1-219ENST00000599575 TULP4Q9NRJ4 1543 aa23.28■■□□□ 1.32
SHKBP1-219ENST00000599575 CDK19Q9BWU1 502 aa23.27■■□□□ 1.32
SHKBP1-219ENST00000599575 FMN2Q9NZ56 1722 aa23.27■■□□□ 1.32
SHKBP1-219ENST00000599575 BRINP3Q76B58 766 aa23.26■■□□□ 1.31
SHKBP1-219ENST00000599575 TESK2Q96S53 571 aa23.26■■□□□ 1.31
SHKBP1-219ENST00000599575 SCAF1Q9H7N4 1312 aaKnown RBP23.26■■□□□ 1.31
SHKBP1-219ENST00000599575 SRPK2P78362 688 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-219ENST00000599575 ESCO1Q5FWF5 840 aa23.23■■□□□ 1.31
SHKBP1-219ENST00000599575 CCDC61Q9Y6R9 512 aa23.23■■□□□ 1.31
SHKBP1-219ENST00000599575 CDCA8Q53HL2 280 aa23.22■■□□□ 1.31
SHKBP1-219ENST00000599575 NUDT16Q96DE0 195 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-219ENST00000599575 TMF1P82094 1093 aa23.21■■□□□ 1.31
SHKBP1-219ENST00000599575 ATAD2Q6PL18 1390 aa23.21■■□□□ 1.31
SHKBP1-219ENST00000599575 ROBO1Q9Y6N7 1651 aa23.21■■□□□ 1.31
SHKBP1-219ENST00000599575 ATP7BP35670 1465 aa23.2■■□□□ 1.3
SHKBP1-219ENST00000599575 ORAI2Q96SN7 254 aa23.2■■□□□ 1.3
SHKBP1-219ENST00000599575 NPHP3Q7Z494 1330 aa23.19■■□□□ 1.3
SHKBP1-219ENST00000599575 PHF8Q9UPP1 1060 aa23.19■■□□□ 1.3
SHKBP1-219ENST00000599575 PRR36Q9H6K5 1346 aa23.18■■□□□ 1.3
SHKBP1-219ENST00000599575 NUTM2FA1L443 756 aa23.18■■□□□ 1.3
SHKBP1-219ENST00000599575 HSPA5P11021 654 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-219ENST00000599575 AHDC1Q5TGY3 1603 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-219ENST00000599575 KIF1AQ12756 1690 aa23.16■■□□□ 1.3
SHKBP1-219ENST00000599575 PLEKHG3A1L390 1219 aa23.16■■□□□ 1.3
SHKBP1-219ENST00000599575 CABP2Q9NPB3 220 aa23.16■■□□□ 1.3
SHKBP1-219ENST00000599575 USP32Q8NFA0 1604 aa23.15■■□□□ 1.3
SHKBP1-219ENST00000599575 NINLQ9Y2I6 1382 aa23.14■■□□□ 1.29
SHKBP1-219ENST00000599575 ILDR1Q86SU0 546 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-219ENST00000599575 ITSN1Q15811 1721 aa23.13■■□□□ 1.29
SHKBP1-219ENST00000599575 SOS2Q07890 1332 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-219ENST00000599575 PPIP5K1Q6PFW1 1433 aa23.11■■□□□ 1.29
SHKBP1-219ENST00000599575 FOXO3O43524 673 aa23.11■■□□□ 1.29
SHKBP1-219ENST00000599575 HSPA1LP34931 641 aa23.11■■□□□ 1.29
SHKBP1-219ENST00000599575 PSME1Q06323 249 aa23.11■■□□□ 1.29
SHKBP1-219ENST00000599575 POLR3AO14802 1390 aaPredicted RBP23.11■■□□□ 1.29
SHKBP1-219ENST00000599575 NHSL1Q5SYE7 1610 aa23.11■■□□□ 1.29
SHKBP1-219ENST00000599575 NGDNQ8NEJ9 315 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-219ENST00000599575 LRRC59Q96AG4 307 aaKnown RBP23.1■■□□□ 1.29
SHKBP1-219ENST00000599575 BRD4O60885 1362 aaPredicted RBP23.1■■□□□ 1.29
SHKBP1-219ENST00000599575 TOPAZ1Q8N9V7 1692 aa23.09■■□□□ 1.29
SHKBP1-219ENST00000599575 PMFBP1Q8TBY8 1022 aa23.08■■□□□ 1.29
SHKBP1-219ENST00000599575 ZNF692Q9BU19 519 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-219ENST00000599575 CABP1Q9NZU7 370 aa23.08■■□□□ 1.29
SHKBP1-219ENST00000599575 DISP3Q9P2K9 1392 aa23.08■■□□□ 1.29
SHKBP1-219ENST00000599575 ACEP12821 1306 aa23.06■■□□□ 1.28
SHKBP1-219ENST00000599575 PXDNQ92626 1479 aa23.05■■□□□ 1.28
SHKBP1-219ENST00000599575 SBNO1A3KN83 1393 aa23.05■■□□□ 1.28
SHKBP1-219ENST00000599575 KRT28Q7Z3Y7 464 aa23.05■■□□□ 1.28
SHKBP1-219ENST00000599575 PHLPP1O60346 1717 aa23.05■■□□□ 1.28
SHKBP1-219ENST00000599575 COL16A1Q07092 1604 aaPredicted RBP23.04■■□□□ 1.28
SHKBP1-219ENST00000599575 RGPD8O14715 1765 aaPredicted RBP23.04■■□□□ 1.28
SHKBP1-219ENST00000599575 JCADQ9P266 1359 aa23.03■■□□□ 1.28
SHKBP1-219ENST00000599575 TERF2IPQ9NYB0 399 aa23.03■■□□□ 1.28
SHKBP1-219ENST00000599575 CPSF1Q10570 1443 aaKnown RBP23.01■■□□□ 1.27
SHKBP1-219ENST00000599575 TMC1Q8TDI8 760 aa23.01■■□□□ 1.27
SHKBP1-219ENST00000599575 DDX17Q92841 729 aaKnown RBP23.01■■□□□ 1.27
SHKBP1-219ENST00000599575 HDGFL2Q7Z4V5 671 aaPredicted RBP23■■□□□ 1.27
SHKBP1-219ENST00000599575 SPATA31A3Q5VYP0 1347 aa23■■□□□ 1.27
SHKBP1-219ENST00000599575 ARHGEF10O15013 1369 aa22.99■■□□□ 1.27
SHKBP1-219ENST00000599575 SLC12A5Q9H2X9 1139 aa22.98■■□□□ 1.27
SHKBP1-219ENST00000599575 TNS3Q68CZ2 1445 aa22.98■■□□□ 1.27
SHKBP1-219ENST00000599575 SPATA31A6Q5VVP1 1343 aa22.97■■□□□ 1.27
SHKBP1-219ENST00000599575 USP6P35125 1406 aa22.97■■□□□ 1.27
SHKBP1-219ENST00000599575 ANKRD36BQ8N2N9 1353 aa22.96■■□□□ 1.27
SHKBP1-219ENST00000599575 XPCQ01831 940 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-219ENST00000599575 KTN1Q86UP2 1357 aaKnown RBP22.95■■□□□ 1.26
SHKBP1-219ENST00000599575 PNPLA6Q8IY17 1366 aa22.94■■□□□ 1.26
SHKBP1-219ENST00000599575 TTC21AQ8NDW8 1320 aa22.94■■□□□ 1.26
SHKBP1-219ENST00000599575 CD163L1Q9NR16 1453 aa22.93■■□□□ 1.26
SHKBP1-219ENST00000599575 SSH2Q76I76 1423 aa22.93■■□□□ 1.26
SHKBP1-219ENST00000599575 SHPRHQ149N8 1683 aa22.92■■□□□ 1.26
SHKBP1-219ENST00000599575 EDC4Q6P2E9 1401 aaKnown RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms