RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 LAMC1P11047 1609 aa14.45□□□□□ -0.1
VRK3-216ENST00000599342 TMEM132EQ6IEE7 984 aa14.45□□□□□ -0.1
VRK3-216ENST00000599342 KNDC1Q76NI1 1749 aa14.45□□□□□ -0.1
VRK3-216ENST00000599342 ABCC11Q96J66 1382 aa14.45□□□□□ -0.1
VRK3-216ENST00000599342 MYOM2P54296 1465 aa14.44□□□□□ -0.1
VRK3-216ENST00000599342 ESCO1Q5FWF5 840 aa14.44□□□□□ -0.1
VRK3-216ENST00000599342 AFF2P51816 1311 aa14.43□□□□□ -0.1
VRK3-216ENST00000599342 SOS2Q07890 1332 aaPredicted RBP14.43□□□□□ -0.1
VRK3-216ENST00000599342 YTHDC2Q9H6S0 1430 aaKnown RBP14.43□□□□□ -0.1
VRK3-216ENST00000599342 WAPLQ7Z5K2 1190 aa14.43□□□□□ -0.1
VRK3-216ENST00000599342 C8orf37Q96NL8 207 aa14.43□□□□□ -0.1
VRK3-216ENST00000599342 NPHP3Q7Z494 1330 aa14.42□□□□□ -0.1
VRK3-216ENST00000599342 RXRBP28702 533 aa14.42□□□□□ -0.1
VRK3-216ENST00000599342 C14orf93Q9H972 538 aaKnown RBP14.42□□□□□ -0.1
VRK3-216ENST00000599342 NRXN1Q9ULB1 1477 aa14.42□□□□□ -0.1
VRK3-216ENST00000599342 DHX57Q6P158 1386 aaKnown RBP14.41□□□□□ -0.1
VRK3-216ENST00000599342 PLEKHH1Q9ULM0 1364 aa14.41□□□□□ -0.1
VRK3-216ENST00000599342 NUTM2FA1L443 756 aa14.4□□□□□ -0.1
VRK3-216ENST00000599342 ADAMTS2O95450 1211 aa14.4□□□□□ -0.1
VRK3-216ENST00000599342 CFAP70Q5T0N1 1121 aa14.39□□□□□ -0.11
VRK3-216ENST00000599342 FOXO3O43524 673 aa14.38□□□□□ -0.11
VRK3-216ENST00000599342 SIRT1Q96EB6 747 aa14.38□□□□□ -0.11
VRK3-216ENST00000599342 NGLY1Q96IV0 654 aa14.38□□□□□ -0.11
VRK3-216ENST00000599342 CDK12Q9NYV4 1490 aaPredicted RBP14.38□□□□□ -0.11
VRK3-216ENST00000599342 FMN2Q9NZ56 1722 aa14.37□□□□□ -0.11
VRK3-216ENST00000599342 PXDNQ92626 1479 aa14.37□□□□□ -0.11
VRK3-216ENST00000599342 HRCP23327 699 aa14.36□□□□□ -0.11
VRK3-216ENST00000599342 XPCQ01831 940 aaPredicted RBP14.36□□□□□ -0.11
VRK3-216ENST00000599342 QTRT2Q9H974 415 aaKnown RBP14.36□□□□□ -0.11
VRK3-216ENST00000599342 COL22A1Q8NFW1 1626 aaPredicted RBP14.36□□□□□ -0.11
VRK3-216ENST00000599342 KIF1AQ12756 1690 aa14.36□□□□□ -0.11
VRK3-216ENST00000599342 SAFB2Q14151 953 aaKnown RBP eCLIP14.35□□□□□ -0.11
VRK3-216ENST00000599342 PRAM1Q96QH2 718 aa14.35□□□□□ -0.11
VRK3-216ENST00000599342 RBM6P78332 1123 aaKnown RBP14.34□□□□□ -0.11
VRK3-216ENST00000599342 DCAF11Q8TEB1 546 aa14.34□□□□□ -0.11
VRK3-216ENST00000599342 POGKQ9P215 609 aa14.34□□□□□ -0.11
VRK3-216ENST00000599342 USP21Q9UK80 565 aa14.34□□□□□ -0.11
VRK3-216ENST00000599342 KDM2AQ9Y2K7 1162 aa14.34□□□□□ -0.11
VRK3-216ENST00000599342 DLC1Q96QB1 1528 aa14.34□□□□□ -0.11
VRK3-216ENST00000599342 STAC3Q96MF2 364 aa14.32□□□□□ -0.12
VRK3-216ENST00000599342 RGS12O14924 1447 aa14.32□□□□□ -0.12
VRK3-216ENST00000599342 ADGRB1O14514 1584 aa14.31□□□□□ -0.12
VRK3-216ENST00000599342 UPF1Q92900 1129 aaKnown RBP eCLIP14.31□□□□□ -0.12
VRK3-216ENST00000599342 TRPC5Q9UL62 973 aaPredicted RBP14.31□□□□□ -0.12
VRK3-216ENST00000599342 PHF8Q9UPP1 1060 aa14.31□□□□□ -0.12
VRK3-216ENST00000599342 TRAK1Q9UPV9 953 aa14.31□□□□□ -0.12
VRK3-216ENST00000599342 PSME1Q06323 249 aa14.3□□□□□ -0.12
VRK3-216ENST00000599342 KRT28Q7Z3Y7 464 aa14.3□□□□□ -0.12
VRK3-216ENST00000599342 FNBP4Q8N3X1 1017 aaPredicted RBP14.3□□□□□ -0.12
VRK3-216ENST00000599342 SPATA31A3Q5VYP0 1347 aa14.3□□□□□ -0.12
VRK3-216ENST00000599342 ANKARQ7Z5J8 1434 aa14.29□□□□□ -0.12
VRK3-216ENST00000599342 ADGRB2O60241 1585 aa14.29□□□□□ -0.12
VRK3-216ENST00000599342 HAP1P54257 671 aaPredicted RBP14.28□□□□□ -0.12
VRK3-216ENST00000599342 EIF3AQ14152 1382 aaKnown RBP14.28□□□□□ -0.12
VRK3-216ENST00000599342 TNS3Q68CZ2 1445 aa14.28□□□□□ -0.12
VRK3-216ENST00000599342 MARF1Q9Y4F3 1742 aaKnown RBP14.27□□□□□ -0.12
VRK3-216ENST00000599342 MINK1Q8N4C8 1332 aaPredicted RBP14.27□□□□□ -0.12
VRK3-216ENST00000599342 HIRIP3Q9BW71 556 aaPredicted RBP14.27□□□□□ -0.13
VRK3-216ENST00000599342 RGPD8O14715 1765 aaPredicted RBP14.27□□□□□ -0.13
VRK3-216ENST00000599342 ATRNO75882 1429 aa14.26□□□□□ -0.13
VRK3-216ENST00000599342 SBNO1A3KN83 1393 aa14.25□□□□□ -0.13
VRK3-216ENST00000599342 ARHGEF10O15013 1369 aa14.25□□□□□ -0.13
VRK3-216ENST00000599342 LMOD2Q6P5Q4 547 aa14.25□□□□□ -0.13
VRK3-216ENST00000599342 PMFBP1Q8TBY8 1022 aa14.25□□□□□ -0.13
VRK3-216ENST00000599342 BCL9LQ86UU0 1499 aa14.25□□□□□ -0.13
VRK3-216ENST00000599342 USP32Q8NFA0 1604 aa14.24□□□□□ -0.13
VRK3-216ENST00000599342 TULP4Q9NRJ4 1543 aa14.24□□□□□ -0.13
VRK3-216ENST00000599342 ATAD2Q6PL18 1390 aa14.23□□□□□ -0.13
VRK3-216ENST00000599342 WASLO00401 505 aaPredicted RBP14.23□□□□□ -0.13
VRK3-216ENST00000599342 PLEKHG5O94827 1062 aa14.23□□□□□ -0.13
VRK3-216ENST00000599342 GPRASP1Q5JY77 1395 aa14.22□□□□□ -0.13
VRK3-216ENST00000599342 ARHGEF28Q8N1W1 1705 aaKnown RBP14.21□□□□□ -0.13
VRK3-216ENST00000599342 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.21□□□□□ -0.13
VRK3-216ENST00000599342 SLIT2O94813 1529 aa14.21□□□□□ -0.13
VRK3-216ENST00000599342 UNC5CLQ8IV45 518 aa14.21□□□□□ -0.13
VRK3-216ENST00000599342 CABLES1Q8TDN4 633 aa14.21□□□□□ -0.13
VRK3-216ENST00000599342 GJD4Q96KN9 370 aaPredicted RBP14.21□□□□□ -0.13
VRK3-216ENST00000599342 PRR36Q9H6K5 1346 aa14.2□□□□□ -0.14
VRK3-216ENST00000599342 NGDNQ8NEJ9 315 aaKnown RBP14.19□□□□□ -0.14
VRK3-216ENST00000599342 ABCA3Q99758 1704 aa14.18□□□□□ -0.14
VRK3-216ENST00000599342 KIAA1210Q9ULL0 1709 aa14.18□□□□□ -0.14
VRK3-216ENST00000599342 TRPM3Q9HCF6 1732 aaPredicted RBP14.18□□□□□ -0.14
VRK3-216ENST00000599342 RALGAPBQ86X10 1494 aa14.18□□□□□ -0.14
VRK3-216ENST00000599342 CCDC9Q9Y3X0 531 aaKnown RBP14.17□□□□□ -0.14
VRK3-216ENST00000599342 ITSN1Q15811 1721 aa14.17□□□□□ -0.14
VRK3-216ENST00000599342 ATP7BP35670 1465 aa14.17□□□□□ -0.14
VRK3-216ENST00000599342 PAK3O75914 559 aaPredicted RBP14.16□□□□□ -0.14
VRK3-216ENST00000599342 NUDT16Q96DE0 195 aaKnown RBP14.16□□□□□ -0.14
VRK3-216ENST00000599342 PLCH1Q4KWH8 1693 aa14.16□□□□□ -0.14
VRK3-216ENST00000599342 ALS2Q96Q42 1657 aa14.15□□□□□ -0.14
VRK3-216ENST00000599342 GLI3P10071 1580 aa14.15□□□□□ -0.14
VRK3-216ENST00000599342 NWD2Q9ULI1 1742 aa14.15□□□□□ -0.14
VRK3-216ENST00000599342 VPS72Q15906 364 aa14.14□□□□□ -0.15
VRK3-216ENST00000599342 CDK19Q9BWU1 502 aa14.14□□□□□ -0.15
VRK3-216ENST00000599342 NBPF1Q3BBV0 1214 aa14.13□□□□□ -0.15
VRK3-216ENST00000599342 FAM83GA6ND36 823 aa14.12□□□□□ -0.15
VRK3-216ENST00000599342 CCDC125Q86Z20 511 aa14.12□□□□□ -0.15
VRK3-216ENST00000599342 CCDC61Q9Y6R9 512 aa14.12□□□□□ -0.15
VRK3-216ENST00000599342 BTG4Q9NY30 223 aa14.11□□□□□ -0.15
VRK3-216ENST00000599342 COL14A1Q05707 1796 aaKnown RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms