RNA–Protein interactions for RNA: ENST00000599339.1

EBI3-202, Transcript of Epstein-Barr virus induced 3, humanhuman

TSL 2

Gene EBI3, Length 369 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EBI3-202ENST00000599339 IFT172Q9UG01 1749 aa21.7■■□□□ 1.06
EBI3-202ENST00000599339 STK26Q9P289 416 aa21.69■■□□□ 1.06
EBI3-202ENST00000599339 LRPPRCP42704 1394 aaKnown RBP21.69■■□□□ 1.06
EBI3-202ENST00000599339 TECPR2O15040 1411 aa21.69■■□□□ 1.06
EBI3-202ENST00000599339 ESCO1Q5FWF5 840 aa21.68■■□□□ 1.06
EBI3-202ENST00000599339 NPHP3Q7Z494 1330 aa21.68■■□□□ 1.06
EBI3-202ENST00000599339 ADAMTS2O95450 1211 aa21.67■■□□□ 1.06
EBI3-202ENST00000599339 NGLY1Q96IV0 654 aa21.67■■□□□ 1.06
EBI3-202ENST00000599339 PIK3C2GO75747 1445 aa21.66■■□□□ 1.06
EBI3-202ENST00000599339 ABCC11Q96J66 1382 aa21.66■■□□□ 1.06
EBI3-202ENST00000599339 QTRT2Q9H974 415 aaKnown RBP21.66■■□□□ 1.06
EBI3-202ENST00000599339 RBM6P78332 1123 aaKnown RBP21.65■■□□□ 1.06
EBI3-202ENST00000599339 UPF1Q92900 1129 aaKnown RBP eCLIP21.65■■□□□ 1.06
EBI3-202ENST00000599339 KNDC1Q76NI1 1749 aa21.65■■□□□ 1.06
EBI3-202ENST00000599339 WAPLQ7Z5K2 1190 aa21.64■■□□□ 1.05
EBI3-202ENST00000599339 TMEM132EQ6IEE7 984 aa21.63■■□□□ 1.05
EBI3-202ENST00000599339 YTHDC2Q9H6S0 1430 aaKnown RBP21.62■■□□□ 1.05
EBI3-202ENST00000599339 COL22A1Q8NFW1 1626 aaPredicted RBP21.62■■□□□ 1.05
EBI3-202ENST00000599339 FOXO3O43524 673 aa21.6■■□□□ 1.05
EBI3-202ENST00000599339 SIRT1Q96EB6 747 aa21.59■■□□□ 1.05
EBI3-202ENST00000599339 C14orf93Q9H972 538 aaKnown RBP21.59■■□□□ 1.05
EBI3-202ENST00000599339 USP21Q9UK80 565 aa21.59■■□□□ 1.05
EBI3-202ENST00000599339 PXDNQ92626 1479 aa21.58■■□□□ 1.05
EBI3-202ENST00000599339 RGS12O14924 1447 aa21.58■■□□□ 1.05
EBI3-202ENST00000599339 NUTM2FA1L443 756 aa21.58■■□□□ 1.05
EBI3-202ENST00000599339 DHX57Q6P158 1386 aaKnown RBP21.58■■□□□ 1.04
EBI3-202ENST00000599339 PLEKHH1Q9ULM0 1364 aa21.58■■□□□ 1.04
EBI3-202ENST00000599339 MYOM2P54296 1465 aa21.58■■□□□ 1.04
EBI3-202ENST00000599339 TRPC5Q9UL62 973 aaPredicted RBP21.57■■□□□ 1.04
EBI3-202ENST00000599339 FMN2Q9NZ56 1722 aa21.56■■□□□ 1.04
EBI3-202ENST00000599339 FNBP4Q8N3X1 1017 aaPredicted RBP21.56■■□□□ 1.04
EBI3-202ENST00000599339 RAB3GAP2Q9H2M9 1393 aa21.56■■□□□ 1.04
EBI3-202ENST00000599339 NRXN1Q9ULB1 1477 aa21.56■■□□□ 1.04
EBI3-202ENST00000599339 XPCQ01831 940 aaPredicted RBP21.55■■□□□ 1.04
EBI3-202ENST00000599339 KIF1AQ12756 1690 aa21.55■■□□□ 1.04
EBI3-202ENST00000599339 CFAP70Q5T0N1 1121 aa21.53■■□□□ 1.04
EBI3-202ENST00000599339 ATRNO75882 1429 aa21.5■■□□□ 1.03
EBI3-202ENST00000599339 MARF1Q9Y4F3 1742 aaKnown RBP21.49■■□□□ 1.03
EBI3-202ENST00000599339 SPATA31A3Q5VYP0 1347 aa21.49■■□□□ 1.03
EBI3-202ENST00000599339 ATAD2Q6PL18 1390 aa21.48■■□□□ 1.03
EBI3-202ENST00000599339 KRT28Q7Z3Y7 464 aa21.48■■□□□ 1.03
EBI3-202ENST00000599339 PRAM1Q96QH2 718 aa21.48■■□□□ 1.03
EBI3-202ENST00000599339 POGKQ9P215 609 aa21.48■■□□□ 1.03
EBI3-202ENST00000599339 PHF8Q9UPP1 1060 aa21.48■■□□□ 1.03
EBI3-202ENST00000599339 DLC1Q96QB1 1528 aa21.47■■□□□ 1.03
EBI3-202ENST00000599339 PSME1Q06323 249 aa21.47■■□□□ 1.03
EBI3-202ENST00000599339 SAFB2Q14151 953 aaKnown RBP eCLIP21.46■■□□□ 1.03
EBI3-202ENST00000599339 BCL9LQ86UU0 1499 aa21.45■■□□□ 1.02
EBI3-202ENST00000599339 HAP1P54257 671 aaPredicted RBP21.44■■□□□ 1.02
EBI3-202ENST00000599339 STAC3Q96MF2 364 aa21.44■■□□□ 1.02
EBI3-202ENST00000599339 TNS3Q68CZ2 1445 aa21.43■■□□□ 1.02
EBI3-202ENST00000599339 RGPD8O14715 1765 aaPredicted RBP21.43■■□□□ 1.02
EBI3-202ENST00000599339 HRCP23327 699 aa21.42■■□□□ 1.02
EBI3-202ENST00000599339 ANKARQ7Z5J8 1434 aa21.42■■□□□ 1.02
EBI3-202ENST00000599339 SBNO1A3KN83 1393 aa21.41■■□□□ 1.02
EBI3-202ENST00000599339 GJD4Q96KN9 370 aaPredicted RBP21.41■■□□□ 1.02
EBI3-202ENST00000599339 KDM2AQ9Y2K7 1162 aa21.41■■□□□ 1.02
EBI3-202ENST00000599339 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.41■■□□□ 1.02
EBI3-202ENST00000599339 ADGRB1O14514 1584 aa21.4■■□□□ 1.02
EBI3-202ENST00000599339 ADGRB2O60241 1585 aa21.4■■□□□ 1.02
EBI3-202ENST00000599339 EIF3AQ14152 1382 aaKnown RBP21.4■■□□□ 1.02
EBI3-202ENST00000599339 UNC5CLQ8IV45 518 aa21.4■■□□□ 1.02
EBI3-202ENST00000599339 DCAF11Q8TEB1 546 aa21.4■■□□□ 1.02
EBI3-202ENST00000599339 USP32Q8NFA0 1604 aa21.4■■□□□ 1.02
EBI3-202ENST00000599339 ARHGEF10O15013 1369 aa21.39■■□□□ 1.02
EBI3-202ENST00000599339 TRAK1Q9UPV9 953 aa21.39■■□□□ 1.01
EBI3-202ENST00000599339 SLIT2O94813 1529 aa21.39■■□□□ 1.01
EBI3-202ENST00000599339 LMOD2Q6P5Q4 547 aa21.38■■□□□ 1.01
EBI3-202ENST00000599339 PMFBP1Q8TBY8 1022 aa21.36■■□□□ 1.01
EBI3-202ENST00000599339 MINK1Q8N4C8 1332 aaPredicted RBP21.34■■□□□ 1.01
EBI3-202ENST00000599339 CCDC125Q86Z20 511 aa21.34■■□□□ 1.01
EBI3-202ENST00000599339 HIRIP3Q9BW71 556 aaPredicted RBP21.34■■□□□ 1.01
EBI3-202ENST00000599339 GPRASP1Q5JY77 1395 aa21.34■■□□□ 1.01
EBI3-202ENST00000599339 RALGAPBQ86X10 1494 aa21.33■■□□□ 1.01
EBI3-202ENST00000599339 PLEKHG5O94827 1062 aa21.33■■□□□ 1.01
EBI3-202ENST00000599339 CABLES1Q8TDN4 633 aa21.33■■□□□ 1.01
EBI3-202ENST00000599339 TULP4Q9NRJ4 1543 aa21.32■■□□□ 1
EBI3-202ENST00000599339 WASLO00401 505 aaPredicted RBP21.31■■□□□ 1
EBI3-202ENST00000599339 GLI3P10071 1580 aa21.31■■□□□ 1
EBI3-202ENST00000599339 ABCA3Q99758 1704 aa21.3■■□□□ 1
EBI3-202ENST00000599339 NWD2Q9ULI1 1742 aa21.3■■□□□ 1
EBI3-202ENST00000599339 VPS72Q15906 364 aa21.29■■□□□ 1
EBI3-202ENST00000599339 CCDC9Q9Y3X0 531 aaKnown RBP21.29■■□□□ 1
EBI3-202ENST00000599339 PLCH1Q4KWH8 1693 aa21.28■■□□□ 1
EBI3-202ENST00000599339 PRR36Q9H6K5 1346 aa21.28■■□□□ 1
EBI3-202ENST00000599339 TRPM3Q9HCF6 1732 aaPredicted RBP21.27■■□□□ 1
EBI3-202ENST00000599339 NGDNQ8NEJ9 315 aaKnown RBP21.27■■□□□ 1
EBI3-202ENST00000599339 SEPT12Q8IYM1 358 aa21.25■□□□□ 0.99
EBI3-202ENST00000599339 ARHGEF28Q8N1W1 1705 aaKnown RBP21.25■□□□□ 0.99
EBI3-202ENST00000599339 ZRANB1Q9UGI0 708 aa21.25■□□□□ 0.99
EBI3-202ENST00000599339 EP400Q96L91 3159 aa21.25■□□□□ 0.99
EBI3-202ENST00000599339 ALS2Q96Q42 1657 aa21.24■□□□□ 0.99
EBI3-202ENST00000599339 ITSN1Q15811 1721 aa21.24■□□□□ 0.99
EBI3-202ENST00000599339 FAM83GA6ND36 823 aa21.23■□□□□ 0.99
EBI3-202ENST00000599339 BLMP54132 1417 aaPredicted RBP21.22■□□□□ 0.99
EBI3-202ENST00000599339 PAK3O75914 559 aaPredicted RBP21.22■□□□□ 0.99
EBI3-202ENST00000599339 ONECUT3O60422 494 aaPredicted RBP21.21■□□□□ 0.99
EBI3-202ENST00000599339 NUDT16Q96DE0 195 aaKnown RBP21.21■□□□□ 0.99
EBI3-202ENST00000599339 ATP7BP35670 1465 aa21.2■□□□□ 0.98
EBI3-202ENST00000599339 BRWD3Q6RI45 1802 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms