RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 BRWD3Q6RI45 1802 aa17.72■□□□□ 0.43
SHKBP1-213ENST00000597325 MYOM2P54296 1465 aa17.72■□□□□ 0.43
SHKBP1-213ENST00000597325 UTRNP46939 3433 aa17.72■□□□□ 0.43
SHKBP1-213ENST00000597325 GLI3P10071 1580 aa17.71■□□□□ 0.43
SHKBP1-213ENST00000597325 IFFO2Q5TF58 517 aa17.71■□□□□ 0.43
SHKBP1-213ENST00000597325 IQGAP3Q86VI3 1631 aa17.71■□□□□ 0.43
SHKBP1-213ENST00000597325 ADGRL3Q9HAR2 1447 aa17.71■□□□□ 0.43
SHKBP1-213ENST00000597325 C1orf167Q5SNV9 1468 aa17.7■□□□□ 0.42
SHKBP1-213ENST00000597325 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-213ENST00000597325 MARF1Q9Y4F3 1742 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-213ENST00000597325 NUP155O75694 1391 aa17.7■□□□□ 0.42
SHKBP1-213ENST00000597325 NALCNQ8IZF0 1738 aa17.69■□□□□ 0.42
SHKBP1-213ENST00000597325 SF3B2Q13435 895 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-213ENST00000597325 NRXN3Q9Y4C0 1643 aa17.68■□□□□ 0.42
SHKBP1-213ENST00000597325 RALGAPBQ86X10 1494 aa17.68■□□□□ 0.42
SHKBP1-213ENST00000597325 DHX57Q6P158 1386 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-213ENST00000597325 CCER1Q8TC90 406 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-213ENST00000597325 CEP350Q5VT06 3117 aa17.64■□□□□ 0.41
SHKBP1-213ENST00000597325 SLC4A1APQ9BWU0 796 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-213ENST00000597325 ORAI2Q96SN7 254 aa17.63■□□□□ 0.41
SHKBP1-213ENST00000597325 SLIT2O94813 1529 aa17.62■□□□□ 0.41
SHKBP1-213ENST00000597325 MPHOSPH9Q99550 1183 aa17.62■□□□□ 0.41
SHKBP1-213ENST00000597325 UNC5CLQ8IV45 518 aa17.61■□□□□ 0.41
SHKBP1-213ENST00000597325 METP08581 1390 aa17.61■□□□□ 0.41
SHKBP1-213ENST00000597325 CHGAP10645 457 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-213ENST00000597325 BAG6P46379 1132 aa17.59■□□□□ 0.41
SHKBP1-213ENST00000597325 SEPT12Q8IYM1 358 aa17.59■□□□□ 0.41
SHKBP1-213ENST00000597325 ONECUT3O60422 494 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-213ENST00000597325 R3HDM1Q15032 1099 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-213ENST00000597325 CLSPNQ9HAW4 1339 aa17.56■□□□□ 0.4
SHKBP1-213ENST00000597325 E9PCH4 1651 aa17.56■□□□□ 0.4
SHKBP1-213ENST00000597325 PXDNQ92626 1479 aa17.56■□□□□ 0.4
SHKBP1-213ENST00000597325 KRT27Q7Z3Y8 459 aa17.55■□□□□ 0.4
SHKBP1-213ENST00000597325 EN1Q05925 392 aaPredicted RBP17.53■□□□□ 0.4
SHKBP1-213ENST00000597325 NPHP3Q7Z494 1330 aa17.5■□□□□ 0.39
SHKBP1-213ENST00000597325 DISP2A7MBM2 1401 aa17.5■□□□□ 0.39
SHKBP1-213ENST00000597325 VPS72Q15906 364 aa17.5■□□□□ 0.39
SHKBP1-213ENST00000597325 RGPD1P0DJD0 1748 aa17.49■□□□□ 0.39
SHKBP1-213ENST00000597325 USP32Q8NFA0 1604 aa17.47■□□□□ 0.39
SHKBP1-213ENST00000597325 ANKRD30BQ9BXX2 1392 aa17.47■□□□□ 0.39
SHKBP1-213ENST00000597325 ROBO2Q9HCK4 1378 aa17.45■□□□□ 0.38
SHKBP1-213ENST00000597325 TNS1Q9HBL0 1735 aaKnown RBP17.45■□□□□ 0.38
SHKBP1-213ENST00000597325 SENP3-EIF4A1A0A087X0R7 540 aa17.45■□□□□ 0.38
SHKBP1-213ENST00000597325 CCDC144AA2RUR9 1427 aa17.45■□□□□ 0.38
SHKBP1-213ENST00000597325 NWD2Q9ULI1 1742 aa17.44■□□□□ 0.38
SHKBP1-213ENST00000597325 ZNF784Q8NCA9 323 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-213ENST00000597325 PRAG1Q86YV5 1406 aa17.44■□□□□ 0.38
SHKBP1-213ENST00000597325 PLCH1Q4KWH8 1693 aa17.43■□□□□ 0.38
SHKBP1-213ENST00000597325 XPCQ01831 940 aaPredicted RBP17.43■□□□□ 0.38
SHKBP1-213ENST00000597325 FOXO3O43524 673 aa17.42■□□□□ 0.38
SHKBP1-213ENST00000597325 EZH2Q15910 746 aaKnown RBP17.42■□□□□ 0.38
SHKBP1-213ENST00000597325 ESCO1Q5FWF5 840 aa17.41■□□□□ 0.38
SHKBP1-213ENST00000597325 CLTCL1P53675 1640 aa17.4■□□□□ 0.38
SHKBP1-213ENST00000597325 NEUROD1Q13562 356 aa17.4■□□□□ 0.38
SHKBP1-213ENST00000597325 CAMKK2Q96RR4 588 aa17.4■□□□□ 0.38
SHKBP1-213ENST00000597325 NINLQ9Y2I6 1382 aa17.4■□□□□ 0.38
SHKBP1-213ENST00000597325 CAMTA1Q9Y6Y1 1673 aa17.39■□□□□ 0.37
SHKBP1-213ENST00000597325 SIN3AQ96ST3 1273 aa17.39■□□□□ 0.37
SHKBP1-213ENST00000597325 SPATA31A3Q5VYP0 1347 aa17.39■□□□□ 0.37
SHKBP1-213ENST00000597325 CDC42BPGQ6DT37 1551 aa17.38■□□□□ 0.37
SHKBP1-213ENST00000597325 ZEB1P37275 1124 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-213ENST00000597325 C1QTNF8P60827 252 aa17.38■□□□□ 0.37
SHKBP1-213ENST00000597325 NEXMIFQ5QGS0 1516 aa17.37■□□□□ 0.37
SHKBP1-213ENST00000597325 FAM182BQ5T319 152 aa17.37■□□□□ 0.37
SHKBP1-213ENST00000597325 LRPPRCP42704 1394 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-213ENST00000597325 TONSLQ96HA7 1378 aa17.37■□□□□ 0.37
SHKBP1-213ENST00000597325 CCDC9Q9Y3X0 531 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-213ENST00000597325 KIF1BO60333 1816 aa17.35■□□□□ 0.37
SHKBP1-213ENST00000597325 DCAF8L1A6NGE4 600 aa17.35■□□□□ 0.37
SHKBP1-213ENST00000597325 FAM98CQ17RN3 349 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-213ENST00000597325 RREB1Q92766 1687 aa17.35■□□□□ 0.37
SHKBP1-213ENST00000597325 NRAPQ86VF7 1730 aa17.34■□□□□ 0.37
SHKBP1-213ENST00000597325 ADGRB2O60241 1585 aa17.33■□□□□ 0.37
SHKBP1-213ENST00000597325 PARD3Q8TEW0 1356 aa17.33■□□□□ 0.36
SHKBP1-213ENST00000597325 ZNF326Q5BKZ1 582 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-213ENST00000597325 NUP188Q5SRE5 1749 aa17.33■□□□□ 0.36
SHKBP1-213ENST00000597325 GOLGB1Q14789 3259 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-213ENST00000597325 A0A0G2JS52 829 aa17.32■□□□□ 0.36
SHKBP1-213ENST00000597325 MYT1Q01538 1121 aa17.32■□□□□ 0.36
SHKBP1-213ENST00000597325 ABCA3Q99758 1704 aa17.32■□□□□ 0.36
SHKBP1-213ENST00000597325 SPON1Q9HCB6 807 aa17.31■□□□□ 0.36
SHKBP1-213ENST00000597325 TIMELESSQ9UNS1 1208 aa17.31■□□□□ 0.36
SHKBP1-213ENST00000597325 THSD7AQ9UPZ6 1657 aa17.31■□□□□ 0.36
SHKBP1-213ENST00000597325 KCNQ2O43526 872 aa17.3■□□□□ 0.36
SHKBP1-213ENST00000597325 CABLES1Q8TDN4 633 aa17.3■□□□□ 0.36
SHKBP1-213ENST00000597325 PPP1R1BQ9UD71 204 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-213ENST00000597325 FAM83GA6ND36 823 aa17.29■□□□□ 0.36
SHKBP1-213ENST00000597325 TNS3Q68CZ2 1445 aa17.28■□□□□ 0.36
SHKBP1-213ENST00000597325 SPATA31E1Q6ZUB1 1445 aa17.28■□□□□ 0.36
SHKBP1-213ENST00000597325 KIF1AQ12756 1690 aa17.26■□□□□ 0.35
SHKBP1-213ENST00000597325 TRIM37O94972 964 aa17.26■□□□□ 0.35
SHKBP1-213ENST00000597325 KRT28Q7Z3Y7 464 aa17.26■□□□□ 0.35
SHKBP1-213ENST00000597325 HAP1P54257 671 aaPredicted RBP17.25■□□□□ 0.35
SHKBP1-213ENST00000597325 RGL3Q3MIN7 710 aa17.25■□□□□ 0.35
SHKBP1-213ENST00000597325 CHD4Q14839 1912 aa17.24■□□□□ 0.35
SHKBP1-213ENST00000597325 NUTM2FA1L443 756 aa17.24■□□□□ 0.35
SHKBP1-213ENST00000597325 APBA3O96018 575 aa17.24■□□□□ 0.35
SHKBP1-213ENST00000597325 L3MBTL2Q969R5 705 aa17.23■□□□□ 0.35
SHKBP1-213ENST00000597325 SPATA31A5Q5VU36 1347 aa17.22■□□□□ 0.35
SHKBP1-213ENST00000597325 SPATA31A7Q8IWB4 1347 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms