RNA–Protein interactions for RNA: ENST00000593168.5

VMP1-217, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-217ENST00000593168 ROCK2O75116 1388 aaKnown RBP18.95■□□□□ 0.62
VMP1-217ENST00000593168 XRN1Q8IZH2 1706 aaKnown RBP18.95■□□□□ 0.62
VMP1-217ENST00000593168 ADGRF5Q8IZF2 1346 aa18.95■□□□□ 0.62
VMP1-217ENST00000593168 NEXMIFQ5QGS0 1516 aa18.95■□□□□ 0.62
VMP1-217ENST00000593168 NHSL1Q5SYE7 1610 aa18.94■□□□□ 0.62
VMP1-217ENST00000593168 KIAA1210Q9ULL0 1709 aa18.94■□□□□ 0.62
VMP1-217ENST00000593168 NBPF1Q3BBV0 1214 aa18.93■□□□□ 0.62
VMP1-217ENST00000593168 ASXL1Q8IXJ9 1541 aa18.93■□□□□ 0.62
VMP1-217ENST00000593168 LAMC1P11047 1609 aa18.92■□□□□ 0.62
VMP1-217ENST00000593168 NUTM2BA6NNL0 878 aaPredicted RBP18.92■□□□□ 0.62
VMP1-217ENST00000593168 NUTM2EB1AL46 878 aaPredicted RBP18.92■□□□□ 0.62
VMP1-217ENST00000593168 NUTM2AQ8IVF1 878 aaPredicted RBP18.92■□□□□ 0.62
VMP1-217ENST00000593168 USP47Q96K76 1375 aa18.92■□□□□ 0.62
VMP1-217ENST00000593168 DCCP43146 1447 aa18.91■□□□□ 0.62
VMP1-217ENST00000593168 RXRBP28702 533 aa18.91■□□□□ 0.62
VMP1-217ENST00000593168 HIRIP3Q9BW71 556 aaPredicted RBP18.91■□□□□ 0.62
VMP1-217ENST00000593168 SETBP1Q9Y6X0 1596 aa18.9■□□□□ 0.62
VMP1-217ENST00000593168 PIK3C2GO75747 1445 aa18.9■□□□□ 0.62
VMP1-217ENST00000593168 MST1RQ04912 1400 aa18.9■□□□□ 0.62
VMP1-217ENST00000593168 C14orf93Q9H972 538 aaKnown RBP18.89■□□□□ 0.61
VMP1-217ENST00000593168 CDK12Q9NYV4 1490 aaPredicted RBP18.89■□□□□ 0.61
VMP1-217ENST00000593168 AFF2P51816 1311 aa18.88■□□□□ 0.61
VMP1-217ENST00000593168 CFAP70Q5T0N1 1121 aa18.87■□□□□ 0.61
VMP1-217ENST00000593168 NALCNQ8IZF0 1738 aa18.86■□□□□ 0.61
VMP1-217ENST00000593168 DIEXFQ68CQ4 756 aaKnown RBP18.86■□□□□ 0.61
VMP1-217ENST00000593168 METP08581 1390 aa18.85■□□□□ 0.61
VMP1-217ENST00000593168 DDX17Q92841 729 aaKnown RBP18.84■□□□□ 0.61
VMP1-217ENST00000593168 RGS12O14924 1447 aa18.83■□□□□ 0.6
VMP1-217ENST00000593168 ST20-MTHFSA0A0A6YYL1 179 aa18.82■□□□□ 0.6
VMP1-217ENST00000593168 ADGRL3Q9HAR2 1447 aa18.82■□□□□ 0.6
VMP1-217ENST00000593168 PNPLA6Q8IY17 1366 aa18.81■□□□□ 0.6
VMP1-217ENST00000593168 LRRC59Q96AG4 307 aaKnown RBP18.81■□□□□ 0.6
VMP1-217ENST00000593168 C8orf37Q96NL8 207 aa18.81■□□□□ 0.6
VMP1-217ENST00000593168 QTRT2Q9H974 415 aaKnown RBP18.79■□□□□ 0.6
VMP1-217ENST00000593168 ADGRB1O14514 1584 aa18.78■□□□□ 0.6
VMP1-217ENST00000593168 WASHC2AQ641Q2 1341 aa18.77■□□□□ 0.6
VMP1-217ENST00000593168 C11orf95C9JLR9 678 aaPredicted RBP18.77■□□□□ 0.6
VMP1-217ENST00000593168 EIF3AQ14152 1382 aaKnown RBP18.77■□□□□ 0.6
VMP1-217ENST00000593168 RBM6P78332 1123 aaKnown RBP18.76■□□□□ 0.59
VMP1-217ENST00000593168 CCDC7Q96M83 1385 aa18.76■□□□□ 0.59
VMP1-217ENST00000593168 C1orf167Q5SNV9 1468 aa18.76■□□□□ 0.59
VMP1-217ENST00000593168 SLC24A1O60721 1099 aa18.74■□□□□ 0.59
VMP1-217ENST00000593168 DDX10Q13206 875 aaKnown RBP18.74■□□□□ 0.59
VMP1-217ENST00000593168 TESK2Q96S53 571 aa18.74■□□□□ 0.59
VMP1-217ENST00000593168 KIF7Q2M1P5 1343 aa18.74■□□□□ 0.59
VMP1-217ENST00000593168 ADAMTS2O95450 1211 aa18.73■□□□□ 0.59
VMP1-217ENST00000593168 TMEM132EQ6IEE7 984 aa18.73■□□□□ 0.59
VMP1-217ENST00000593168 NGLY1Q96IV0 654 aa18.71■□□□□ 0.59
VMP1-217ENST00000593168 PTCH1Q13635 1447 aa18.7■□□□□ 0.58
VMP1-217ENST00000593168 ORAI2Q96SN7 254 aa18.7■□□□□ 0.58
VMP1-217ENST00000593168 ROBO2Q9HCK4 1378 aa18.69■□□□□ 0.58
VMP1-217ENST00000593168 TMF1P82094 1093 aa18.69■□□□□ 0.58
VMP1-217ENST00000593168 TRAK1Q9UPV9 953 aa18.69■□□□□ 0.58
VMP1-217ENST00000593168 SOS2Q07890 1332 aaPredicted RBP18.69■□□□□ 0.58
VMP1-217ENST00000593168 COL22A1Q8NFW1 1626 aaPredicted RBP18.68■□□□□ 0.58
VMP1-217ENST00000593168 SBNO2Q9Y2G9 1366 aa18.68■□□□□ 0.58
VMP1-217ENST00000593168 CENPJQ9HC77 1338 aaPredicted RBP18.67■□□□□ 0.58
VMP1-217ENST00000593168 YTHDC2Q9H6S0 1430 aaKnown RBP18.66■□□□□ 0.58
VMP1-217ENST00000593168 USP21Q9UK80 565 aa18.66■□□□□ 0.58
VMP1-217ENST00000593168 LRPPRCP42704 1394 aaKnown RBP18.65■□□□□ 0.58
VMP1-217ENST00000593168 ATAD2Q6PL18 1390 aa18.65■□□□□ 0.58
VMP1-217ENST00000593168 MARF1Q9Y4F3 1742 aaKnown RBP18.64■□□□□ 0.57
VMP1-217ENST00000593168 CDCA8Q53HL2 280 aa18.64■□□□□ 0.57
VMP1-217ENST00000593168 ABCC11Q96J66 1382 aa18.64■□□□□ 0.57
VMP1-217ENST00000593168 ATRNO75882 1429 aa18.64■□□□□ 0.57
VMP1-217ENST00000593168 FNBP4Q8N3X1 1017 aaPredicted RBP18.63■□□□□ 0.57
VMP1-217ENST00000593168 TRPC5Q9UL62 973 aaPredicted RBP18.63■□□□□ 0.57
VMP1-217ENST00000593168 SIRT1Q96EB6 747 aa18.62■□□□□ 0.57
VMP1-217ENST00000593168 STK26Q9P289 416 aa18.62■□□□□ 0.57
VMP1-217ENST00000593168 DLC1Q96QB1 1528 aa18.62■□□□□ 0.57
VMP1-217ENST00000593168 ARHGEF28Q8N1W1 1705 aaKnown RBP18.62■□□□□ 0.57
VMP1-217ENST00000593168 SRCAPQ6ZRS2 3230 aa18.61■□□□□ 0.57
VMP1-217ENST00000593168 POLR3GLQ9BT43 218 aa18.6■□□□□ 0.57
VMP1-217ENST00000593168 CDC42BPGQ6DT37 1551 aa18.59■□□□□ 0.57
VMP1-217ENST00000593168 PXDNQ92626 1479 aa18.59■□□□□ 0.57
VMP1-217ENST00000593168 MIER1Q8N108 512 aa18.59■□□□□ 0.57
VMP1-217ENST00000593168 EP400Q96L91 3159 aa18.58■□□□□ 0.57
VMP1-217ENST00000593168 BCL9LQ86UU0 1499 aa18.58■□□□□ 0.57
VMP1-217ENST00000593168 TECPR2O15040 1411 aa18.57■□□□□ 0.56
VMP1-217ENST00000593168 QRICH2Q9H0J4 1663 aa18.57■□□□□ 0.56
VMP1-217ENST00000593168 PUS7Q96PZ0 661 aaKnown RBP18.57■□□□□ 0.56
VMP1-217ENST00000593168 PRAM1Q96QH2 718 aa18.56■□□□□ 0.56
VMP1-217ENST00000593168 POGKQ9P215 609 aa18.56■□□□□ 0.56
VMP1-217ENST00000593168 KNDC1Q76NI1 1749 aa18.55■□□□□ 0.56
VMP1-217ENST00000593168 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.55■□□□□ 0.56
VMP1-217ENST00000593168 ESCO1Q5FWF5 840 aa18.55■□□□□ 0.56
VMP1-217ENST00000593168 NPHP3Q7Z494 1330 aa18.54■□□□□ 0.56
VMP1-217ENST00000593168 XPCQ01831 940 aaPredicted RBP18.54■□□□□ 0.56
VMP1-217ENST00000593168 EVC2Q86UK5 1308 aa18.53■□□□□ 0.56
VMP1-217ENST00000593168 ANP32CO43423 234 aa18.53■□□□□ 0.56
VMP1-217ENST00000593168 ZRANB1Q9UGI0 708 aa18.53■□□□□ 0.56
VMP1-217ENST00000593168 GLI3P10071 1580 aa18.51■□□□□ 0.55
VMP1-217ENST00000593168 FOXO3O43524 673 aa18.51■□□□□ 0.55
VMP1-217ENST00000593168 BRWD3Q6RI45 1802 aa18.51■□□□□ 0.55
VMP1-217ENST00000593168 FMN2Q9NZ56 1722 aa18.5■□□□□ 0.55
VMP1-217ENST00000593168 NUTM2FA1L443 756 aa18.5■□□□□ 0.55
VMP1-217ENST00000593168 GJD4Q96KN9 370 aaPredicted RBP18.5■□□□□ 0.55
VMP1-217ENST00000593168 SAFB2Q14151 953 aaKnown RBP eCLIP18.49■□□□□ 0.55
VMP1-217ENST00000593168 WAPLQ7Z5K2 1190 aa18.49■□□□□ 0.55
VMP1-217ENST00000593168 CCDC125Q86Z20 511 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms