RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 MST1RQ04912 1400 aa13.77□□□□□ -0.21
DDX39A-220ENST00000593008 BRINP3Q76B58 766 aa13.77□□□□□ -0.21
DDX39A-220ENST00000593008 PLEKHH1Q9ULM0 1364 aa13.77□□□□□ -0.21
DDX39A-220ENST00000593008 NALCNQ8IZF0 1738 aa13.76□□□□□ -0.21
DDX39A-220ENST00000593008 YTHDC2Q9H6S0 1430 aaKnown RBP13.76□□□□□ -0.21
DDX39A-220ENST00000593008 ABCC11Q96J66 1382 aa13.75□□□□□ -0.21
DDX39A-220ENST00000593008 TECPR2O15040 1411 aa13.74□□□□□ -0.21
DDX39A-220ENST00000593008 GPRASP1Q5JY77 1395 aa13.74□□□□□ -0.21
DDX39A-220ENST00000593008 SAFB2Q14151 953 aaKnown RBP eCLIP13.74□□□□□ -0.21
DDX39A-220ENST00000593008 DDX17Q92841 729 aaKnown RBP13.74□□□□□ -0.21
DDX39A-220ENST00000593008 MED1Q15648 1581 aaPredicted RBP13.74□□□□□ -0.21
DDX39A-220ENST00000593008 NUTM2FA1L443 756 aa13.73□□□□□ -0.21
DDX39A-220ENST00000593008 ARHGEF28Q8N1W1 1705 aaKnown RBP13.73□□□□□ -0.21
DDX39A-220ENST00000593008 PRAM1Q96QH2 718 aa13.72□□□□□ -0.21
DDX39A-220ENST00000593008 ORAI2Q96SN7 254 aa13.72□□□□□ -0.21
DDX39A-220ENST00000593008 HIRIP3Q9BW71 556 aaPredicted RBP13.72□□□□□ -0.21
DDX39A-220ENST00000593008 CARD11Q9BXL7 1154 aa13.72□□□□□ -0.21
DDX39A-220ENST00000593008 TRAK1Q9UPV9 953 aa13.72□□□□□ -0.21
DDX39A-220ENST00000593008 PHLPP1O60346 1717 aa13.72□□□□□ -0.21
DDX39A-220ENST00000593008 C1orf167Q5SNV9 1468 aa13.72□□□□□ -0.21
DDX39A-220ENST00000593008 KNDC1Q76NI1 1749 aa13.71□□□□□ -0.21
DDX39A-220ENST00000593008 STAC3Q96MF2 364 aa13.71□□□□□ -0.21
DDX39A-220ENST00000593008 PHF23Q9BUL5 403 aaPredicted RBP13.71□□□□□ -0.21
DDX39A-220ENST00000593008 USP47Q96K76 1375 aa13.71□□□□□ -0.22
DDX39A-220ENST00000593008 ZEB1P37275 1124 aaPredicted RBP13.7□□□□□ -0.22
DDX39A-220ENST00000593008 POGKQ9P215 609 aa13.7□□□□□ -0.22
DDX39A-220ENST00000593008 JCADQ9P266 1359 aa13.69□□□□□ -0.22
DDX39A-220ENST00000593008 COL16A1Q07092 1604 aaPredicted RBP13.68□□□□□ -0.22
DDX39A-220ENST00000593008 AHDC1Q5TGY3 1603 aaPredicted RBP13.68□□□□□ -0.22
DDX39A-220ENST00000593008 ESCO1Q5FWF5 840 aa13.68□□□□□ -0.22
DDX39A-220ENST00000593008 SIRT1Q96EB6 747 aa13.68□□□□□ -0.22
DDX39A-220ENST00000593008 CDC42BPGQ6DT37 1551 aa13.66□□□□□ -0.22
DDX39A-220ENST00000593008 QRICH2Q9H0J4 1663 aa13.66□□□□□ -0.22
DDX39A-220ENST00000593008 DLC1Q96QB1 1528 aa13.66□□□□□ -0.22
DDX39A-220ENST00000593008 HSPA5P11021 654 aaKnown RBP13.66□□□□□ -0.22
DDX39A-220ENST00000593008 MINK1Q8N4C8 1332 aaPredicted RBP13.65□□□□□ -0.22
DDX39A-220ENST00000593008 XPCQ01831 940 aaPredicted RBP13.65□□□□□ -0.22
DDX39A-220ENST00000593008 NUTM2BA6NNL0 878 aaPredicted RBP13.64□□□□□ -0.23
DDX39A-220ENST00000593008 NUTM2EB1AL46 878 aaPredicted RBP13.64□□□□□ -0.23
DDX39A-220ENST00000593008 FOXO3O43524 673 aa13.64□□□□□ -0.23
DDX39A-220ENST00000593008 NUTM2AQ8IVF1 878 aaPredicted RBP13.64□□□□□ -0.23
DDX39A-220ENST00000593008 ST20-MTHFSA0A0A6YYL1 179 aa13.63□□□□□ -0.23
DDX39A-220ENST00000593008 LRRC59Q96AG4 307 aaKnown RBP13.63□□□□□ -0.23
DDX39A-220ENST00000593008 RGS17Q9UGC6 210 aaPredicted RBP13.63□□□□□ -0.23
DDX39A-220ENST00000593008 TULP4Q9NRJ4 1543 aa13.63□□□□□ -0.23
DDX39A-220ENST00000593008 NHSL1Q5SYE7 1610 aa13.62□□□□□ -0.23
DDX39A-220ENST00000593008 MEX3CQ5U5Q3 659 aaKnown RBP13.62□□□□□ -0.23
DDX39A-220ENST00000593008 SPATA31A6Q5VVP1 1343 aa13.62□□□□□ -0.23
DDX39A-220ENST00000593008 CENPJQ9HC77 1338 aaPredicted RBP13.62□□□□□ -0.23
DDX39A-220ENST00000593008 LRP6O75581 1613 aa13.61□□□□□ -0.23
DDX39A-220ENST00000593008 TESK2Q96S53 571 aa13.61□□□□□ -0.23
DDX39A-220ENST00000593008 SOS2Q07890 1332 aaPredicted RBP13.61□□□□□ -0.23
DDX39A-220ENST00000593008 NPHP3Q7Z494 1330 aa13.6□□□□□ -0.23
DDX39A-220ENST00000593008 EIF3AQ14152 1382 aaKnown RBP13.59□□□□□ -0.23
DDX39A-220ENST00000593008 PNPLA6Q8IY17 1366 aa13.59□□□□□ -0.23
DDX39A-220ENST00000593008 FMN2Q9NZ56 1722 aa13.59□□□□□ -0.23
DDX39A-220ENST00000593008 C11orf95C9JLR9 678 aaPredicted RBP13.59□□□□□ -0.23
DDX39A-220ENST00000593008 EIF4G2P78344 907 aaKnown RBP eCLIP13.59□□□□□ -0.23
DDX39A-220ENST00000593008 WASLO00401 505 aaPredicted RBP13.58□□□□□ -0.24
DDX39A-220ENST00000593008 PMFBP1Q8TBY8 1022 aa13.58□□□□□ -0.24
DDX39A-220ENST00000593008 PHF8Q9UPP1 1060 aa13.58□□□□□ -0.24
DDX39A-220ENST00000593008 SHPRHQ149N8 1683 aa13.58□□□□□ -0.24
DDX39A-220ENST00000593008 ADGRB2O60241 1585 aa13.58□□□□□ -0.24
DDX39A-220ENST00000593008 PXDNQ92626 1479 aa13.57□□□□□ -0.24
DDX39A-220ENST00000593008 PRR36Q9H6K5 1346 aa13.57□□□□□ -0.24
DDX39A-220ENST00000593008 PLEKHG5O94827 1062 aa13.56□□□□□ -0.24
DDX39A-220ENST00000593008 ADAMTS2O95450 1211 aa13.56□□□□□ -0.24
DDX39A-220ENST00000593008 POTEAQ6S8J7 498 aa13.56□□□□□ -0.24
DDX39A-220ENST00000593008 KRT28Q7Z3Y7 464 aa13.56□□□□□ -0.24
DDX39A-220ENST00000593008 USP32Q8NFA0 1604 aa13.55□□□□□ -0.24
DDX39A-220ENST00000593008 CDK19Q9BWU1 502 aa13.55□□□□□ -0.24
DDX39A-220ENST00000593008 PSME1Q06323 249 aa13.54□□□□□ -0.24
DDX39A-220ENST00000593008 C8orf37Q96NL8 207 aa13.54□□□□□ -0.24
DDX39A-220ENST00000593008 ANKARQ7Z5J8 1434 aa13.54□□□□□ -0.24
DDX39A-220ENST00000593008 RGPD8O14715 1765 aaPredicted RBP13.53□□□□□ -0.24
DDX39A-220ENST00000593008 NUDT16Q96DE0 195 aaKnown RBP13.53□□□□□ -0.24
DDX39A-220ENST00000593008 CABP2Q9NPB3 220 aa13.53□□□□□ -0.24
DDX39A-220ENST00000593008 SBNO2Q9Y2G9 1366 aa13.53□□□□□ -0.24
DDX39A-220ENST00000593008 LMOD2Q6P5Q4 547 aa13.52□□□□□ -0.25
DDX39A-220ENST00000593008 ATP7BP35670 1465 aa13.52□□□□□ -0.25
DDX39A-220ENST00000593008 KIF1AQ12756 1690 aa13.52□□□□□ -0.25
DDX39A-220ENST00000593008 MYOM1P52179 1685 aa13.51□□□□□ -0.25
DDX39A-220ENST00000593008 AFF2P51816 1311 aa13.51□□□□□ -0.25
DDX39A-220ENST00000593008 SPATA31A3Q5VYP0 1347 aa13.51□□□□□ -0.25
DDX39A-220ENST00000593008 NGDNQ8NEJ9 315 aaKnown RBP13.51□□□□□ -0.25
DDX39A-220ENST00000593008 POLR3GLQ9BT43 218 aa13.51□□□□□ -0.25
DDX39A-220ENST00000593008 KIF7Q2M1P5 1343 aa13.5□□□□□ -0.25
DDX39A-220ENST00000593008 WASHC2AQ641Q2 1341 aa13.5□□□□□ -0.25
DDX39A-220ENST00000593008 SRPK2P78362 688 aaKnown RBP13.5□□□□□ -0.25
DDX39A-220ENST00000593008 NGLY1Q96IV0 654 aa13.5□□□□□ -0.25
DDX39A-220ENST00000593008 TOPAZ1Q8N9V7 1692 aa13.5□□□□□ -0.25
DDX39A-220ENST00000593008 ZNF772Q68DY9 489 aaPredicted RBP13.49□□□□□ -0.25
DDX39A-220ENST00000593008 CABLES1Q8TDN4 633 aa13.49□□□□□ -0.25
DDX39A-220ENST00000593008 CCDC7Q96M83 1385 aa13.48□□□□□ -0.25
DDX39A-220ENST00000593008 TNS3Q68CZ2 1445 aa13.47□□□□□ -0.25
DDX39A-220ENST00000593008 SBNO1A3KN83 1393 aa13.47□□□□□ -0.25
DDX39A-220ENST00000593008 PAK3O75914 559 aaPredicted RBP13.47□□□□□ -0.25
DDX39A-220ENST00000593008 CCDC61Q9Y6R9 512 aa13.47□□□□□ -0.25
DDX39A-220ENST00000593008 COL22A1Q8NFW1 1626 aaPredicted RBP13.46□□□□□ -0.25
DDX39A-220ENST00000593008 EVC2Q86UK5 1308 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms