RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 PPLO60437 1756 aa14.2□□□□□ -0.14
VPS4B-206ENST00000591475 KDM5AP29375 1690 aaKnown RBP14.2□□□□□ -0.14
VPS4B-206ENST00000591475 NEFMP07197 916 aa14.19□□□□□ -0.14
VPS4B-206ENST00000591475 HDGFP51858 240 aaKnown RBP14.19□□□□□ -0.14
VPS4B-206ENST00000591475 ADAMTS8Q9UP79 889 aa14.19□□□□□ -0.14
VPS4B-206ENST00000591475 LAS1LQ9Y4W2 734 aaKnown RBP14.19□□□□□ -0.14
VPS4B-206ENST00000591475 WDR43Q15061 677 aaKnown RBP eCLIP14.19□□□□□ -0.14
VPS4B-206ENST00000591475 PIK3C2GO75747 1445 aa14.19□□□□□ -0.14
VPS4B-206ENST00000591475 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.18□□□□□ -0.14
VPS4B-206ENST00000591475 KNSTRNQ9Y448 316 aa14.18□□□□□ -0.14
VPS4B-206ENST00000591475 PPP2R1AP30153 589 aa14.17□□□□□ -0.14
VPS4B-206ENST00000591475 NUTM2DQ5VT03 806 aaPredicted RBP14.17□□□□□ -0.14
VPS4B-206ENST00000591475 KDM2BQ8NHM5 1336 aa14.17□□□□□ -0.14
VPS4B-206ENST00000591475 MYO5BQ9ULV0 1848 aa14.17□□□□□ -0.14
VPS4B-206ENST00000591475 PTPRMP28827 1452 aa14.17□□□□□ -0.14
VPS4B-206ENST00000591475 CENPQQ7L2Z9 268 aaPredicted RBP14.17□□□□□ -0.14
VPS4B-206ENST00000591475 KIAA1210Q9ULL0 1709 aa14.16□□□□□ -0.14
VPS4B-206ENST00000591475 ASXL1Q8IXJ9 1541 aa14.16□□□□□ -0.14
VPS4B-206ENST00000591475 CDCA8Q53HL2 280 aa14.16□□□□□ -0.14
VPS4B-206ENST00000591475 CFAP70Q5T0N1 1121 aa14.16□□□□□ -0.14
VPS4B-206ENST00000591475 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.16□□□□□ -0.14
VPS4B-206ENST00000591475 C14orf93Q9H972 538 aaKnown RBP14.16□□□□□ -0.14
VPS4B-206ENST00000591475 RIMS2Q9UQ26 1411 aa14.16□□□□□ -0.14
VPS4B-206ENST00000591475 C20orf194Q5TEA3 1177 aa14.15□□□□□ -0.14
VPS4B-206ENST00000591475 THEMISQ8N1K5 641 aaPredicted RBP14.15□□□□□ -0.14
VPS4B-206ENST00000591475 MYOM1P52179 1685 aa14.15□□□□□ -0.14
VPS4B-206ENST00000591475 TMEM2Q9UHN6 1383 aa14.15□□□□□ -0.14
VPS4B-206ENST00000591475 PLEKHH1Q9ULM0 1364 aa14.15□□□□□ -0.14
VPS4B-206ENST00000591475 UBR1Q8IWV7 1749 aa14.15□□□□□ -0.14
VPS4B-206ENST00000591475 DUSP27Q5VZP5 1158 aa14.15□□□□□ -0.14
VPS4B-206ENST00000591475 GOLGA2Q08379 1002 aa14.14□□□□□ -0.15
VPS4B-206ENST00000591475 ZNF521Q96K83 1311 aa14.14□□□□□ -0.15
VPS4B-206ENST00000591475 MYO3AQ8NEV4 1616 aa14.14□□□□□ -0.15
VPS4B-206ENST00000591475 SCAF11Q99590 1463 aaKnown RBP14.13□□□□□ -0.15
VPS4B-206ENST00000591475 AMER1Q5JTC6 1135 aaPredicted RBP14.13□□□□□ -0.15
VPS4B-206ENST00000591475 SKAP1Q86WV1 359 aa14.13□□□□□ -0.15
VPS4B-206ENST00000591475 CEP170BQ9Y4F5 1589 aaPredicted RBP14.11□□□□□ -0.15
VPS4B-206ENST00000591475 SETD1BQ9UPS6 1966 aaKnown RBP14.11□□□□□ -0.15
VPS4B-206ENST00000591475 NPC1L1Q9UHC9 1359 aa14.11□□□□□ -0.15
VPS4B-206ENST00000591475 EID1Q9Y6B2 187 aa14.11□□□□□ -0.15
VPS4B-206ENST00000591475 SETBP1Q9Y6X0 1596 aa14.11□□□□□ -0.15
VPS4B-206ENST00000591475 EIF3AQ14152 1382 aaKnown RBP14.1□□□□□ -0.15
VPS4B-206ENST00000591475 SLFN5Q08AF3 891 aa14.1□□□□□ -0.15
VPS4B-206ENST00000591475 FAM161AQ3B820 660 aa14.1□□□□□ -0.15
VPS4B-206ENST00000591475 SLIT1O75093 1534 aa14.1□□□□□ -0.15
VPS4B-206ENST00000591475 TXNDC2Q86VQ3 553 aa14.09□□□□□ -0.15
VPS4B-206ENST00000591475 DAXXQ9UER7 740 aaPredicted RBP14.09□□□□□ -0.15
VPS4B-206ENST00000591475 ARHGAP23Q9P227 1491 aa14.09□□□□□ -0.15
VPS4B-206ENST00000591475 VIRMAQ69YN4 1812 aaKnown RBP14.09□□□□□ -0.15
VPS4B-206ENST00000591475 KDM4FA0A1W2PPD8 638 aa14.08□□□□□ -0.16
VPS4B-206ENST00000591475 ADGRB1O14514 1584 aa14.08□□□□□ -0.16
VPS4B-206ENST00000591475 LTKP29376 864 aa14.07□□□□□ -0.16
VPS4B-206ENST00000591475 TMEM132EQ6IEE7 984 aa14.07□□□□□ -0.16
VPS4B-206ENST00000591475 TRMT2AQ8IZ69 625 aaKnown RBP14.07□□□□□ -0.16
VPS4B-206ENST00000591475 ZNF142P52746 1687 aaPredicted RBP14.07□□□□□ -0.16
VPS4B-206ENST00000591475 NKTRP30414 1462 aaKnown RBP14.07□□□□□ -0.16
VPS4B-206ENST00000591475 PLEKHG1Q9ULL1 1385 aa14.06□□□□□ -0.16
VPS4B-206ENST00000591475 ALKQ9UM73 1620 aa14.06□□□□□ -0.16
VPS4B-206ENST00000591475 C8orf34Q49A92 452 aa14.06□□□□□ -0.16
VPS4B-206ENST00000591475 SLC24A1O60721 1099 aa14.05□□□□□ -0.16
VPS4B-206ENST00000591475 SENP3Q9H4L4 574 aaPredicted RBP14.05□□□□□ -0.16
VPS4B-206ENST00000591475 NFKBIBQ15653 356 aa14.03□□□□□ -0.16
VPS4B-206ENST00000591475 ANKLE2Q86XL3 938 aa14.03□□□□□ -0.16
VPS4B-206ENST00000591475 CCDC146Q8IYE0 955 aa14.03□□□□□ -0.16
VPS4B-206ENST00000591475 NGEFQ8N5V2 710 aa14.03□□□□□ -0.16
VPS4B-206ENST00000591475 TRAK1Q9UPV9 953 aa14.03□□□□□ -0.16
VPS4B-206ENST00000591475 E9PSI1 815 aa14.03□□□□□ -0.16
VPS4B-206ENST00000591475 IL27Q8NEV9 243 aa14.02□□□□□ -0.16
VPS4B-206ENST00000591475 YTHDC2Q9H6S0 1430 aaKnown RBP14.02□□□□□ -0.17
VPS4B-206ENST00000591475 APAF1O14727 1248 aa14.02□□□□□ -0.17
VPS4B-206ENST00000591475 SLC4A3P48751 1232 aa14.02□□□□□ -0.17
VPS4B-206ENST00000591475 GSE1Q14687 1217 aa14.02□□□□□ -0.17
VPS4B-206ENST00000591475 NRXN3Q9Y4C0 1643 aa14.02□□□□□ -0.17
VPS4B-206ENST00000591475 RGS3P49796 1198 aa14.01□□□□□ -0.17
VPS4B-206ENST00000591475 CENPJQ9HC77 1338 aaPredicted RBP14.01□□□□□ -0.17
VPS4B-206ENST00000591475 NINLQ9Y2I6 1382 aa14□□□□□ -0.17
VPS4B-206ENST00000591475 ADAMTS13Q76LX8 1427 aa14□□□□□ -0.17
VPS4B-206ENST00000591475 SPINK5Q9NQ38 1064 aaPredicted RBP14□□□□□ -0.17
VPS4B-206ENST00000591475 STK26Q9P289 416 aa14□□□□□ -0.17
VPS4B-206ENST00000591475 METP08581 1390 aa13.99□□□□□ -0.17
VPS4B-206ENST00000591475 SBNO2Q9Y2G9 1366 aa13.99□□□□□ -0.17
VPS4B-206ENST00000591475 TBX22Q9Y458 520 aa13.99□□□□□ -0.17
VPS4B-206ENST00000591475 SETD1AO15047 1707 aaKnown RBP13.98□□□□□ -0.17
VPS4B-206ENST00000591475 BCAR3O75815 825 aa13.98□□□□□ -0.17
VPS4B-206ENST00000591475 ABCC11Q96J66 1382 aa13.98□□□□□ -0.17
VPS4B-206ENST00000591475 MED14O60244 1454 aa13.98□□□□□ -0.17
VPS4B-206ENST00000591475 SLC26A8Q96RN1 970 aa13.98□□□□□ -0.17
VPS4B-206ENST00000591475 CGNL1Q0VF96 1302 aa13.98□□□□□ -0.17
VPS4B-206ENST00000591475 PDE3AQ14432 1141 aa13.97□□□□□ -0.17
VPS4B-206ENST00000591475 DIP2AQ14689 1571 aa13.96□□□□□ -0.17
VPS4B-206ENST00000591475 SHPRHQ149N8 1683 aa13.96□□□□□ -0.18
VPS4B-206ENST00000591475 POLR3AO14802 1390 aaPredicted RBP13.95□□□□□ -0.18
VPS4B-206ENST00000591475 POGKQ9P215 609 aa13.95□□□□□ -0.18
VPS4B-206ENST00000591475 DLC1Q96QB1 1528 aa13.95□□□□□ -0.18
VPS4B-206ENST00000591475 ARHGEF28Q8N1W1 1705 aaKnown RBP13.95□□□□□ -0.18
VPS4B-206ENST00000591475 SIRT1Q96EB6 747 aa13.95□□□□□ -0.18
VPS4B-206ENST00000591475 PRAM1Q96QH2 718 aa13.95□□□□□ -0.18
VPS4B-206ENST00000591475 MAPK8IP3Q9UPT6 1336 aa13.94□□□□□ -0.18
VPS4B-206ENST00000591475 CARD14Q9BXL6 1004 aa13.94□□□□□ -0.18
VPS4B-206ENST00000591475 TECPR2O15040 1411 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms