RNA–Protein interactions for RNA: ENST00000590347.5

CIRBP-228, Transcript of cold inducible RNA binding protein, humanhuman

TSL 2

Gene CIRBP, Length 3,117 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIRBP-228ENST00000590347 RBM42Q9BTD8 480 aaKnown RBP19.03■□□□□ 0.64
CIRBP-228ENST00000590347 EIF3AQ14152 1382 aaKnown RBP19.03■□□□□ 0.64
CIRBP-228ENST00000590347 CD2BP2O95400 341 aaKnown RBP19.03■□□□□ 0.64
CIRBP-228ENST00000590347 STAC3Q96MF2 364 aa19.03■□□□□ 0.64
CIRBP-228ENST00000590347 SPDYE4A6NLX3 237 aa19.02■□□□□ 0.64
CIRBP-228ENST00000590347 RSPH4AQ5TD94 716 aa19.02■□□□□ 0.64
CIRBP-228ENST00000590347 CAVIN1Q6NZI2 390 aaKnown RBP19.02■□□□□ 0.64
CIRBP-228ENST00000590347 DISP3Q9P2K9 1392 aa19.01■□□□□ 0.63
CIRBP-228ENST00000590347 SPAG9O60271 1321 aaKnown RBP19.01■□□□□ 0.63
CIRBP-228ENST00000590347 PPP2R1AP30153 589 aa19.01■□□□□ 0.63
CIRBP-228ENST00000590347 ADGBQ8N7X0 1667 aa19.01■□□□□ 0.63
CIRBP-228ENST00000590347 ZSCAN20P17040 1043 aaPredicted RBP19.01■□□□□ 0.63
CIRBP-228ENST00000590347 DNTTIP2Q5QJE6 756 aaKnown RBP19.01■□□□□ 0.63
CIRBP-228ENST00000590347 OSCARQ8IYS5 282 aa19■□□□□ 0.63
CIRBP-228ENST00000590347 RNF214Q8ND24 703 aa19■□□□□ 0.63
CIRBP-228ENST00000590347 SENP3Q9H4L4 574 aaPredicted RBP19■□□□□ 0.63
CIRBP-228ENST00000590347 EIF2AK3Q9NZJ5 1116 aaKnown RBP19■□□□□ 0.63
CIRBP-228ENST00000590347 SHROOM2Q13796 1616 aa19■□□□□ 0.63
CIRBP-228ENST00000590347 TPRNQ4KMQ1 711 aa19■□□□□ 0.63
CIRBP-228ENST00000590347 CROCC2H7BZ55 1655 aa19■□□□□ 0.63
CIRBP-228ENST00000590347 GBP4Q96PP9 640 aa19■□□□□ 0.63
CIRBP-228ENST00000590347 PPP4R3BQ5MIZ7 849 aa18.99■□□□□ 0.63
CIRBP-228ENST00000590347 RBM27Q9P2N5 1060 aaKnown RBP18.99■□□□□ 0.63
CIRBP-228ENST00000590347 CGNL1Q0VF96 1302 aa18.99■□□□□ 0.63
CIRBP-228ENST00000590347 DMTNQ08495 405 aa18.98■□□□□ 0.63
CIRBP-228ENST00000590347 ZNF521Q96K83 1311 aa18.98■□□□□ 0.63
CIRBP-228ENST00000590347 PPP1R9BQ96SB3 815 aa18.98■□□□□ 0.63
CIRBP-228ENST00000590347 MAP7D2Q96T17 732 aa18.98■□□□□ 0.63
CIRBP-228ENST00000590347 RBSNQ9H1K0 784 aa18.98■□□□□ 0.63
CIRBP-228ENST00000590347 FOXD4L5Q5VV16 416 aaPredicted RBP18.97■□□□□ 0.63
CIRBP-228ENST00000590347 FOXD4L4Q8WXT5 416 aaPredicted RBP18.97■□□□□ 0.63
CIRBP-228ENST00000590347 SHANK2Q9UPX8 1470 aa18.97■□□□□ 0.63
CIRBP-228ENST00000590347 KIF3BO15066 747 aa18.97■□□□□ 0.63
CIRBP-228ENST00000590347 PDIA4P13667 645 aaKnown RBP18.97■□□□□ 0.63
CIRBP-228ENST00000590347 PLCH2O75038 1416 aa18.96■□□□□ 0.63
CIRBP-228ENST00000590347 NPM1P06748 294 aaKnown RBP eCLIP18.96■□□□□ 0.63
CIRBP-228ENST00000590347 PREX2Q70Z35 1606 aa18.96■□□□□ 0.63
CIRBP-228ENST00000590347 MCTP1Q6DN14 999 aa18.96■□□□□ 0.63
CIRBP-228ENST00000590347 CCDC144AA2RUR9 1427 aa18.96■□□□□ 0.63
CIRBP-228ENST00000590347 CLASP1Q7Z460 1538 aa18.96■□□□□ 0.63
CIRBP-228ENST00000590347 C17orf53Q8N3J3 647 aaPredicted RBP18.96■□□□□ 0.63
CIRBP-228ENST00000590347 KNSTRNQ9Y448 316 aa18.95■□□□□ 0.62
CIRBP-228ENST00000590347 ZCCHC11Q5TAX3 1644 aaKnown RBP18.94■□□□□ 0.62
CIRBP-228ENST00000590347 ZNF830Q96NB3 372 aaPredicted RBP18.94■□□□□ 0.62
CIRBP-228ENST00000590347 FAM135AQ9P2D6 1515 aa18.94■□□□□ 0.62
CIRBP-228ENST00000590347 TNNT2P45379 298 aaPredicted RBP18.94■□□□□ 0.62
CIRBP-228ENST00000590347 PRIM1P49642 420 aaKnown RBP18.93■□□□□ 0.62
CIRBP-228ENST00000590347 ATP2B3Q16720 1220 aa18.93■□□□□ 0.62
CIRBP-228ENST00000590347 CCDC94Q9BW85 323 aaPredicted RBP18.92■□□□□ 0.62
CIRBP-228ENST00000590347 SCAPERQ9BY12 1400 aa18.92■□□□□ 0.62
CIRBP-228ENST00000590347 PMFBP1Q8TBY8 1022 aa18.91■□□□□ 0.62
CIRBP-228ENST00000590347 RAB3GAP1Q15042 981 aa18.91■□□□□ 0.62
CIRBP-228ENST00000590347 CGNQ9P2M7 1197 aaKnown RBP18.91■□□□□ 0.62
CIRBP-228ENST00000590347 NKTRP30414 1462 aaKnown RBP18.91■□□□□ 0.62
CIRBP-228ENST00000590347 PTMAP06454 111 aaKnown RBP18.91■□□□□ 0.62
CIRBP-228ENST00000590347 ISY1Q9ULR0 285 aaKnown RBP18.91■□□□□ 0.62
CIRBP-228ENST00000590347 GAS2L2Q8NHY3 880 aa18.9■□□□□ 0.62
CIRBP-228ENST00000590347 NOL7Q9UMY1 257 aaKnown RBP18.9■□□□□ 0.62
CIRBP-228ENST00000590347 RALGAPBQ86X10 1494 aa18.9■□□□□ 0.62
CIRBP-228ENST00000590347 ARHGEF5Q12774 1597 aa18.9■□□□□ 0.62
CIRBP-228ENST00000590347 PKP1Q13835 747 aa18.9■□□□□ 0.62
CIRBP-228ENST00000590347 RTEL1-TNFRSF6BF6WH68 1400 aa18.9■□□□□ 0.62
CIRBP-228ENST00000590347 DYNC1I1O14576 645 aa18.89■□□□□ 0.62
CIRBP-228ENST00000590347 PDE3AQ14432 1141 aa18.89■□□□□ 0.62
CIRBP-228ENST00000590347 RWDD1Q9H446 243 aaPredicted RBP18.88■□□□□ 0.61
CIRBP-228ENST00000590347 PLA2R1Q13018 1463 aa18.88■□□□□ 0.61
CIRBP-228ENST00000590347 E9PSI1 815 aa18.88■□□□□ 0.61
CIRBP-228ENST00000590347 ZSCAN23Q3MJ62 389 aa18.88■□□□□ 0.61
CIRBP-228ENST00000590347 CHGAP10645 457 aaKnown RBP18.87■□□□□ 0.61
CIRBP-228ENST00000590347 CYB5RLQ6IPT4 315 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 LNPKQ9C0E8 428 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 SKOR2Q2VWA4 1001 aaPredicted RBP18.87■□□□□ 0.61
CIRBP-228ENST00000590347 ZNF710Q8N1W2 664 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 BAG4O95429 457 aaKnown RBP18.87■□□□□ 0.61
CIRBP-228ENST00000590347 GGT6Q6P531 493 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 SASS6Q6UVJ0 657 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 PAXIP1Q6ZW49 1069 aaPredicted RBP18.87■□□□□ 0.61
CIRBP-228ENST00000590347 TESK2Q96S53 571 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 TMEM51Q9NW97 253 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 ZKSCAN5Q9Y2L8 839 aa18.87■□□□□ 0.61
CIRBP-228ENST00000590347 DDIT3P35638 169 aa18.86■□□□□ 0.61
CIRBP-228ENST00000590347 FOXD4L6Q3SYB3 417 aaPredicted RBP18.86■□□□□ 0.61
CIRBP-228ENST00000590347 FOXD4L3Q6VB84 417 aaPredicted RBP18.86■□□□□ 0.61
CIRBP-228ENST00000590347 TRMT2AQ8IZ69 625 aaKnown RBP18.86■□□□□ 0.61
CIRBP-228ENST00000590347 AK9Q5TCS8 1911 aa18.86■□□□□ 0.61
CIRBP-228ENST00000590347 ASXL2Q76L83 1435 aa18.86■□□□□ 0.61
CIRBP-228ENST00000590347 GOLGA6L22H0YM25 854 aa18.86■□□□□ 0.61
CIRBP-228ENST00000590347 MYO5CQ9NQX4 1742 aa18.86■□□□□ 0.61
CIRBP-228ENST00000590347 VIRMAQ69YN4 1812 aaKnown RBP18.85■□□□□ 0.61
CIRBP-228ENST00000590347 SYCE3A1L190 88 aa18.85■□□□□ 0.61
CIRBP-228ENST00000590347 FANCAO15360 1455 aa18.84■□□□□ 0.61
CIRBP-228ENST00000590347 ZNF500O60304 480 aaPredicted RBP18.84■□□□□ 0.61
CIRBP-228ENST00000590347 PRPF40AO75400 957 aaKnown RBP18.84■□□□□ 0.61
CIRBP-228ENST00000590347 RARSP54136 660 aaKnown RBP18.84■□□□□ 0.61
CIRBP-228ENST00000590347 RAPGEF3O95398 923 aa18.83■□□□□ 0.61
CIRBP-228ENST00000590347 WDR7Q9Y4E6 1490 aa18.83■□□□□ 0.61
CIRBP-228ENST00000590347 CHMP4AQ9BY43 222 aa18.83■□□□□ 0.6
CIRBP-228ENST00000590347 TMF1P82094 1093 aa18.83■□□□□ 0.6
CIRBP-228ENST00000590347 FTSJ3Q8IY81 847 aaKnown RBP18.83■□□□□ 0.6
CIRBP-228ENST00000590347 NSFL1CQ9UNZ2 370 aaKnown RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms