RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 DISP3Q9P2K9 1392 aa9.83□□□□□ -0.84
ZNF540-206ENST00000589117 CCDC136Q96JN2 1154 aa9.83□□□□□ -0.84
ZNF540-206ENST00000589117 GPBP1L1Q9HC44 474 aaPredicted RBP9.83□□□□□ -0.84
ZNF540-206ENST00000589117 ZMYM4Q5VZL5 1548 aa9.83□□□□□ -0.84
ZNF540-206ENST00000589117 ZMYND10O75800 440 aa9.83□□□□□ -0.84
ZNF540-206ENST00000589117 CC2D1BQ5T0F9 858 aaKnown RBP9.83□□□□□ -0.84
ZNF540-206ENST00000589117 B4GALNT3Q6L9W6 998 aa9.83□□□□□ -0.84
ZNF540-206ENST00000589117 ANP32EQ9BTT0 268 aa9.83□□□□□ -0.84
ZNF540-206ENST00000589117 TET3O43151 1660 aa9.83□□□□□ -0.84
ZNF540-206ENST00000589117 DEPDC5O75140 1603 aa9.82□□□□□ -0.84
ZNF540-206ENST00000589117 SCAF11Q99590 1463 aaKnown RBP9.82□□□□□ -0.84
ZNF540-206ENST00000589117 PDAP1Q13442 181 aaKnown RBP9.82□□□□□ -0.84
ZNF540-206ENST00000589117 ASXL2Q76L83 1435 aa9.82□□□□□ -0.84
ZNF540-206ENST00000589117 NEURL4Q96JN8 1562 aa9.82□□□□□ -0.84
ZNF540-206ENST00000589117 NCKAP5LQ9HCH0 1330 aa9.82□□□□□ -0.84
ZNF540-206ENST00000589117 FANCIQ9NVI1 1328 aa9.82□□□□□ -0.84
ZNF540-206ENST00000589117 AKT1S1Q96B36 256 aa9.81□□□□□ -0.84
ZNF540-206ENST00000589117 SPHKAPQ2M3C7 1700 aa9.81□□□□□ -0.84
ZNF540-206ENST00000589117 INO80Q9ULG1 1556 aaPredicted RBP9.81□□□□□ -0.84
ZNF540-206ENST00000589117 RNF17Q9BXT8 1623 aaKnown RBP9.81□□□□□ -0.84
ZNF540-206ENST00000589117 CHADLQ6NUI6 762 aa9.81□□□□□ -0.84
ZNF540-206ENST00000589117 ZNF518AQ6AHZ1 1483 aa9.8□□□□□ -0.84
ZNF540-206ENST00000589117 ZNF467Q7Z7K2 595 aaPredicted RBP9.8□□□□□ -0.84
ZNF540-206ENST00000589117 FBXO22Q8NEZ5 403 aa9.8□□□□□ -0.84
ZNF540-206ENST00000589117 RCAN3Q9UKA8 241 aa9.8□□□□□ -0.84
ZNF540-206ENST00000589117 CEP152O94986 1710 aa9.8□□□□□ -0.84
ZNF540-206ENST00000589117 WDR43Q15061 677 aaKnown RBP eCLIP9.79□□□□□ -0.84
ZNF540-206ENST00000589117 MADDQ8WXG6 1647 aa9.79□□□□□ -0.84
ZNF540-206ENST00000589117 VWDEQ8N2E2 1590 aa9.79□□□□□ -0.84
ZNF540-206ENST00000589117 PSEN1P49768 467 aa9.78□□□□□ -0.84
ZNF540-206ENST00000589117 PHF8Q9UPP1 1060 aa9.78□□□□□ -0.84
ZNF540-206ENST00000589117 NPC1L1Q9UHC9 1359 aa9.77□□□□□ -0.84
ZNF540-206ENST00000589117 PITPNM1O00562 1244 aa9.77□□□□□ -0.85
ZNF540-206ENST00000589117 EFCAB3Q8N7B9 438 aa9.77□□□□□ -0.85
ZNF540-206ENST00000589117 PODXL2Q9NZ53 605 aa9.77□□□□□ -0.85
ZNF540-206ENST00000589117 CFAP74Q9C0B2 1584 aa9.77□□□□□ -0.85
ZNF540-206ENST00000589117 KIAA1210Q9ULL0 1709 aa9.77□□□□□ -0.85
ZNF540-206ENST00000589117 CLTCL1P53675 1640 aa9.77□□□□□ -0.85
ZNF540-206ENST00000589117 RRP1P56182 461 aaKnown RBP9.77□□□□□ -0.85
ZNF540-206ENST00000589117 MYOM2P54296 1465 aa9.77□□□□□ -0.85
ZNF540-206ENST00000589117 CD109Q6YHK3 1445 aa9.76□□□□□ -0.85
ZNF540-206ENST00000589117 SALL2Q9Y467 1007 aaPredicted RBP9.76□□□□□ -0.85
ZNF540-206ENST00000589117 IQGAP1P46940 1657 aa9.76□□□□□ -0.85
ZNF540-206ENST00000589117 SYNMO15061 1565 aa9.75□□□□□ -0.85
ZNF540-206ENST00000589117 BLMP54132 1417 aaPredicted RBP9.75□□□□□ -0.85
ZNF540-206ENST00000589117 LMTK2Q8IWU2 1503 aa9.75□□□□□ -0.85
ZNF540-206ENST00000589117 RPGRIP1LQ68CZ1 1315 aa9.75□□□□□ -0.85
ZNF540-206ENST00000589117 PPP2R1AP30153 589 aa9.74□□□□□ -0.85
ZNF540-206ENST00000589117 EFCAB6Q5THR3 1501 aa9.74□□□□□ -0.85
ZNF540-206ENST00000589117 CFAP70Q5T0N1 1121 aa9.74□□□□□ -0.85
ZNF540-206ENST00000589117 NGEFQ8N5V2 710 aa9.74□□□□□ -0.85
ZNF540-206ENST00000589117 IL27Q8NEV9 243 aa9.74□□□□□ -0.85
ZNF540-206ENST00000589117 ASXL1Q8IXJ9 1541 aa9.74□□□□□ -0.85
ZNF540-206ENST00000589117 MLH3Q9UHC1 1453 aa9.73□□□□□ -0.85
ZNF540-206ENST00000589117 KIF1BO60333 1816 aa9.73□□□□□ -0.85
ZNF540-206ENST00000589117 MAP3K4Q9Y6R4 1608 aa9.73□□□□□ -0.85
ZNF540-206ENST00000589117 SENP3-EIF4A1A0A087X0R7 540 aa9.73□□□□□ -0.85
ZNF540-206ENST00000589117 RBM26Q5T8P6 1007 aaKnown RBP9.73□□□□□ -0.85
ZNF540-206ENST00000589117 ADAMTS8Q9UP79 889 aa9.73□□□□□ -0.85
ZNF540-206ENST00000589117 CCDC61Q9Y6R9 512 aa9.73□□□□□ -0.85
ZNF540-206ENST00000589117 PIK3C2GO75747 1445 aa9.72□□□□□ -0.85
ZNF540-206ENST00000589117 GGT6Q6P531 493 aa9.72□□□□□ -0.85
ZNF540-206ENST00000589117 LARP6Q9BRS8 491 aaKnown RBP9.72□□□□□ -0.85
ZNF540-206ENST00000589117 CABP2Q9NPB3 220 aa9.72□□□□□ -0.85
ZNF540-206ENST00000589117 SBNO2Q9Y2G9 1366 aa9.72□□□□□ -0.85
ZNF540-206ENST00000589117 POGZQ7Z3K3 1410 aa9.72□□□□□ -0.85
ZNF540-206ENST00000589117 BARGINQ6ZT62 677 aa9.72□□□□□ -0.85
ZNF540-206ENST00000589117 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.72□□□□□ -0.85
ZNF540-206ENST00000589117 ADGRF5Q8IZF2 1346 aa9.71□□□□□ -0.85
ZNF540-206ENST00000589117 KIDINS220Q9ULH0 1771 aa9.71□□□□□ -0.85
ZNF540-206ENST00000589117 MLLT3P42568 568 aaPredicted RBP9.71□□□□□ -0.85
ZNF540-206ENST00000589117 KDM5AP29375 1690 aaKnown RBP9.71□□□□□ -0.86
ZNF540-206ENST00000589117 MROH1Q8NDA8 1641 aa9.71□□□□□ -0.86
ZNF540-206ENST00000589117 CACNB1Q02641 598 aaPredicted RBP9.71□□□□□ -0.86
ZNF540-206ENST00000589117 IFNL1Q8IU54 200 aa9.71□□□□□ -0.86
ZNF540-206ENST00000589117 CENPJQ9HC77 1338 aaPredicted RBP9.7□□□□□ -0.86
ZNF540-206ENST00000589117 GOLGA2Q08379 1002 aa9.7□□□□□ -0.86
ZNF540-206ENST00000589117 NEO1Q92859 1461 aa9.7□□□□□ -0.86
ZNF540-206ENST00000589117 ANP32AP39687 249 aaKnown RBP9.7□□□□□ -0.86
ZNF540-206ENST00000589117 CDCA7LQ96GN5 454 aa9.7□□□□□ -0.86
ZNF540-206ENST00000589117 TCERG1O14776 1098 aaKnown RBP9.69□□□□□ -0.86
ZNF540-206ENST00000589117 C14orf93Q9H972 538 aaKnown RBP9.69□□□□□ -0.86
ZNF540-206ENST00000589117 NRXN1Q9ULB1 1477 aa9.69□□□□□ -0.86
ZNF540-206ENST00000589117 EXOC6Q8TAG9 804 aa9.68□□□□□ -0.86
ZNF540-206ENST00000589117 HECW2Q9P2P5 1572 aa9.68□□□□□ -0.86
ZNF540-206ENST00000589117 SETBP1Q9Y6X0 1596 aa9.68□□□□□ -0.86
ZNF540-206ENST00000589117 PPRC1Q5VV67 1664 aaKnown RBP9.68□□□□□ -0.86
ZNF540-206ENST00000589117 MS4A4AQ96JQ5 239 aa9.68□□□□□ -0.86
ZNF540-206ENST00000589117 PUS7Q96PZ0 661 aaKnown RBP9.68□□□□□ -0.86
ZNF540-206ENST00000589117 NOS1P29475 1434 aa9.68□□□□□ -0.86
ZNF540-206ENST00000589117 RBM42Q9BTD8 480 aaKnown RBP9.67□□□□□ -0.86
ZNF540-206ENST00000589117 NPATQ14207 1427 aa9.67□□□□□ -0.86
ZNF540-206ENST00000589117 ADGRB3O60242 1522 aa9.67□□□□□ -0.86
ZNF540-206ENST00000589117 ABCA6Q8N139 1617 aa9.67□□□□□ -0.86
ZNF540-206ENST00000589117 C1orf115Q9H7X2 142 aa9.67□□□□□ -0.86
ZNF540-206ENST00000589117 ERVK-7P63135 1459 aa9.67□□□□□ -0.86
ZNF540-206ENST00000589117 UGGT1Q9NYU2 1555 aa9.66□□□□□ -0.86
ZNF540-206ENST00000589117 MS4A1P11836 297 aa9.66□□□□□ -0.86
ZNF540-206ENST00000589117 ZNF579Q8NAF0 562 aaKnown RBP9.66□□□□□ -0.86
ZNF540-206ENST00000589117 SLC52A1Q9NWF4 448 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms