RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 NUTM2FA1L443 756 aa21.19■□□□□ 0.98
VMP1-206ENST00000587945 ESCO1Q5FWF5 840 aa21.19■□□□□ 0.98
VMP1-206ENST00000587945 SOS2Q07890 1332 aaPredicted RBP21.19■□□□□ 0.98
VMP1-206ENST00000587945 ABCC11Q96J66 1382 aa21.19■□□□□ 0.98
VMP1-206ENST00000587945 CFAP70Q5T0N1 1121 aa21.18■□□□□ 0.98
VMP1-206ENST00000587945 C8orf37Q96NL8 207 aa21.18■□□□□ 0.98
VMP1-206ENST00000587945 C14orf93Q9H972 538 aaKnown RBP21.18■□□□□ 0.98
VMP1-206ENST00000587945 AFF2P51816 1311 aa21.18■□□□□ 0.98
VMP1-206ENST00000587945 TECPR2O15040 1411 aa21.18■□□□□ 0.98
VMP1-206ENST00000587945 YTHDC2Q9H6S0 1430 aaKnown RBP21.16■□□□□ 0.98
VMP1-206ENST00000587945 ADAMTS2O95450 1211 aa21.16■□□□□ 0.98
VMP1-206ENST00000587945 RXRBP28702 533 aa21.14■□□□□ 0.97
VMP1-206ENST00000587945 XPCQ01831 940 aaPredicted RBP21.14■□□□□ 0.97
VMP1-206ENST00000587945 IFT172Q9UG01 1749 aa21.14■□□□□ 0.97
VMP1-206ENST00000587945 FOXO3O43524 673 aa21.13■□□□□ 0.97
VMP1-206ENST00000587945 CDC42BPGQ6DT37 1551 aa21.12■□□□□ 0.97
VMP1-206ENST00000587945 NRXN1Q9ULB1 1477 aa21.12■□□□□ 0.97
VMP1-206ENST00000587945 NPHP3Q7Z494 1330 aa21.11■□□□□ 0.97
VMP1-206ENST00000587945 MYOM2P54296 1465 aa21.1■□□□□ 0.97
VMP1-206ENST00000587945 SIRT1Q96EB6 747 aa21.1■□□□□ 0.97
VMP1-206ENST00000587945 NGLY1Q96IV0 654 aa21.1■□□□□ 0.97
VMP1-206ENST00000587945 DHX57Q6P158 1386 aaKnown RBP21.1■□□□□ 0.97
VMP1-206ENST00000587945 LAMC1P11047 1609 aa21.09■□□□□ 0.97
VMP1-206ENST00000587945 SAFB2Q14151 953 aaKnown RBP eCLIP21.09■□□□□ 0.97
VMP1-206ENST00000587945 QTRT2Q9H974 415 aaKnown RBP21.09■□□□□ 0.97
VMP1-206ENST00000587945 KDM2AQ9Y2K7 1162 aa21.09■□□□□ 0.97
VMP1-206ENST00000587945 PRAM1Q96QH2 718 aa21.08■□□□□ 0.97
VMP1-206ENST00000587945 HRCP23327 699 aa21.06■□□□□ 0.96
VMP1-206ENST00000587945 PXDNQ92626 1479 aa21.06■□□□□ 0.96
VMP1-206ENST00000587945 DCAF11Q8TEB1 546 aa21.05■□□□□ 0.96
VMP1-206ENST00000587945 KNDC1Q76NI1 1749 aa21.04■□□□□ 0.96
VMP1-206ENST00000587945 RBM6P78332 1123 aaKnown RBP21.03■□□□□ 0.96
VMP1-206ENST00000587945 POGKQ9P215 609 aa21.03■□□□□ 0.96
VMP1-206ENST00000587945 UPF1Q92900 1129 aaKnown RBP eCLIP21.02■□□□□ 0.96
VMP1-206ENST00000587945 USP21Q9UK80 565 aa21.02■□□□□ 0.96
VMP1-206ENST00000587945 TRAK1Q9UPV9 953 aa21.02■□□□□ 0.96
VMP1-206ENST00000587945 KRT28Q7Z3Y7 464 aa21■□□□□ 0.95
VMP1-206ENST00000587945 FNBP4Q8N3X1 1017 aaPredicted RBP21■□□□□ 0.95
VMP1-206ENST00000587945 PHF8Q9UPP1 1060 aa21■□□□□ 0.95
VMP1-206ENST00000587945 CDK12Q9NYV4 1490 aaPredicted RBP21■□□□□ 0.95
VMP1-206ENST00000587945 SPATA31A3Q5VYP0 1347 aa20.99■□□□□ 0.95
VMP1-206ENST00000587945 RGS12O14924 1447 aa20.98■□□□□ 0.95
VMP1-206ENST00000587945 HIRIP3Q9BW71 556 aaPredicted RBP20.98■□□□□ 0.95
VMP1-206ENST00000587945 ADGRB1O14514 1584 aa20.97■□□□□ 0.95
VMP1-206ENST00000587945 FMN2Q9NZ56 1722 aa20.97■□□□□ 0.95
VMP1-206ENST00000587945 TRPC5Q9UL62 973 aaPredicted RBP20.96■□□□□ 0.95
VMP1-206ENST00000587945 MINK1Q8N4C8 1332 aaPredicted RBP20.96■□□□□ 0.95
VMP1-206ENST00000587945 DLC1Q96QB1 1528 aa20.95■□□□□ 0.94
VMP1-206ENST00000587945 PLEKHG5O94827 1062 aa20.95■□□□□ 0.94
VMP1-206ENST00000587945 PMFBP1Q8TBY8 1022 aa20.95■□□□□ 0.94
VMP1-206ENST00000587945 COL22A1Q8NFW1 1626 aaPredicted RBP20.95■□□□□ 0.94
VMP1-206ENST00000587945 STAC3Q96MF2 364 aa20.93■□□□□ 0.94
VMP1-206ENST00000587945 PSME1Q06323 249 aa20.92■□□□□ 0.94
VMP1-206ENST00000587945 ATRNO75882 1429 aa20.92■□□□□ 0.94
VMP1-206ENST00000587945 LMOD2Q6P5Q4 547 aa20.91■□□□□ 0.94
VMP1-206ENST00000587945 BCL9LQ86UU0 1499 aa20.91■□□□□ 0.94
VMP1-206ENST00000587945 CABLES1Q8TDN4 633 aa20.91■□□□□ 0.94
VMP1-206ENST00000587945 PRR36Q9H6K5 1346 aa20.9■□□□□ 0.94
VMP1-206ENST00000587945 KIF1AQ12756 1690 aa20.89■□□□□ 0.94
VMP1-206ENST00000587945 TNS3Q68CZ2 1445 aa20.89■□□□□ 0.94
VMP1-206ENST00000587945 ANKARQ7Z5J8 1434 aa20.89■□□□□ 0.94
VMP1-206ENST00000587945 WASLO00401 505 aaPredicted RBP20.88■□□□□ 0.93
VMP1-206ENST00000587945 HAP1P54257 671 aaPredicted RBP20.88■□□□□ 0.93
VMP1-206ENST00000587945 SBNO1A3KN83 1393 aa20.87■□□□□ 0.93
VMP1-206ENST00000587945 UNC5CLQ8IV45 518 aa20.85■□□□□ 0.93
VMP1-206ENST00000587945 GJD4Q96KN9 370 aaPredicted RBP20.85■□□□□ 0.93
VMP1-206ENST00000587945 ADGRB2O60241 1585 aa20.85■□□□□ 0.93
VMP1-206ENST00000587945 USP32Q8NFA0 1604 aa20.84■□□□□ 0.93
VMP1-206ENST00000587945 RGPD8O14715 1765 aaPredicted RBP20.83■□□□□ 0.93
VMP1-206ENST00000587945 ARHGEF10O15013 1369 aa20.83■□□□□ 0.92
VMP1-206ENST00000587945 SLIT2O94813 1529 aa20.83■□□□□ 0.92
VMP1-206ENST00000587945 NBPF1Q3BBV0 1214 aa20.82■□□□□ 0.92
VMP1-206ENST00000587945 EIF3AQ14152 1382 aaKnown RBP20.82■□□□□ 0.92
VMP1-206ENST00000587945 NGDNQ8NEJ9 315 aaKnown RBP20.81■□□□□ 0.92
VMP1-206ENST00000587945 TULP4Q9NRJ4 1543 aa20.81■□□□□ 0.92
VMP1-206ENST00000587945 GPRASP1Q5JY77 1395 aa20.81■□□□□ 0.92
VMP1-206ENST00000587945 ATAD2Q6PL18 1390 aa20.81■□□□□ 0.92
VMP1-206ENST00000587945 NUDT16Q96DE0 195 aaKnown RBP20.8■□□□□ 0.92
VMP1-206ENST00000587945 FAM83GA6ND36 823 aa20.78■□□□□ 0.92
VMP1-206ENST00000587945 CDK19Q9BWU1 502 aa20.78■□□□□ 0.92
VMP1-206ENST00000587945 RALGAPBQ86X10 1494 aa20.77■□□□□ 0.92
VMP1-206ENST00000587945 PAK3O75914 559 aaPredicted RBP20.77■□□□□ 0.92
VMP1-206ENST00000587945 MARF1Q9Y4F3 1742 aaKnown RBP20.75■□□□□ 0.91
VMP1-206ENST00000587945 VPS72Q15906 364 aa20.75■□□□□ 0.91
VMP1-206ENST00000587945 SIN3AQ96ST3 1273 aa20.75■□□□□ 0.91
VMP1-206ENST00000587945 CCDC9Q9Y3X0 531 aaKnown RBP20.75■□□□□ 0.91
VMP1-206ENST00000587945 L3MBTL2Q969R5 705 aa20.74■□□□□ 0.91
VMP1-206ENST00000587945 ATP7BP35670 1465 aa20.74■□□□□ 0.91
VMP1-206ENST00000587945 ARHGEF28Q8N1W1 1705 aaKnown RBP20.73■□□□□ 0.91
VMP1-206ENST00000587945 GLI3P10071 1580 aa20.72■□□□□ 0.91
VMP1-206ENST00000587945 SEPT12Q8IYM1 358 aa20.71■□□□□ 0.91
VMP1-206ENST00000587945 BTG4Q9NY30 223 aa20.71■□□□□ 0.91
VMP1-206ENST00000587945 TRPM3Q9HCF6 1732 aaPredicted RBP20.7■□□□□ 0.9
VMP1-206ENST00000587945 NEUROD1Q13562 356 aa20.7■□□□□ 0.9
VMP1-206ENST00000587945 CCDC61Q9Y6R9 512 aa20.7■□□□□ 0.9
VMP1-206ENST00000587945 NUTM2GQ5VZR2 741 aa20.69■□□□□ 0.9
VMP1-206ENST00000587945 ACEP12821 1306 aa20.69■□□□□ 0.9
VMP1-206ENST00000587945 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.69■□□□□ 0.9
VMP1-206ENST00000587945 NBPF8Q3BBV2 869 aa20.68■□□□□ 0.9
VMP1-206ENST00000587945 CENPJQ9HC77 1338 aaPredicted RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms