RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 XPCQ01831 940 aaPredicted RBP17.46■□□□□ 0.39
LIG3-207ENST00000586119 TMEM132EQ6IEE7 984 aa17.46■□□□□ 0.39
LIG3-207ENST00000586119 LAMC1P11047 1609 aa17.46■□□□□ 0.39
LIG3-207ENST00000586119 CDK12Q9NYV4 1490 aaPredicted RBP17.45■□□□□ 0.38
LIG3-207ENST00000586119 ESCO1Q5FWF5 840 aa17.45■□□□□ 0.38
LIG3-207ENST00000586119 MPHOSPH9Q99550 1183 aa17.44■□□□□ 0.38
LIG3-207ENST00000586119 FOXO3O43524 673 aa17.43■□□□□ 0.38
LIG3-207ENST00000586119 USP21Q9UK80 565 aa17.43■□□□□ 0.38
LIG3-207ENST00000586119 PLEKHH1Q9ULM0 1364 aa17.42■□□□□ 0.38
LIG3-207ENST00000586119 PRAG1Q86YV5 1406 aa17.42■□□□□ 0.38
LIG3-207ENST00000586119 SPATA31E1Q6ZUB1 1445 aa17.4■□□□□ 0.38
LIG3-207ENST00000586119 FNBP4Q8N3X1 1017 aaPredicted RBP17.39■□□□□ 0.37
LIG3-207ENST00000586119 CCDC144AA2RUR9 1427 aa17.38■□□□□ 0.37
LIG3-207ENST00000586119 IFT172Q9UG01 1749 aa17.38■□□□□ 0.37
LIG3-207ENST00000586119 PXDNQ92626 1479 aa17.37■□□□□ 0.37
LIG3-207ENST00000586119 TRPC5Q9UL62 973 aaPredicted RBP17.37■□□□□ 0.37
LIG3-207ENST00000586119 NPHP3Q7Z494 1330 aa17.37■□□□□ 0.37
LIG3-207ENST00000586119 LRPPRCP42704 1394 aaKnown RBP17.37■□□□□ 0.37
LIG3-207ENST00000586119 CDC42BPGQ6DT37 1551 aa17.36■□□□□ 0.37
LIG3-207ENST00000586119 COL22A1Q8NFW1 1626 aaPredicted RBP17.36■□□□□ 0.37
LIG3-207ENST00000586119 ABCC11Q96J66 1382 aa17.35■□□□□ 0.37
LIG3-207ENST00000586119 MYOM2P54296 1465 aa17.35■□□□□ 0.37
LIG3-207ENST00000586119 RGPD8O14715 1765 aaPredicted RBP17.35■□□□□ 0.37
LIG3-207ENST00000586119 TECPR2O15040 1411 aa17.34■□□□□ 0.37
LIG3-207ENST00000586119 ATRNO75882 1429 aa17.34■□□□□ 0.37
LIG3-207ENST00000586119 CFAP70Q5T0N1 1121 aa17.34■□□□□ 0.37
LIG3-207ENST00000586119 ANKRD30BQ9BXX2 1392 aa17.34■□□□□ 0.37
LIG3-207ENST00000586119 BCL9LQ86UU0 1499 aa17.33■□□□□ 0.37
LIG3-207ENST00000586119 PLEKHG5O94827 1062 aa17.33■□□□□ 0.36
LIG3-207ENST00000586119 PIK3C2GO75747 1445 aa17.32■□□□□ 0.36
LIG3-207ENST00000586119 YTHDC2Q9H6S0 1430 aaKnown RBP17.32■□□□□ 0.36
LIG3-207ENST00000586119 MARF1Q9Y4F3 1742 aaKnown RBP17.32■□□□□ 0.36
LIG3-207ENST00000586119 SAFB2Q14151 953 aaKnown RBP eCLIP17.31■□□□□ 0.36
LIG3-207ENST00000586119 KRT28Q7Z3Y7 464 aa17.31■□□□□ 0.36
LIG3-207ENST00000586119 C14orf93Q9H972 538 aaKnown RBP17.31■□□□□ 0.36
LIG3-207ENST00000586119 KNDC1Q76NI1 1749 aa17.3■□□□□ 0.36
LIG3-207ENST00000586119 FMN2Q9NZ56 1722 aa17.3■□□□□ 0.36
LIG3-207ENST00000586119 SPATA31A3Q5VYP0 1347 aa17.29■□□□□ 0.36
LIG3-207ENST00000586119 CABLES1Q8TDN4 633 aa17.29■□□□□ 0.36
LIG3-207ENST00000586119 GJD4Q96KN9 370 aaPredicted RBP17.29■□□□□ 0.36
LIG3-207ENST00000586119 ATAD2Q6PL18 1390 aa17.28■□□□□ 0.36
LIG3-207ENST00000586119 SIRT1Q96EB6 747 aa17.27■□□□□ 0.36
LIG3-207ENST00000586119 PRAM1Q96QH2 718 aa17.26■□□□□ 0.35
LIG3-207ENST00000586119 PHF8Q9UPP1 1060 aa17.26■□□□□ 0.35
LIG3-207ENST00000586119 UNC5CLQ8IV45 518 aa17.24■□□□□ 0.35
LIG3-207ENST00000586119 PMFBP1Q8TBY8 1022 aa17.24■□□□□ 0.35
LIG3-207ENST00000586119 DHX57Q6P158 1386 aaKnown RBP17.24■□□□□ 0.35
LIG3-207ENST00000586119 NRXN1Q9ULB1 1477 aa17.24■□□□□ 0.35
LIG3-207ENST00000586119 GLI3P10071 1580 aa17.23■□□□□ 0.35
LIG3-207ENST00000586119 SLIT2O94813 1529 aa17.22■□□□□ 0.35
LIG3-207ENST00000586119 LMOD2Q6P5Q4 547 aa17.22■□□□□ 0.35
LIG3-207ENST00000586119 KDM2AQ9Y2K7 1162 aa17.22■□□□□ 0.35
LIG3-207ENST00000586119 KIF1AQ12756 1690 aa17.22■□□□□ 0.35
LIG3-207ENST00000586119 BRWD3Q6RI45 1802 aa17.21■□□□□ 0.35
LIG3-207ENST00000586119 RALGAPBQ86X10 1494 aa17.21■□□□□ 0.35
LIG3-207ENST00000586119 RAB3GAP2Q9H2M9 1393 aa17.21■□□□□ 0.35
LIG3-207ENST00000586119 HIRIP3Q9BW71 556 aaPredicted RBP17.21■□□□□ 0.35
LIG3-207ENST00000586119 TRAK1Q9UPV9 953 aa17.21■□□□□ 0.35
LIG3-207ENST00000586119 PSME1Q06323 249 aa17.2■□□□□ 0.34
LIG3-207ENST00000586119 POGKQ9P215 609 aa17.2■□□□□ 0.34
LIG3-207ENST00000586119 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.2■□□□□ 0.34
LIG3-207ENST00000586119 EP400Q96L91 3159 aa17.2■□□□□ 0.34
LIG3-207ENST00000586119 USP32Q8NFA0 1604 aa17.19■□□□□ 0.34
LIG3-207ENST00000586119 FAM83GA6ND36 823 aa17.19■□□□□ 0.34
LIG3-207ENST00000586119 HAP1P54257 671 aaPredicted RBP17.19■□□□□ 0.34
LIG3-207ENST00000586119 TNS3Q68CZ2 1445 aa17.19■□□□□ 0.34
LIG3-207ENST00000586119 DEFB132Q7Z7B7 95 aa17.17■□□□□ 0.34
LIG3-207ENST00000586119 SEPT12Q8IYM1 358 aa17.17■□□□□ 0.34
LIG3-207ENST00000586119 MINK1Q8N4C8 1332 aaPredicted RBP17.17■□□□□ 0.34
LIG3-207ENST00000586119 PRR36Q9H6K5 1346 aa17.17■□□□□ 0.34
LIG3-207ENST00000586119 ZRANB1Q9UGI0 708 aa17.16■□□□□ 0.34
LIG3-207ENST00000586119 SBNO1A3KN83 1393 aa17.15■□□□□ 0.34
LIG3-207ENST00000586119 VPS72Q15906 364 aa17.15■□□□□ 0.34
LIG3-207ENST00000586119 CCDC125Q86Z20 511 aa17.15■□□□□ 0.34
LIG3-207ENST00000586119 DCAF11Q8TEB1 546 aa17.15■□□□□ 0.34
LIG3-207ENST00000586119 CCDC9Q9Y3X0 531 aaKnown RBP17.15■□□□□ 0.34
LIG3-207ENST00000586119 ADGRB1O14514 1584 aa17.15■□□□□ 0.34
LIG3-207ENST00000586119 PLCH1Q4KWH8 1693 aa17.14■□□□□ 0.33
LIG3-207ENST00000586119 ABCA3Q99758 1704 aa17.14■□□□□ 0.33
LIG3-207ENST00000586119 DLC1Q96QB1 1528 aa17.14■□□□□ 0.33
LIG3-207ENST00000586119 SRCAPQ6ZRS2 3230 aa17.13■□□□□ 0.33
LIG3-207ENST00000586119 ONECUT3O60422 494 aaPredicted RBP17.12■□□□□ 0.33
LIG3-207ENST00000586119 TRPM3Q9HCF6 1732 aaPredicted RBP17.11■□□□□ 0.33
LIG3-207ENST00000586119 WASLO00401 505 aaPredicted RBP17.1■□□□□ 0.33
LIG3-207ENST00000586119 BTG4Q9NY30 223 aa17.1■□□□□ 0.33
LIG3-207ENST00000586119 ACIN1Q9UKV3 1341 aaKnown RBP17.1■□□□□ 0.33
LIG3-207ENST00000586119 ARHGEF10O15013 1369 aa17.1■□□□□ 0.33
LIG3-207ENST00000586119 ANKARQ7Z5J8 1434 aa17.1■□□□□ 0.33
LIG3-207ENST00000586119 NWD2Q9ULI1 1742 aa17.1■□□□□ 0.33
LIG3-207ENST00000586119 KRT27Q7Z3Y8 459 aa17.09■□□□□ 0.33
LIG3-207ENST00000586119 BLMP54132 1417 aaPredicted RBP17.09■□□□□ 0.33
LIG3-207ENST00000586119 ADGRB2O60241 1585 aa17.08■□□□□ 0.32
LIG3-207ENST00000586119 FAM98CQ17RN3 349 aaKnown RBP17.08■□□□□ 0.32
LIG3-207ENST00000586119 FAM182BQ5T319 152 aa17.08■□□□□ 0.32
LIG3-207ENST00000586119 ALS2Q96Q42 1657 aa17.07■□□□□ 0.32
LIG3-207ENST00000586119 PAK3O75914 559 aaPredicted RBP17.07■□□□□ 0.32
LIG3-207ENST00000586119 A0A0G2JS52 829 aa17.06■□□□□ 0.32
LIG3-207ENST00000586119 MYT1Q01538 1121 aa17.06■□□□□ 0.32
LIG3-207ENST00000586119 NGDNQ8NEJ9 315 aaKnown RBP17.06■□□□□ 0.32
LIG3-207ENST00000586119 NRAPQ86VF7 1730 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms