RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 TRIM26Q12899 539 aaPredicted RBP8.89□□□□□ -0.99
SS18-223ENST00000583595 Q3C1V9 767 aa8.89□□□□□ -0.99
SS18-223ENST00000583595 FAM160A2Q8N612 972 aaPredicted RBP8.89□□□□□ -0.99
SS18-223ENST00000583595 HOXA2O43364 376 aa8.88□□□□□ -0.99
SS18-223ENST00000583595 SLC19A1P41440 591 aa8.88□□□□□ -0.99
SS18-223ENST00000583595 PARP9Q8IXQ6 854 aa8.87□□□□□ -0.99
SS18-223ENST00000583595 EMID1Q96A84 441 aaPredicted RBP8.87□□□□□ -0.99
SS18-223ENST00000583595 GUCA2AQ02747 115 aa8.86□□□□□ -0.99
SS18-223ENST00000583595 LIAT1Q6ZQX7 453 aa8.85□□□□□ -0.99
SS18-223ENST00000583595 BEGAINQ9BUH8 593 aa8.85□□□□□ -0.99
SS18-223ENST00000583595 PRDM9Q9NQV7 894 aa8.85□□□□□ -0.99
SS18-223ENST00000583595 GFRA3O60609 400 aa8.84□□□□□ -0.99
SS18-223ENST00000583595 HRCP23327 699 aa8.84□□□□□ -0.99
SS18-223ENST00000583595 MSS51Q4VC12 460 aa8.84□□□□□ -0.99
SS18-223ENST00000583595 PLA2G2CQ5R387 149 aa8.84□□□□□ -0.99
SS18-223ENST00000583595 SPIRE2Q8WWL2 714 aa8.84□□□□□ -0.99
SS18-223ENST00000583595 USB1Q9BQ65 265 aaKnown RBP8.84□□□□□ -0.99
SS18-223ENST00000583595 RSPH6AQ9H0K4 717 aa8.84□□□□□ -0.99
SS18-223ENST00000583595 FCF1Q9Y324 198 aaKnown RBP8.84□□□□□ -0.99
SS18-223ENST00000583595 PDE4DQ08499 809 aa8.83□□□□□ -1
SS18-223ENST00000583595 SPRYD7Q5W111 196 aa8.83□□□□□ -1
SS18-223ENST00000583595 ARID3AQ99856 593 aa8.83□□□□□ -1
SS18-223ENST00000583595 KDM4CQ9H3R0 1056 aa8.83□□□□□ -1
SS18-223ENST00000583595 MS4A1P11836 297 aa8.82□□□□□ -1
SS18-223ENST00000583595 LAPTM4AQ15012 233 aa8.82□□□□□ -1
SS18-223ENST00000583595 SYMPKQ92797 1274 aaKnown RBP8.82□□□□□ -1
SS18-223ENST00000583595 FDX1P10109 184 aa8.81□□□□□ -1
SS18-223ENST00000583595 MOXD2PA6NHM9 499 aa8.8□□□□□ -1
SS18-223ENST00000583595 NDUFV2P19404 249 aa8.8□□□□□ -1
SS18-223ENST00000583595 ZNF598Q86UK7 904 aaKnown RBP8.8□□□□□ -1
SS18-223ENST00000583595 PCDHGC3Q9UN70 934 aa8.8□□□□□ -1
SS18-223ENST00000583595 PDZRN3Q9UPQ7 1066 aa8.8□□□□□ -1
SS18-223ENST00000583595 MMP16P51512 607 aa8.79□□□□□ -1
SS18-223ENST00000583595 Q6ZNB5 142 aa8.79□□□□□ -1
SS18-223ENST00000583595 TBC1D2Q9BYX2 928 aa8.79□□□□□ -1
SS18-223ENST00000583595 C6orf229H3BNL8 230 aa8.78□□□□□ -1
SS18-223ENST00000583595 NRG2O14511 850 aaPredicted RBP8.78□□□□□ -1
SS18-223ENST00000583595 ZNF697Q5TEC3 545 aa8.78□□□□□ -1
SS18-223ENST00000583595 C1orf115Q9H7X2 142 aa8.78□□□□□ -1
SS18-223ENST00000583595 DXOO77932 396 aaKnown RBP8.77□□□□□ -1.01
SS18-223ENST00000583595 RPIAP49247 311 aa8.77□□□□□ -1.01
SS18-223ENST00000583595 RETREG3Q86VR2 466 aa8.77□□□□□ -1.01
SS18-223ENST00000583595 RANGAP1P46060 587 aaPredicted RBP8.76□□□□□ -1.01
SS18-223ENST00000583595 DIXDC1Q155Q3 683 aa8.76□□□□□ -1.01
SS18-223ENST00000583595 TRIM67Q6ZTA4 783 aa8.76□□□□□ -1.01
SS18-223ENST00000583595 ZBTB24O43167 697 aaPredicted RBP8.75□□□□□ -1.01
SS18-223ENST00000583595 CD2BP2O95400 341 aaKnown RBP8.75□□□□□ -1.01
SS18-223ENST00000583595 JUNDP17535 347 aa8.74□□□□□ -1.01
SS18-223ENST00000583595 CCDC24Q8N4L8 307 aa8.74□□□□□ -1.01
SS18-223ENST00000583595 FAM117AQ9C073 453 aa8.74□□□□□ -1.01
SS18-223ENST00000583595 RSBN1LQ6PCB5 846 aaPredicted RBP8.73□□□□□ -1.01
SS18-223ENST00000583595 ARID3CA6NKF2 412 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 TNFRSF10AO00220 468 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 SPTLC1O15269 473 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 GDF9O60383 454 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 GJA5P36382 358 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 PRR20EP86478 221 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 PRR20CP86479 221 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 PRR20DP86480 221 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 PRR20BP86481 221 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 PRR20AP86496 221 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 FOXC1Q12948 553 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 PCDHB15Q9Y5E8 787 aa8.72□□□□□ -1.01
SS18-223ENST00000583595 MTMR2Q13614 643 aa8.71□□□□□ -1.02
SS18-223ENST00000583595 RIC3Q7Z5B4 369 aa8.71□□□□□ -1.02
SS18-223ENST00000583595 PKD2L1Q9P0L9 805 aa8.71□□□□□ -1.02
SS18-223ENST00000583595 SPDYE5A6NIY4 337 aa8.7□□□□□ -1.02
SS18-223ENST00000583595 PRR7Q8TB68 274 aa8.7□□□□□ -1.02
SS18-223ENST00000583595 APBB1O00213 710 aa8.69□□□□□ -1.02
SS18-223ENST00000583595 TRIM32Q13049 653 aa8.69□□□□□ -1.02
SS18-223ENST00000583595 MYSM1Q5VVJ2 828 aa8.69□□□□□ -1.02
SS18-223ENST00000583595 TRAF7Q6Q0C0 670 aa8.69□□□□□ -1.02
SS18-223ENST00000583595 NUDT12Q9BQG2 462 aa8.69□□□□□ -1.02
SS18-223ENST00000583595 LCE2BO14633 110 aa8.68□□□□□ -1.02
SS18-223ENST00000583595 CSPP1Q1MSJ5 1256 aa8.68□□□□□ -1.02
SS18-223ENST00000583595 NPM2Q86SE8 214 aaKnown RBP8.68□□□□□ -1.02
SS18-223ENST00000583595 PLEKHG3A1L390 1219 aa8.67□□□□□ -1.02
SS18-223ENST00000583595 ZBTB3Q9H5J0 574 aa8.67□□□□□ -1.02
SS18-223ENST00000583595 LIMD1Q9UGP4 676 aa8.67□□□□□ -1.02
SS18-223ENST00000583595 PTCRAQ6ISU1 281 aaPredicted RBP8.66□□□□□ -1.02
SS18-223ENST00000583595 CABLES1Q8TDN4 633 aa8.66□□□□□ -1.02
SS18-223ENST00000583595 FAM187AA6NFU0 413 aa8.65□□□□□ -1.02
SS18-223ENST00000583595 CCNYL3P0C7X3 344 aa8.65□□□□□ -1.02
SS18-223ENST00000583595 PTPRNQ16849 979 aa8.65□□□□□ -1.02
SS18-223ENST00000583595 PKDCCQ504Y2 493 aa8.65□□□□□ -1.02
SS18-223ENST00000583595 PRPF38BQ5VTL8 546 aaKnown RBP8.65□□□□□ -1.02
SS18-223ENST00000583595 DESI1Q6ICB0 168 aa8.65□□□□□ -1.02
SS18-223ENST00000583595 CFAP99D6REC4 459 aa8.64□□□□□ -1.03
SS18-223ENST00000583595 DGAT1O75907 488 aa8.64□□□□□ -1.03
SS18-223ENST00000583595 QPCTQ16769 361 aa8.64□□□□□ -1.03
SS18-223ENST00000583595 POLR3EQ9NVU0 708 aa8.64□□□□□ -1.03
SS18-223ENST00000583595 NUTM2BA6NNL0 878 aaPredicted RBP8.63□□□□□ -1.03
SS18-223ENST00000583595 NUTM2EB1AL46 878 aaPredicted RBP8.63□□□□□ -1.03
SS18-223ENST00000583595 WNT7AO00755 349 aa8.63□□□□□ -1.03
SS18-223ENST00000583595 TUSC1Q2TAM9 212 aa8.63□□□□□ -1.03
SS18-223ENST00000583595 NUTM2DQ5VT03 806 aaPredicted RBP8.63□□□□□ -1.03
SS18-223ENST00000583595 NUTM2AQ8IVF1 878 aaPredicted RBP8.63□□□□□ -1.03
SS18-223ENST00000583595 CYP4X1Q8N118 509 aa8.63□□□□□ -1.03
SS18-223ENST00000583595 EVA1BQ9NVM1 165 aa8.63□□□□□ -1.03
SS18-223ENST00000583595 TOR4AQ9NXH8 423 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms