RNA–Protein interactions for RNA: ENST00000583475.1

VAPA-206, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 939 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-206ENST00000583475 DDRGK1Q96HY6 314 aa8.41□□□□□ -1.06
VAPA-206ENST00000583475 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.41□□□□□ -1.06
VAPA-206ENST00000583475 RIC3Q7Z5B4 369 aa8.4□□□□□ -1.06
VAPA-206ENST00000583475 PCDHB15Q9Y5E8 787 aa8.4□□□□□ -1.06
VAPA-206ENST00000583475 RGS20O76081 388 aa8.39□□□□□ -1.07
VAPA-206ENST00000583475 S1PR4O95977 384 aa8.39□□□□□ -1.07
VAPA-206ENST00000583475 SLC6A16Q9GZN6 736 aa8.39□□□□□ -1.07
VAPA-206ENST00000583475 RSPH6AQ9H0K4 717 aa8.39□□□□□ -1.07
VAPA-206ENST00000583475 IL27Q8NEV9 243 aa8.38□□□□□ -1.07
VAPA-206ENST00000583475 USB1Q9BQ65 265 aaKnown RBP8.38□□□□□ -1.07
VAPA-206ENST00000583475 LIMD1Q9UGP4 676 aa8.38□□□□□ -1.07
VAPA-206ENST00000583475 RNF223E7ERA6 249 aa8.37□□□□□ -1.07
VAPA-206ENST00000583475 PPEF1O14829 653 aaPredicted RBP8.37□□□□□ -1.07
VAPA-206ENST00000583475 POLR3EQ9NVU0 708 aa8.37□□□□□ -1.07
VAPA-206ENST00000583475 GGCXP38435 758 aa8.36□□□□□ -1.07
VAPA-206ENST00000583475 SKIV2LQ15477 1246 aaKnown RBP8.36□□□□□ -1.07
VAPA-206ENST00000583475 TUSC1Q2TAM9 212 aa8.36□□□□□ -1.07
VAPA-206ENST00000583475 MSS51Q4VC12 460 aa8.36□□□□□ -1.07
VAPA-206ENST00000583475 C6orf229H3BNL8 230 aa8.35□□□□□ -1.07
VAPA-206ENST00000583475 RETREG3Q86VR2 466 aa8.35□□□□□ -1.07
VAPA-206ENST00000583475 PRDM9Q9NQV7 894 aa8.35□□□□□ -1.07
VAPA-206ENST00000583475 HRCP23327 699 aa8.34□□□□□ -1.07
VAPA-206ENST00000583475 CLK2P49760 499 aaKnown RBP8.34□□□□□ -1.07
VAPA-206ENST00000583475 MMP16P51512 607 aa8.34□□□□□ -1.07
VAPA-206ENST00000583475 SH3D19Q5HYK7 790 aa8.34□□□□□ -1.07
VAPA-206ENST00000583475 MTMR2Q13614 643 aa8.33□□□□□ -1.08
VAPA-206ENST00000583475 CSPP1Q1MSJ5 1256 aa8.33□□□□□ -1.08
VAPA-206ENST00000583475 PRPF38BQ5VTL8 546 aaKnown RBP8.33□□□□□ -1.08
VAPA-206ENST00000583475 ANKLE1Q8NAG6 615 aa8.33□□□□□ -1.08
VAPA-206ENST00000583475 PROCA1Q8NCQ7 364 aaPredicted RBP8.33□□□□□ -1.08
VAPA-206ENST00000583475 CABLES1Q8TDN4 633 aa8.33□□□□□ -1.08
VAPA-206ENST00000583475 SPDYE5A6NIY4 337 aa8.32□□□□□ -1.08
VAPA-206ENST00000583475 LILRB3O75022 631 aa8.32□□□□□ -1.08
VAPA-206ENST00000583475 DXOO77932 396 aaKnown RBP8.32□□□□□ -1.08
VAPA-206ENST00000583475 QPCTQ16769 361 aa8.32□□□□□ -1.08
VAPA-206ENST00000583475 EMID1Q96A84 441 aaPredicted RBP8.32□□□□□ -1.08
VAPA-206ENST00000583475 PRR7Q8TB68 274 aa8.31□□□□□ -1.08
VAPA-206ENST00000583475 ZBTB3Q9H5J0 574 aa8.31□□□□□ -1.08
VAPA-206ENST00000583475 GOPCQ9HD26 462 aa8.31□□□□□ -1.08
VAPA-206ENST00000583475 RTL5Q5HYW3 569 aaPredicted RBP8.3□□□□□ -1.08
VAPA-206ENST00000583475 PLA2G2CQ5R387 149 aa8.3□□□□□ -1.08
VAPA-206ENST00000583475 FBXO31Q5XUX0 539 aaPredicted RBP8.3□□□□□ -1.08
VAPA-206ENST00000583475 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.3□□□□□ -1.08
VAPA-206ENST00000583475 FCF1Q9Y324 198 aaKnown RBP8.3□□□□□ -1.08
VAPA-206ENST00000583475 JUNDP17535 347 aa8.29□□□□□ -1.08
VAPA-206ENST00000583475 PRKD2Q9BZL6 878 aa8.29□□□□□ -1.08
VAPA-206ENST00000583475 NUTM2BA6NNL0 878 aaPredicted RBP8.28□□□□□ -1.08
VAPA-206ENST00000583475 NUTM2EB1AL46 878 aaPredicted RBP8.28□□□□□ -1.08
VAPA-206ENST00000583475 CFAP99D6REC4 459 aa8.28□□□□□ -1.08
VAPA-206ENST00000583475 NUTM2DQ5VT03 806 aaPredicted RBP8.28□□□□□ -1.08
VAPA-206ENST00000583475 DESI1Q6ICB0 168 aa8.28□□□□□ -1.08
VAPA-206ENST00000583475 LIAT1Q6ZQX7 453 aa8.28□□□□□ -1.08
VAPA-206ENST00000583475 NUTM2AQ8IVF1 878 aaPredicted RBP8.28□□□□□ -1.08
VAPA-206ENST00000583475 V9GY48 417 aaPredicted RBP8.27□□□□□ -1.09
VAPA-206ENST00000583475 SLC19A1P41440 591 aa8.26□□□□□ -1.09
VAPA-206ENST00000583475 PPP2R2DQ66LE6 453 aa8.26□□□□□ -1.09
VAPA-206ENST00000583475 LYPD8Q6UX82 237 aa8.25□□□□□ -1.09
VAPA-206ENST00000583475 PCMTD1Q96MG8 357 aaPredicted RBP8.25□□□□□ -1.09
VAPA-206ENST00000583475 CCDC24Q8N4L8 307 aa8.24□□□□□ -1.09
VAPA-206ENST00000583475 ATP1B4Q9UN42 357 aaPredicted RBP8.24□□□□□ -1.09
VAPA-206ENST00000583475 PTPRNQ16849 979 aa8.23□□□□□ -1.09
VAPA-206ENST00000583475 SPRYD7Q5W111 196 aa8.23□□□□□ -1.09
VAPA-206ENST00000583475 NUDT12Q9BQG2 462 aa8.23□□□□□ -1.09
VAPA-206ENST00000583475 EVA1BQ9NVM1 165 aa8.23□□□□□ -1.09
VAPA-206ENST00000583475 PER1O15534 1290 aaPredicted RBP8.22□□□□□ -1.09
VAPA-206ENST00000583475 RPIAP49247 311 aa8.22□□□□□ -1.09
VAPA-206ENST00000583475 PTCRAQ6ISU1 281 aaPredicted RBP8.22□□□□□ -1.09
VAPA-206ENST00000583475 CCNYL3P0C7X3 344 aa8.21□□□□□ -1.1
VAPA-206ENST00000583475 CTDSPL2Q05D32 466 aa8.21□□□□□ -1.1
VAPA-206ENST00000583475 TSC1Q92574 1164 aa8.21□□□□□ -1.1
VAPA-206ENST00000583475 ZBTB24O43167 697 aaPredicted RBP8.2□□□□□ -1.1
VAPA-206ENST00000583475 CD2BP2O95400 341 aaKnown RBP8.2□□□□□ -1.1
VAPA-206ENST00000583475 ZNF598Q86UK7 904 aaKnown RBP8.2□□□□□ -1.1
VAPA-206ENST00000583475 IRX2Q9BZI1 471 aaPredicted RBP8.2□□□□□ -1.1
VAPA-206ENST00000583475 RFC5P40937 340 aa8.19□□□□□ -1.1
VAPA-206ENST00000583475 KCNH2Q12809 1159 aa8.19□□□□□ -1.1
VAPA-206ENST00000583475 F12P00748 615 aaPredicted RBP8.18□□□□□ -1.1
VAPA-206ENST00000583475 HELBQ8NG08 1087 aaPredicted RBP8.18□□□□□ -1.1
VAPA-206ENST00000583475 TRIM32Q13049 653 aa8.17□□□□□ -1.1
VAPA-206ENST00000583475 ZNF697Q5TEC3 545 aa8.17□□□□□ -1.1
VAPA-206ENST00000583475 AP1G2O75843 785 aa8.16□□□□□ -1.1
VAPA-206ENST00000583475 TRIM67Q6ZTA4 783 aa8.16□□□□□ -1.1
VAPA-206ENST00000583475 MAP10Q9P2G4 905 aa8.16□□□□□ -1.1
VAPA-206ENST00000583475 CTHP32929 405 aa8.15□□□□□ -1.1
VAPA-206ENST00000583475 TMEM259Q4ZIN3 620 aa8.15□□□□□ -1.1
VAPA-206ENST00000583475 LRRN4Q8WUT4 740 aa8.15□□□□□ -1.1
VAPA-206ENST00000583475 UNC93B1Q9H1C4 597 aa8.15□□□□□ -1.1
VAPA-206ENST00000583475 GDF9O60383 454 aa8.14□□□□□ -1.11
VAPA-206ENST00000583475 PKD2L1Q9P0L9 805 aa8.14□□□□□ -1.11
VAPA-206ENST00000583475 SKOR1P84550 965 aa8.13□□□□□ -1.11
VAPA-206ENST00000583475 BAP1Q92560 729 aa8.13□□□□□ -1.11
VAPA-206ENST00000583475 USP17L8P0C7I0 530 aa8.12□□□□□ -1.11
VAPA-206ENST00000583475 GFRA3O60609 400 aa8.11□□□□□ -1.11
VAPA-206ENST00000583475 WNT7BP56706 349 aa8.11□□□□□ -1.11
VAPA-206ENST00000583475 FOXC1Q12948 553 aa8.11□□□□□ -1.11
VAPA-206ENST00000583475 PDZRN3Q9UPQ7 1066 aa8.11□□□□□ -1.11
VAPA-206ENST00000583475 WNT7AO00755 349 aa8.1□□□□□ -1.11
VAPA-206ENST00000583475 SH3BP2P78314 561 aa8.1□□□□□ -1.11
VAPA-206ENST00000583475 PRR20EP86478 221 aa8.1□□□□□ -1.11
VAPA-206ENST00000583475 PRR20CP86479 221 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms