RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 ZPR1O75312 459 aa9.81□□□□□ -0.84
SMCHD1-204ENST00000581226 ZNF516Q92618 1163 aa9.81□□□□□ -0.84
SMCHD1-204ENST00000581226 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.81□□□□□ -0.84
SMCHD1-204ENST00000581226 NUTM2BA6NNL0 878 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 NUTM2EB1AL46 878 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 FMNL1O95466 1100 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 MTMR2Q13614 643 aa9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 NUTM2DQ5VT03 806 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 PRPF38BQ5VTL8 546 aaKnown RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 RNF19BQ6ZMZ0 732 aa9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 NUTM2AQ8IVF1 878 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 SYMPKQ92797 1274 aaKnown RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 ZBTB3Q9H5J0 574 aa9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 SALL2Q9Y467 1007 aaPredicted RBP9.8□□□□□ -0.84
SMCHD1-204ENST00000581226 LILRB3O75022 631 aa9.79□□□□□ -0.84
SMCHD1-204ENST00000581226 QPCTQ16769 361 aa9.79□□□□□ -0.84
SMCHD1-204ENST00000581226 BRICD5Q6PL45 260 aa9.79□□□□□ -0.84
SMCHD1-204ENST00000581226 CABLES1Q8TDN4 633 aa9.79□□□□□ -0.84
SMCHD1-204ENST00000581226 ITGBL1O95965 494 aaPredicted RBP9.78□□□□□ -0.84
SMCHD1-204ENST00000581226 HRCP23327 699 aa9.78□□□□□ -0.84
SMCHD1-204ENST00000581226 KCNC4Q03721 635 aa9.78□□□□□ -0.84
SMCHD1-204ENST00000581226 THAP11Q96EK4 314 aa9.78□□□□□ -0.84
SMCHD1-204ENST00000581226 TLL1O43897 1013 aa9.77□□□□□ -0.85
SMCHD1-204ENST00000581226 SPSB2Q99619 263 aa9.77□□□□□ -0.85
SMCHD1-204ENST00000581226 IRX2Q9BZI1 471 aaPredicted RBP9.77□□□□□ -0.85
SMCHD1-204ENST00000581226 SPDYE5A6NIY4 337 aa9.76□□□□□ -0.85
SMCHD1-204ENST00000581226 RTL5Q5HYW3 569 aaPredicted RBP9.76□□□□□ -0.85
SMCHD1-204ENST00000581226 USB1Q9BQ65 265 aaKnown RBP9.76□□□□□ -0.85
SMCHD1-204ENST00000581226 FBXO31Q5XUX0 539 aaPredicted RBP9.75□□□□□ -0.85
SMCHD1-204ENST00000581226 RETREG3Q86VR2 466 aa9.75□□□□□ -0.85
SMCHD1-204ENST00000581226 NKX2-3Q8TAU0 364 aa9.75□□□□□ -0.85
SMCHD1-204ENST00000581226 RGS20O76081 388 aa9.74□□□□□ -0.85
SMCHD1-204ENST00000581226 ADH1BP00325 375 aa9.74□□□□□ -0.85
SMCHD1-204ENST00000581226 PPP2R2DQ66LE6 453 aa9.74□□□□□ -0.85
SMCHD1-204ENST00000581226 A0A0G2JS52 829 aa9.73□□□□□ -0.85
SMCHD1-204ENST00000581226 RFC5P40937 340 aa9.73□□□□□ -0.85
SMCHD1-204ENST00000581226 IFFO2Q5TF58 517 aa9.73□□□□□ -0.85
SMCHD1-204ENST00000581226 PRR7Q8TB68 274 aa9.73□□□□□ -0.85
SMCHD1-204ENST00000581226 FAM160A2Q8N612 972 aaPredicted RBP9.72□□□□□ -0.85
SMCHD1-204ENST00000581226 CFAP99D6REC4 459 aa9.71□□□□□ -0.86
SMCHD1-204ENST00000581226 TSC1Q92574 1164 aa9.71□□□□□ -0.86
SMCHD1-204ENST00000581226 MSS51Q4VC12 460 aa9.7□□□□□ -0.86
SMCHD1-204ENST00000581226 SLC6A16Q9GZN6 736 aa9.7□□□□□ -0.86
SMCHD1-204ENST00000581226 PRDM9Q9NQV7 894 aa9.69□□□□□ -0.86
SMCHD1-204ENST00000581226 AP1G2O75843 785 aa9.68□□□□□ -0.86
SMCHD1-204ENST00000581226 TMEM259Q4ZIN3 620 aa9.68□□□□□ -0.86
SMCHD1-204ENST00000581226 HELBQ8NG08 1087 aaPredicted RBP9.68□□□□□ -0.86
SMCHD1-204ENST00000581226 S1PR4O95977 384 aa9.67□□□□□ -0.86
SMCHD1-204ENST00000581226 GTF3C3Q9Y5Q9 886 aa9.67□□□□□ -0.86
SMCHD1-204ENST00000581226 JUNDP17535 347 aa9.66□□□□□ -0.86
SMCHD1-204ENST00000581226 DESI1Q6ICB0 168 aa9.66□□□□□ -0.86
SMCHD1-204ENST00000581226 GGCXP38435 758 aa9.65□□□□□ -0.86
SMCHD1-204ENST00000581226 MMP16P51512 607 aa9.65□□□□□ -0.86
SMCHD1-204ENST00000581226 CTDSPL2Q05D32 466 aa9.65□□□□□ -0.86
SMCHD1-204ENST00000581226 DXOO77932 396 aaKnown RBP9.64□□□□□ -0.87
SMCHD1-204ENST00000581226 PPP1R18Q6NYC8 613 aa9.63□□□□□ -0.87
SMCHD1-204ENST00000581226 LYPD8Q6UX82 237 aa9.63□□□□□ -0.87
SMCHD1-204ENST00000581226 PER1O15534 1290 aaPredicted RBP9.62□□□□□ -0.87
SMCHD1-204ENST00000581226 USP17L8P0C7I0 530 aa9.62□□□□□ -0.87
SMCHD1-204ENST00000581226 BANK1Q8NDB2 785 aa9.62□□□□□ -0.87
SMCHD1-204ENST00000581226 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.62□□□□□ -0.87
SMCHD1-204ENST00000581226 PPEF1O14829 653 aaPredicted RBP9.61□□□□□ -0.87
SMCHD1-204ENST00000581226 RNF223E7ERA6 249 aa9.6□□□□□ -0.87
SMCHD1-204ENST00000581226 PTPRNQ16849 979 aa9.6□□□□□ -0.87
SMCHD1-204ENST00000581226 CCDC24Q8N4L8 307 aa9.6□□□□□ -0.87
SMCHD1-204ENST00000581226 LRRN4Q8WUT4 740 aa9.6□□□□□ -0.87
SMCHD1-204ENST00000581226 NUDT12Q9BQG2 462 aa9.6□□□□□ -0.87
SMCHD1-204ENST00000581226 SNRKQ9NRH2 765 aa9.59□□□□□ -0.87
SMCHD1-204ENST00000581226 FCF1Q9Y324 198 aaKnown RBP9.59□□□□□ -0.87
SMCHD1-204ENST00000581226 CCNYL3P0C7X3 344 aa9.58□□□□□ -0.88
SMCHD1-204ENST00000581226 CTHP32929 405 aa9.57□□□□□ -0.88
SMCHD1-204ENST00000581226 FLIIQ13045 1269 aa9.57□□□□□ -0.88
SMCHD1-204ENST00000581226 ANKLE1Q8NAG6 615 aa9.57□□□□□ -0.88
SMCHD1-204ENST00000581226 EVA1BQ9NVM1 165 aa9.57□□□□□ -0.88
SMCHD1-204ENST00000581226 Q6ZNB5 142 aa9.56□□□□□ -0.88
SMCHD1-204ENST00000581226 HMX1Q9NP08 348 aaPredicted RBP9.56□□□□□ -0.88
SMCHD1-204ENST00000581226 KCNH2Q12809 1159 aa9.55□□□□□ -0.88
SMCHD1-204ENST00000581226 F12P00748 615 aaPredicted RBP9.54□□□□□ -0.88
SMCHD1-204ENST00000581226 MCM6Q14566 821 aa9.54□□□□□ -0.88
SMCHD1-204ENST00000581226 MTMR14Q8NCE2 650 aa9.54□□□□□ -0.88
SMCHD1-204ENST00000581226 MAP10Q9P2G4 905 aa9.54□□□□□ -0.88
SMCHD1-204ENST00000581226 NR6A1Q15406 480 aa9.53□□□□□ -0.88
SMCHD1-204ENST00000581226 PTCRAQ6ISU1 281 aaPredicted RBP9.53□□□□□ -0.88
SMCHD1-204ENST00000581226 APBB1O00213 710 aa9.52□□□□□ -0.89
SMCHD1-204ENST00000581226 ZBTB24O43167 697 aaPredicted RBP9.52□□□□□ -0.89
SMCHD1-204ENST00000581226 PLA2G2CQ5R387 149 aa9.52□□□□□ -0.89
SMCHD1-204ENST00000581226 EPS8L1Q8TE68 723 aa9.51□□□□□ -0.89
SMCHD1-204ENST00000581226 SOCS7O14512 581 aa9.5□□□□□ -0.89
SMCHD1-204ENST00000581226 GJD4Q96KN9 370 aaPredicted RBP9.5□□□□□ -0.89
SMCHD1-204ENST00000581226 TRIM34Q9BYJ4 488 aa9.5□□□□□ -0.89
SMCHD1-204ENST00000581226 UNC93B1Q9H1C4 597 aa9.5□□□□□ -0.89
SMCHD1-204ENST00000581226 UBTFP17480 764 aaKnown RBP9.49□□□□□ -0.89
SMCHD1-204ENST00000581226 PRM3Q9NNZ6 103 aa9.49□□□□□ -0.89
SMCHD1-204ENST00000581226 PNMA1Q8ND90 353 aa9.48□□□□□ -0.89
SMCHD1-204ENST00000581226 ARMC2Q8NEN0 867 aa9.48□□□□□ -0.89
SMCHD1-204ENST00000581226 NDUFB9Q9Y6M9 179 aa9.48□□□□□ -0.89
SMCHD1-204ENST00000581226 SLC19A1P41440 591 aa9.47□□□□□ -0.89
SMCHD1-204ENST00000581226 RPIAP49247 311 aa9.47□□□□□ -0.89
SMCHD1-204ENST00000581226 LIAT1Q6ZQX7 453 aa9.47□□□□□ -0.89
SMCHD1-204ENST00000581226 BAP1Q92560 729 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms