RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 IDI1Q13907 227 aa13.66□□□□□ -0.22
TOP3A-209ENST00000580095 TRMT2AQ8IZ69 625 aaKnown RBP13.66□□□□□ -0.22
TOP3A-209ENST00000580095 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.65□□□□□ -0.22
TOP3A-209ENST00000580095 E9PSI1 815 aa13.65□□□□□ -0.22
TOP3A-209ENST00000580095 MS4A1P11836 297 aa13.65□□□□□ -0.22
TOP3A-209ENST00000580095 CANXP27824 592 aaKnown RBP13.65□□□□□ -0.22
TOP3A-209ENST00000580095 TCP11L2Q8N4U5 519 aa13.65□□□□□ -0.22
TOP3A-209ENST00000580095 PKNOX2Q96KN3 472 aa13.65□□□□□ -0.22
TOP3A-209ENST00000580095 TNNQ9UQP3 1299 aa13.65□□□□□ -0.22
TOP3A-209ENST00000580095 FRMPD1Q5SYB0 1578 aa13.65□□□□□ -0.23
TOP3A-209ENST00000580095 COG6Q9Y2V7 657 aa13.64□□□□□ -0.23
TOP3A-209ENST00000580095 KIF1BO60333 1816 aa13.64□□□□□ -0.23
TOP3A-209ENST00000580095 NEO1Q92859 1461 aa13.63□□□□□ -0.23
TOP3A-209ENST00000580095 FBXO31Q5XUX0 539 aaPredicted RBP13.63□□□□□ -0.23
TOP3A-209ENST00000580095 SRPK2P78362 688 aaKnown RBP13.63□□□□□ -0.23
TOP3A-209ENST00000580095 CENPQQ7L2Z9 268 aaPredicted RBP13.63□□□□□ -0.23
TOP3A-209ENST00000580095 NKTRP30414 1462 aaKnown RBP13.62□□□□□ -0.23
TOP3A-209ENST00000580095 ADGRB3O60242 1522 aa13.62□□□□□ -0.23
TOP3A-209ENST00000580095 IGHDP01880 384 aa13.62□□□□□ -0.23
TOP3A-209ENST00000580095 NRXN1Q9ULB1 1477 aa13.62□□□□□ -0.23
TOP3A-209ENST00000580095 MINK1Q8N4C8 1332 aaPredicted RBP13.62□□□□□ -0.23
TOP3A-209ENST00000580095 U2AF1L5P0DN76 240 aaPredicted RBP13.62□□□□□ -0.23
TOP3A-209ENST00000580095 U2AF1Q01081 240 aaKnown RBP eCLIP13.62□□□□□ -0.23
TOP3A-209ENST00000580095 CLUAP1Q96AJ1 413 aa13.62□□□□□ -0.23
TOP3A-209ENST00000580095 GGNBP2Q9H3C7 697 aa13.62□□□□□ -0.23
TOP3A-209ENST00000580095 KIF13AQ9H1H9 1805 aa13.62□□□□□ -0.23
TOP3A-209ENST00000580095 VGFO15240 615 aaPredicted RBP13.61□□□□□ -0.23
TOP3A-209ENST00000580095 CGNL1Q0VF96 1302 aa13.61□□□□□ -0.23
TOP3A-209ENST00000580095 KIAA1210Q9ULL0 1709 aa13.6□□□□□ -0.23
TOP3A-209ENST00000580095 YEATS2Q9ULM3 1422 aa13.6□□□□□ -0.23
TOP3A-209ENST00000580095 U2SURPO15042 1029 aaKnown RBP13.6□□□□□ -0.23
TOP3A-209ENST00000580095 EVC2Q86UK5 1308 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 POLR3AO14802 1390 aaPredicted RBP13.59□□□□□ -0.23
TOP3A-209ENST00000580095 FBLN1P23142 703 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 RUNDC1Q96C34 613 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 ABCC3O15438 1527 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 SBNO2Q9Y2G9 1366 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 ADGRB1O14514 1584 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 MLH3Q9UHC1 1453 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 RTL5Q5HYW3 569 aaPredicted RBP13.59□□□□□ -0.23
TOP3A-209ENST00000580095 LMTK2Q8IWU2 1503 aa13.59□□□□□ -0.23
TOP3A-209ENST00000580095 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.58□□□□□ -0.24
TOP3A-209ENST00000580095 RLBP1P12271 317 aa13.58□□□□□ -0.24
TOP3A-209ENST00000580095 C8orf34Q49A92 452 aa13.57□□□□□ -0.24
TOP3A-209ENST00000580095 PRAM1Q96QH2 718 aa13.57□□□□□ -0.24
TOP3A-209ENST00000580095 TSR2Q969E8 191 aaKnown RBP13.57□□□□□ -0.24
TOP3A-209ENST00000580095 IFT172Q9UG01 1749 aa13.57□□□□□ -0.24
TOP3A-209ENST00000580095 NEFMP07197 916 aa13.57□□□□□ -0.24
TOP3A-209ENST00000580095 MLECQ14165 292 aa13.56□□□□□ -0.24
TOP3A-209ENST00000580095 RPGRIP1LQ68CZ1 1315 aa13.56□□□□□ -0.24
TOP3A-209ENST00000580095 CFAP53Q96M91 514 aa13.56□□□□□ -0.24
TOP3A-209ENST00000580095 POGKQ9P215 609 aa13.56□□□□□ -0.24
TOP3A-209ENST00000580095 HECW2Q9P2P5 1572 aa13.56□□□□□ -0.24
TOP3A-209ENST00000580095 RARSP54136 660 aaKnown RBP13.56□□□□□ -0.24
TOP3A-209ENST00000580095 STAG3Q9UJ98 1225 aa13.55□□□□□ -0.24
TOP3A-209ENST00000580095 PPM1GO15355 546 aaPredicted RBP13.55□□□□□ -0.24
TOP3A-209ENST00000580095 QRICH2Q9H0J4 1663 aa13.55□□□□□ -0.24
TOP3A-209ENST00000580095 NEURL4Q96JN8 1562 aa13.55□□□□□ -0.24
TOP3A-209ENST00000580095 FAM161AQ3B820 660 aa13.54□□□□□ -0.24
TOP3A-209ENST00000580095 SIGLEC1Q9BZZ2 1709 aa13.54□□□□□ -0.24
TOP3A-209ENST00000580095 PODXL2Q9NZ53 605 aa13.54□□□□□ -0.24
TOP3A-209ENST00000580095 A0A1W2PP64 1363 aa13.53□□□□□ -0.24
TOP3A-209ENST00000580095 TULP4Q9NRJ4 1543 aa13.53□□□□□ -0.24
TOP3A-209ENST00000580095 PPLO60437 1756 aa13.53□□□□□ -0.24
TOP3A-209ENST00000580095 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.53□□□□□ -0.24
TOP3A-209ENST00000580095 SETBP1Q9Y6X0 1596 aa13.52□□□□□ -0.24
TOP3A-209ENST00000580095 WAPLQ7Z5K2 1190 aa13.52□□□□□ -0.25
TOP3A-209ENST00000580095 PCDHB15Q9Y5E8 787 aa13.52□□□□□ -0.25
TOP3A-209ENST00000580095 ANKRD36BQ8N2N9 1353 aa13.52□□□□□ -0.25
TOP3A-209ENST00000580095 MYO3AQ8NEV4 1616 aa13.51□□□□□ -0.25
TOP3A-209ENST00000580095 FYB1O15117 783 aa13.51□□□□□ -0.25
TOP3A-209ENST00000580095 SEC24BO95487 1268 aa13.51□□□□□ -0.25
TOP3A-209ENST00000580095 FAM69CQ0P6D2 419 aa13.51□□□□□ -0.25
TOP3A-209ENST00000580095 PDE3AQ14432 1141 aa13.51□□□□□ -0.25
TOP3A-209ENST00000580095 CABP1Q9NZU7 370 aa13.51□□□□□ -0.25
TOP3A-209ENST00000580095 RICTORQ6R327 1708 aa13.5□□□□□ -0.25
TOP3A-209ENST00000580095 SLC52A1Q9NWF4 448 aa13.5□□□□□ -0.25
TOP3A-209ENST00000580095 NEXMIFQ5QGS0 1516 aa13.5□□□□□ -0.25
TOP3A-209ENST00000580095 CAMSAP1Q5T5Y3 1602 aa13.49□□□□□ -0.25
TOP3A-209ENST00000580095 PHF23Q9BUL5 403 aaPredicted RBP13.49□□□□□ -0.25
TOP3A-209ENST00000580095 CDK19Q9BWU1 502 aa13.49□□□□□ -0.25
TOP3A-209ENST00000580095 DIP2CQ9Y2E4 1556 aa13.49□□□□□ -0.25
TOP3A-209ENST00000580095 SHPRHQ149N8 1683 aa13.48□□□□□ -0.25
TOP3A-209ENST00000580095 EXOSC9Q06265 439 aaKnown RBP13.48□□□□□ -0.25
TOP3A-209ENST00000580095 WDR63Q8IWG1 891 aa13.48□□□□□ -0.25
TOP3A-209ENST00000580095 NGEFQ8N5V2 710 aa13.48□□□□□ -0.25
TOP3A-209ENST00000580095 DDRGK1Q96HY6 314 aa13.47□□□□□ -0.25
TOP3A-209ENST00000580095 IQSEC2Q5JU85 1478 aa13.46□□□□□ -0.25
TOP3A-209ENST00000580095 TMPOP42166 694 aaKnown RBP13.46□□□□□ -0.25
TOP3A-209ENST00000580095 MYH16Q9H6N6 1097 aa13.46□□□□□ -0.25
TOP3A-209ENST00000580095 TERF2IPQ9NYB0 399 aa13.46□□□□□ -0.25
TOP3A-209ENST00000580095 SMC4Q9NTJ3 1288 aa13.46□□□□□ -0.26
TOP3A-209ENST00000580095 TRIM35Q9UPQ4 493 aa13.46□□□□□ -0.26
TOP3A-209ENST00000580095 NCKAP5LQ9HCH0 1330 aa13.46□□□□□ -0.26
TOP3A-209ENST00000580095 MAPK8IP3Q9UPT6 1336 aa13.45□□□□□ -0.26
TOP3A-209ENST00000580095 PIK3C2BO00750 1634 aa13.45□□□□□ -0.26
TOP3A-209ENST00000580095 ZC3H13Q5T200 1668 aaKnown RBP13.45□□□□□ -0.26
TOP3A-209ENST00000580095 RIPK4P57078 832 aa13.45□□□□□ -0.26
TOP3A-209ENST00000580095 FTSJ3Q8IY81 847 aaKnown RBP13.45□□□□□ -0.26
TOP3A-209ENST00000580095 PLEKHF1Q96S99 279 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 664.9 ms