RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 RBM33Q96EV2 1170 aaKnown RBP34.82■■■■□ 3.17
SHMT1-207ENST00000580002 CABP2Q9NPB3 220 aa34.82■■■■□ 3.16
SHMT1-207ENST00000580002 XRN1Q8IZH2 1706 aaKnown RBP34.8■■■■□ 3.16
SHMT1-207ENST00000580002 CHD2O14647 1828 aaKnown RBP34.79■■■■□ 3.16
SHMT1-207ENST00000580002 EVC2Q86UK5 1308 aa34.78■■■■□ 3.16
SHMT1-207ENST00000580002 CDK19Q9BWU1 502 aa34.77■■■■□ 3.16
SHMT1-207ENST00000580002 SLC24A1O60721 1099 aa34.75■■■■□ 3.15
SHMT1-207ENST00000580002 CDCA8Q53HL2 280 aa34.75■■■■□ 3.15
SHMT1-207ENST00000580002 PTCH1Q13635 1447 aa34.75■■■■□ 3.15
SHMT1-207ENST00000580002 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.75■■■■□ 3.15
SHMT1-207ENST00000580002 SRPK2P78362 688 aaKnown RBP34.72■■■■□ 3.15
SHMT1-207ENST00000580002 MIER1Q8N108 512 aa34.72■■■■□ 3.15
SHMT1-207ENST00000580002 PANK3Q9H999 370 aa34.69■■■■□ 3.14
SHMT1-207ENST00000580002 WASLO00401 505 aaPredicted RBP34.69■■■■□ 3.14
SHMT1-207ENST00000580002 SLC12A5Q9H2X9 1139 aa34.68■■■■□ 3.14
SHMT1-207ENST00000580002 TMC1Q8TDI8 760 aa34.66■■■■□ 3.14
SHMT1-207ENST00000580002 MYOM1P52179 1685 aa34.64■■■■□ 3.14
SHMT1-207ENST00000580002 CNGB1Q14028 1251 aaPredicted RBP34.64■■■■□ 3.14
SHMT1-207ENST00000580002 STRCP1A6NGW2 1772 aa34.63■■■■□ 3.13
SHMT1-207ENST00000580002 NUTM2FA1L443 756 aa34.63■■■■□ 3.13
SHMT1-207ENST00000580002 NWD1Q149M9 1564 aa34.62■■■■□ 3.13
SHMT1-207ENST00000580002 PUS7Q96PZ0 661 aaKnown RBP34.61■■■■□ 3.13
SHMT1-207ENST00000580002 PROSER2Q86WR7 435 aaPredicted RBP34.6■■■■□ 3.13
SHMT1-207ENST00000580002 PER1O15534 1290 aaPredicted RBP34.59■■■■□ 3.13
SHMT1-207ENST00000580002 ZNF335Q9H4Z2 1342 aaPredicted RBP34.59■■■■□ 3.13
SHMT1-207ENST00000580002 PRR36Q9H6K5 1346 aa34.58■■■■□ 3.13
SHMT1-207ENST00000580002 NUDT16Q96DE0 195 aaKnown RBP34.56■■■■□ 3.12
SHMT1-207ENST00000580002 CARD14Q9BXL6 1004 aa34.56■■■■□ 3.12
SHMT1-207ENST00000580002 CABP1Q9NZU7 370 aa34.55■■■■□ 3.12
SHMT1-207ENST00000580002 ADGRB2O60241 1585 aa34.55■■■■□ 3.12
SHMT1-207ENST00000580002 ATAD2Q6PL18 1390 aa34.52■■■■□ 3.12
SHMT1-207ENST00000580002 NALCNQ8IZF0 1738 aa34.5■■■■□ 3.11
SHMT1-207ENST00000580002 C14orf37Q86TY3 774 aa34.49■■■■□ 3.11
SHMT1-207ENST00000580002 ANP32CO43423 234 aa34.49■■■■□ 3.11
SHMT1-207ENST00000580002 TMEM94Q12767 1356 aa34.48■■■■□ 3.11
SHMT1-207ENST00000580002 NKTRP30414 1462 aaKnown RBP34.48■■■■□ 3.11
SHMT1-207ENST00000580002 AEBP2Q6ZN18 517 aaPredicted RBP34.48■■■■□ 3.11
SHMT1-207ENST00000580002 DMRT2Q9Y5R5 561 aa34.47■■■■□ 3.11
SHMT1-207ENST00000580002 ATP7BP35670 1465 aa34.47■■■■□ 3.11
SHMT1-207ENST00000580002 ADGRL3Q9HAR2 1447 aa34.46■■■■□ 3.11
SHMT1-207ENST00000580002 CD163L1Q9NR16 1453 aa34.45■■■■□ 3.11
SHMT1-207ENST00000580002 CCDC61Q9Y6R9 512 aa34.44■■■■□ 3.1
SHMT1-207ENST00000580002 PPIP5K1Q6PFW1 1433 aa34.44■■■■□ 3.1
SHMT1-207ENST00000580002 PRKRIP1Q9H875 184 aaPredicted RBP34.42■■■■□ 3.1
SHMT1-207ENST00000580002 USP32Q8NFA0 1604 aa34.42■■■■□ 3.1
SHMT1-207ENST00000580002 A0A1W2PP64 1363 aa34.42■■■■□ 3.1
SHMT1-207ENST00000580002 CC2D1BQ5T0F9 858 aaKnown RBP34.41■■■■□ 3.1
SHMT1-207ENST00000580002 KNSTRNQ9Y448 316 aa34.41■■■■□ 3.1
SHMT1-207ENST00000580002 ANKRD36BQ8N2N9 1353 aa34.4■■■■□ 3.1
SHMT1-207ENST00000580002 AMER1Q5JTC6 1135 aaPredicted RBP34.39■■■■□ 3.1
SHMT1-207ENST00000580002 NSD3Q9BZ95 1437 aa34.38■■■■□ 3.09
SHMT1-207ENST00000580002 PMFBP1Q8TBY8 1022 aa34.37■■■■□ 3.09
SHMT1-207ENST00000580002 NINLQ9Y2I6 1382 aa34.37■■■■□ 3.09
SHMT1-207ENST00000580002 LRRC7Q96NW7 1537 aa34.36■■■■□ 3.09
SHMT1-207ENST00000580002 RGPD8O14715 1765 aaPredicted RBP34.36■■■■□ 3.09
SHMT1-207ENST00000580002 C19orf44Q9H6X5 657 aa34.36■■■■□ 3.09
SHMT1-207ENST00000580002 CDC42BPGQ6DT37 1551 aa34.35■■■■□ 3.09
SHMT1-207ENST00000580002 FMN2Q9NZ56 1722 aa34.35■■■■□ 3.09
SHMT1-207ENST00000580002 TERF2IPQ9NYB0 399 aa34.34■■■■□ 3.09
SHMT1-207ENST00000580002 PLEKHG3A1L390 1219 aa34.31■■■■□ 3.08
SHMT1-207ENST00000580002 HDGFL2Q7Z4V5 671 aaPredicted RBP34.31■■■■□ 3.08
SHMT1-207ENST00000580002 XIRP1Q702N8 1843 aaKnown RBP34.31■■■■□ 3.08
SHMT1-207ENST00000580002 ACEP12821 1306 aa34.3■■■■□ 3.08
SHMT1-207ENST00000580002 TOPAZ1Q8N9V7 1692 aa34.3■■■■□ 3.08
SHMT1-207ENST00000580002 CPSF1Q10570 1443 aaKnown RBP34.29■■■■□ 3.08
SHMT1-207ENST00000580002 CCDC184Q52MB2 194 aa34.28■■■■□ 3.08
SHMT1-207ENST00000580002 ANKARQ7Z5J8 1434 aa34.28■■■■□ 3.08
SHMT1-207ENST00000580002 ORAI2Q96SN7 254 aa34.26■■■■□ 3.08
SHMT1-207ENST00000580002 KTN1Q86UP2 1357 aaKnown RBP34.26■■■■□ 3.08
SHMT1-207ENST00000580002 NCOA3Q9Y6Q9 1424 aa34.26■■■■□ 3.08
SHMT1-207ENST00000580002 ESCO1Q5FWF5 840 aa34.24■■■■□ 3.07
SHMT1-207ENST00000580002 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.24■■■■□ 3.07
SHMT1-207ENST00000580002 ATF3P18847 181 aa34.23■■■■□ 3.07
SHMT1-207ENST00000580002 PARD3Q8TEW0 1356 aa34.22■■■■□ 3.07
SHMT1-207ENST00000580002 NGDNQ8NEJ9 315 aaKnown RBP34.21■■■■□ 3.07
SHMT1-207ENST00000580002 PHF8Q9UPP1 1060 aa34.21■■■■□ 3.07
SHMT1-207ENST00000580002 MSH6P52701 1360 aa34.2■■■■□ 3.07
SHMT1-207ENST00000580002 FYB1O15117 783 aa34.19■■■■□ 3.06
SHMT1-207ENST00000580002 GGNBP2Q9H3C7 697 aa34.19■■■■□ 3.06
SHMT1-207ENST00000580002 CGNL1Q0VF96 1302 aa34.19■■■■□ 3.06
SHMT1-207ENST00000580002 RALBP1Q15311 655 aa34.18■■■■□ 3.06
SHMT1-207ENST00000580002 C1orf167Q5SNV9 1468 aa34.18■■■■□ 3.06
SHMT1-207ENST00000580002 NPC1L1Q9UHC9 1359 aa34.18■■■■□ 3.06
SHMT1-207ENST00000580002 MST1RQ04912 1400 aa34.17■■■■□ 3.06
SHMT1-207ENST00000580002 ZNF692Q9BU19 519 aaPredicted RBP34.17■■■■□ 3.06
SHMT1-207ENST00000580002 ZRANB1Q9UGI0 708 aa34.17■■■■□ 3.06
SHMT1-207ENST00000580002 POLR3AO14802 1390 aaPredicted RBP34.17■■■■□ 3.06
SHMT1-207ENST00000580002 LTBP4Q8N2S1 1624 aa34.17■■■■□ 3.06
SHMT1-207ENST00000580002 AKAP12Q02952 1782 aa34.16■■■■□ 3.06
SHMT1-207ENST00000580002 ITSN1Q15811 1721 aa34.15■■■■□ 3.06
SHMT1-207ENST00000580002 CCER2I3L3R5 266 aa34.15■■■■□ 3.06
SHMT1-207ENST00000580002 CADPS2Q86UW7 1296 aa34.15■■■■□ 3.06
SHMT1-207ENST00000580002 NME9Q86XW9 330 aa34.15■■■■□ 3.06
SHMT1-207ENST00000580002 DCCP43146 1447 aa34.14■■■■□ 3.06
SHMT1-207ENST00000580002 USP6P35125 1406 aa34.13■■■■□ 3.05
SHMT1-207ENST00000580002 EDC4Q6P2E9 1401 aaKnown RBP34.13■■■■□ 3.05
SHMT1-207ENST00000580002 TNNT2P45379 298 aaPredicted RBP34.13■■■■□ 3.05
SHMT1-207ENST00000580002 MON2Q7Z3U7 1717 aa34.12■■■■□ 3.05
SHMT1-207ENST00000580002 TTC21BQ7Z4L5 1316 aa34.11■■■■□ 3.05
SHMT1-207ENST00000580002 FOXO3O43524 673 aa34.11■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms