RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 RNF19BQ6ZMZ0 732 aa10.6□□□□□ -0.71
COPS3-216ENST00000579716 CRIPAKQ8N1N5 446 aa10.6□□□□□ -0.71
COPS3-216ENST00000579716 SALL2Q9Y467 1007 aaPredicted RBP10.6□□□□□ -0.71
COPS3-216ENST00000579716 RSPH4AQ5TD94 716 aa10.59□□□□□ -0.71
COPS3-216ENST00000579716 LMOD2Q6P5Q4 547 aa10.59□□□□□ -0.71
COPS3-216ENST00000579716 FMNL1O95466 1100 aaPredicted RBP10.57□□□□□ -0.72
COPS3-216ENST00000579716 TMEM132AQ24JP5 1023 aa10.57□□□□□ -0.72
COPS3-216ENST00000579716 TREML4Q6UXN2 200 aa10.57□□□□□ -0.72
COPS3-216ENST00000579716 C14orf37Q86TY3 774 aa10.55□□□□□ -0.72
COPS3-216ENST00000579716 CD2BP2O95400 341 aaKnown RBP10.54□□□□□ -0.72
COPS3-216ENST00000579716 GMPR2Q9P2T1 348 aaKnown RBP10.54□□□□□ -0.72
COPS3-216ENST00000579716 MSS51Q4VC12 460 aa10.53□□□□□ -0.72
COPS3-216ENST00000579716 SMYD5Q6GMV2 418 aa10.52□□□□□ -0.73
COPS3-216ENST00000579716 SMCPP49901 116 aaPredicted RBP10.51□□□□□ -0.73
COPS3-216ENST00000579716 LCE2CQ5TA81 110 aa10.51□□□□□ -0.73
COPS3-216ENST00000579716 CD46P15529 392 aa10.5□□□□□ -0.73
COPS3-216ENST00000579716 SMPD1P17405 629 aa10.5□□□□□ -0.73
COPS3-216ENST00000579716 MMP16P51512 607 aa10.5□□□□□ -0.73
COPS3-216ENST00000579716 SULF1Q8IWU6 871 aa10.5□□□□□ -0.73
COPS3-216ENST00000579716 HLA-CQ95604 372 aa10.5□□□□□ -0.73
COPS3-216ENST00000579716 KDM2AQ9Y2K7 1162 aa10.5□□□□□ -0.73
COPS3-216ENST00000579716 CYP4X1Q8N118 509 aa10.49□□□□□ -0.73
COPS3-216ENST00000579716 AXIN1O15169 862 aa10.47□□□□□ -0.73
COPS3-216ENST00000579716 J3QL48 77 aa10.46□□□□□ -0.73
COPS3-216ENST00000579716 WNT7AO00755 349 aa10.46□□□□□ -0.73
COPS3-216ENST00000579716 NFX1Q12986 1120 aaKnown RBP10.46□□□□□ -0.73
COPS3-216ENST00000579716 TRIM32Q13049 653 aa10.45□□□□□ -0.74
COPS3-216ENST00000579716 CTC1Q2NKJ3 1217 aa10.45□□□□□ -0.74
COPS3-216ENST00000579716 GPIHBP1Q8IV16 184 aa10.45□□□□□ -0.74
COPS3-216ENST00000579716 DXOO77932 396 aaKnown RBP10.44□□□□□ -0.74
COPS3-216ENST00000579716 SKOR1P84550 965 aa10.44□□□□□ -0.74
COPS3-216ENST00000579716 MRGPRX2Q96LB1 330 aa10.44□□□□□ -0.74
COPS3-216ENST00000579716 C11orf95C9JLR9 678 aaPredicted RBP10.43□□□□□ -0.74
COPS3-216ENST00000579716 SNIP1Q8TAD8 396 aaKnown RBP10.43□□□□□ -0.74
COPS3-216ENST00000579716 IRF6O14896 467 aa10.42□□□□□ -0.74
COPS3-216ENST00000579716 SNRPBP14678 240 aaKnown RBP10.42□□□□□ -0.74
COPS3-216ENST00000579716 TTC24A2A3L6 582 aaPredicted RBP10.41□□□□□ -0.74
COPS3-216ENST00000579716 KDM4AO75164 1064 aa10.41□□□□□ -0.74
COPS3-216ENST00000579716 USB1Q9BQ65 265 aaKnown RBP10.41□□□□□ -0.74
COPS3-216ENST00000579716 ZBTB24O43167 697 aaPredicted RBP10.4□□□□□ -0.74
COPS3-216ENST00000579716 GUCA2AQ02747 115 aa10.4□□□□□ -0.74
COPS3-216ENST00000579716 MAP2K5Q13163 448 aa10.4□□□□□ -0.74
COPS3-216ENST00000579716 HPS1Q92902 700 aa10.4□□□□□ -0.74
COPS3-216ENST00000579716 WFS1O76024 890 aa10.39□□□□□ -0.75
COPS3-216ENST00000579716 ATP13A2Q9NQ11 1180 aa10.39□□□□□ -0.75
COPS3-216ENST00000579716 MDM2Q00987 491 aaPredicted RBP10.38□□□□□ -0.75
COPS3-216ENST00000579716 Q3C1V9 767 aa10.38□□□□□ -0.75
COPS3-216ENST00000579716 GRIPAP1Q4V328 841 aa10.38□□□□□ -0.75
COPS3-216ENST00000579716 SYMPKQ92797 1274 aaKnown RBP10.38□□□□□ -0.75
COPS3-216ENST00000579716 HOXA2O43364 376 aa10.36□□□□□ -0.75
COPS3-216ENST00000579716 PTCRAQ6ISU1 281 aaPredicted RBP10.36□□□□□ -0.75
COPS3-216ENST00000579716 RC3H1Q5TC82 1133 aaKnown RBP10.35□□□□□ -0.75
COPS3-216ENST00000579716 WIPF1O43516 503 aa10.34□□□□□ -0.75
COPS3-216ENST00000579716 REPIN1Q9BWE0 567 aaKnown RBP10.34□□□□□ -0.75
COPS3-216ENST00000579716 SIAH2O43255 324 aa10.33□□□□□ -0.76
COPS3-216ENST00000579716 TRIM47Q96LD4 638 aa10.32□□□□□ -0.76
COPS3-216ENST00000579716 MINK1Q8N4C8 1332 aaPredicted RBP10.32□□□□□ -0.76
COPS3-216ENST00000579716 CCDC24Q8N4L8 307 aa10.31□□□□□ -0.76
COPS3-216ENST00000579716 FAM217BQ9NTX9 383 aaPredicted RBP10.31□□□□□ -0.76
COPS3-216ENST00000579716 PCDHGC3Q9UN70 934 aa10.31□□□□□ -0.76
COPS3-216ENST00000579716 USP46P62068 366 aa10.3□□□□□ -0.76
COPS3-216ENST00000579716 CCDC102AQ96A19 550 aa10.3□□□□□ -0.76
COPS3-216ENST00000579716 TERTO14746 1132 aaKnown RBP10.29□□□□□ -0.76
COPS3-216ENST00000579716 WNT7BP56706 349 aa10.29□□□□□ -0.76
COPS3-216ENST00000579716 TRIM26Q12899 539 aaPredicted RBP10.29□□□□□ -0.76
COPS3-216ENST00000579716 JUNDP17535 347 aa10.28□□□□□ -0.76
COPS3-216ENST00000579716 GPCPD1Q9NPB8 672 aa10.25□□□□□ -0.77
COPS3-216ENST00000579716 LORP23490 312 aaPredicted RBP10.24□□□□□ -0.77
COPS3-216ENST00000579716 TRIM46Q7Z4K8 759 aa10.24□□□□□ -0.77
COPS3-216ENST00000579716 ALDH1A1P00352 501 aa10.23□□□□□ -0.77
COPS3-216ENST00000579716 RETREG3Q86VR2 466 aa10.23□□□□□ -0.77
COPS3-216ENST00000579716 SH3BP2P78314 561 aa10.22□□□□□ -0.77
COPS3-216ENST00000579716 SENP2Q9HC62 589 aa10.22□□□□□ -0.77
COPS3-216ENST00000579716 NUDT12Q9BQG2 462 aa10.21□□□□□ -0.77
COPS3-216ENST00000579716 SUPT5HO00267 1087 aaKnown RBP10.2□□□□□ -0.78
COPS3-216ENST00000579716 CLCN1P35523 988 aa10.2□□□□□ -0.78
COPS3-216ENST00000579716 STK17AQ9UEE5 414 aa10.2□□□□□ -0.78
COPS3-216ENST00000579716 FDX1P10109 184 aa10.19□□□□□ -0.78
COPS3-216ENST00000579716 BMP1P13497 986 aa10.19□□□□□ -0.78
COPS3-216ENST00000579716 NDUFV2P19404 249 aa10.19□□□□□ -0.78
COPS3-216ENST00000579716 SPIRE2Q8WWL2 714 aa10.19□□□□□ -0.78
COPS3-216ENST00000579716 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.18□□□□□ -0.78
COPS3-216ENST00000579716 KIFC2Q96AC6 838 aa10.17□□□□□ -0.78
COPS3-216ENST00000579716 EVA1BQ9NVM1 165 aa10.17□□□□□ -0.78
COPS3-216ENST00000579716 MOXD2PA6NHM9 499 aa10.16□□□□□ -0.78
COPS3-216ENST00000579716 HMGB1P09429 215 aaKnown RBP10.16□□□□□ -0.78
COPS3-216ENST00000579716 SSTR3P32745 418 aaPredicted RBP10.16□□□□□ -0.78
COPS3-216ENST00000579716 INSM1Q01101 510 aaPredicted RBP10.16□□□□□ -0.78
COPS3-216ENST00000579716 NUTM1Q86Y26 1132 aa10.15□□□□□ -0.78
COPS3-216ENST00000579716 EHBP1Q8NDI1 1231 aa10.15□□□□□ -0.78
COPS3-216ENST00000579716 CDK11AQ9UQ88 783 aaPredicted RBP10.15□□□□□ -0.78
COPS3-216ENST00000579716 CCNYL3P0C7X3 344 aa10.14□□□□□ -0.79
COPS3-216ENST00000579716 BAP1Q92560 729 aa10.14□□□□□ -0.79
COPS3-216ENST00000579716 C6orf229H3BNL8 230 aa10.13□□□□□ -0.79
COPS3-216ENST00000579716 CAPN5O15484 640 aaPredicted RBP10.13□□□□□ -0.79
COPS3-216ENST00000579716 MS4A1P11836 297 aa10.13□□□□□ -0.79
COPS3-216ENST00000579716 UNC93B1Q9H1C4 597 aa10.13□□□□□ -0.79
COPS3-216ENST00000579716 NXF1Q9UBU9 619 aaKnown RBP10.13□□□□□ -0.79
COPS3-216ENST00000579716 HRCP23327 699 aa10.12□□□□□ -0.79
COPS3-216ENST00000579716 GMPRP36959 345 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms