RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 CC2D2AQ9P2K1 1620 aa12.62□□□□□ -0.39
PTPRM-205ENST00000577827 TNNT3P45378 269 aaPredicted RBP12.62□□□□□ -0.39
PTPRM-205ENST00000577827 CAVIN1Q6NZI2 390 aaKnown RBP12.62□□□□□ -0.39
PTPRM-205ENST00000577827 NUTM2DQ5VT03 806 aaPredicted RBP12.62□□□□□ -0.39
PTPRM-205ENST00000577827 LRPPRCP42704 1394 aaKnown RBP12.62□□□□□ -0.39
PTPRM-205ENST00000577827 LMOD2Q6P5Q4 547 aa12.62□□□□□ -0.39
PTPRM-205ENST00000577827 THOC2Q8NI27 1593 aaKnown RBP12.61□□□□□ -0.39
PTPRM-205ENST00000577827 ARHGAP5Q13017 1502 aa12.61□□□□□ -0.39
PTPRM-205ENST00000577827 AMPHP49418 695 aa12.61□□□□□ -0.39
PTPRM-205ENST00000577827 CFAP70Q5T0N1 1121 aa12.61□□□□□ -0.39
PTPRM-205ENST00000577827 WWC1Q8IX03 1113 aa12.61□□□□□ -0.39
PTPRM-205ENST00000577827 SMC3Q9UQE7 1217 aa12.61□□□□□ -0.39
PTPRM-205ENST00000577827 MINK1Q8N4C8 1332 aaPredicted RBP12.61□□□□□ -0.39
PTPRM-205ENST00000577827 H3BQV1 296 aa12.6□□□□□ -0.39
PTPRM-205ENST00000577827 IFFO2Q5TF58 517 aa12.6□□□□□ -0.39
PTPRM-205ENST00000577827 HSP90AB4PQ58FF6 505 aa12.6□□□□□ -0.39
PTPRM-205ENST00000577827 CDK13Q14004 1512 aaKnown RBP12.6□□□□□ -0.39
PTPRM-205ENST00000577827 SF3A1Q15459 793 aaKnown RBP12.6□□□□□ -0.39
PTPRM-205ENST00000577827 DUSP27Q5VZP5 1158 aa12.6□□□□□ -0.39
PTPRM-205ENST00000577827 FOXD4L6Q3SYB3 417 aaPredicted RBP12.59□□□□□ -0.39
PTPRM-205ENST00000577827 C20orf194Q5TEA3 1177 aa12.59□□□□□ -0.39
PTPRM-205ENST00000577827 FOXD4L3Q6VB84 417 aaPredicted RBP12.59□□□□□ -0.39
PTPRM-205ENST00000577827 FAM184AQ8NB25 1140 aa12.59□□□□□ -0.39
PTPRM-205ENST00000577827 TAOK2Q9UL54 1235 aa12.59□□□□□ -0.39
PTPRM-205ENST00000577827 RNF20Q5VTR2 975 aa12.59□□□□□ -0.39
PTPRM-205ENST00000577827 CHD1LQ86WJ1 897 aa12.58□□□□□ -0.39
PTPRM-205ENST00000577827 TSPY26PQ9H489 355 aa12.58□□□□□ -0.39
PTPRM-205ENST00000577827 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.58□□□□□ -0.39
PTPRM-205ENST00000577827 KIAA0586Q9BVV6 1533 aa12.58□□□□□ -0.39
PTPRM-205ENST00000577827 GOLGA6L1Q8N7Z2 621 aa12.58□□□□□ -0.4
PTPRM-205ENST00000577827 PKNOX2Q96KN3 472 aa12.58□□□□□ -0.4
PTPRM-205ENST00000577827 NOB1Q9ULX3 412 aaKnown RBP12.58□□□□□ -0.4
PTPRM-205ENST00000577827 IQGAP2Q13576 1575 aa12.58□□□□□ -0.4
PTPRM-205ENST00000577827 ZSCAN30Q86W11 494 aa12.58□□□□□ -0.4
PTPRM-205ENST00000577827 GGNBP2Q9H3C7 697 aa12.58□□□□□ -0.4
PTPRM-205ENST00000577827 CAMSAP2Q08AD1 1489 aa12.58□□□□□ -0.4
PTPRM-205ENST00000577827 ZNF771Q7L3S4 317 aaPredicted RBP12.57□□□□□ -0.4
PTPRM-205ENST00000577827 BICRAQ9NZM4 1560 aa12.57□□□□□ -0.4
PTPRM-205ENST00000577827 CCDC141Q6ZP82 1450 aa12.57□□□□□ -0.4
PTPRM-205ENST00000577827 PRPF40AO75400 957 aaKnown RBP12.57□□□□□ -0.4
PTPRM-205ENST00000577827 MLECQ14165 292 aa12.57□□□□□ -0.4
PTPRM-205ENST00000577827 NGDNQ8NEJ9 315 aaKnown RBP12.56□□□□□ -0.4
PTPRM-205ENST00000577827 RARSP54136 660 aaKnown RBP12.56□□□□□ -0.4
PTPRM-205ENST00000577827 IFT140Q96RY7 1462 aa12.56□□□□□ -0.4
PTPRM-205ENST00000577827 PTPRKQ15262 1439 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 ERC2O15083 957 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 NEK4P51957 841 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 GNAI3P08754 354 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 SASS6Q6UVJ0 657 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 RNF214Q8ND24 703 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 TBC1D2Q9BYX2 928 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 GPS2Q13227 327 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.55□□□□□ -0.4
PTPRM-205ENST00000577827 GPRASP1Q5JY77 1395 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 DHX29Q7Z478 1369 aaKnown RBP12.55□□□□□ -0.4
PTPRM-205ENST00000577827 RALGAPBQ86X10 1494 aa12.55□□□□□ -0.4
PTPRM-205ENST00000577827 FKBP5Q13451 457 aaPredicted RBP12.55□□□□□ -0.4
PTPRM-205ENST00000577827 BICD2Q8TD16 824 aa12.54□□□□□ -0.4
PTPRM-205ENST00000577827 TSR2Q969E8 191 aaKnown RBP12.54□□□□□ -0.4
PTPRM-205ENST00000577827 VPS37CA5D8V6 355 aaPredicted RBP12.54□□□□□ -0.4
PTPRM-205ENST00000577827 TWISTNBQ3B726 338 aaPredicted RBP12.54□□□□□ -0.4
PTPRM-205ENST00000577827 GORABQ5T7V8 394 aa12.54□□□□□ -0.4
PTPRM-205ENST00000577827 SLC12A5Q9H2X9 1139 aa12.54□□□□□ -0.4
PTPRM-205ENST00000577827 ABCC11Q96J66 1382 aa12.53□□□□□ -0.4
PTPRM-205ENST00000577827 IFIT2P09913 472 aaKnown RBP12.53□□□□□ -0.4
PTPRM-205ENST00000577827 TEX35Q5T0J7 233 aa12.53□□□□□ -0.4
PTPRM-205ENST00000577827 CABP2Q9NPB3 220 aa12.53□□□□□ -0.4
PTPRM-205ENST00000577827 PRKAR2BP31323 418 aa12.53□□□□□ -0.4
PTPRM-205ENST00000577827 TBC1D32Q96NH3 1257 aa12.53□□□□□ -0.4
PTPRM-205ENST00000577827 UGGT2Q9NYU1 1516 aa12.53□□□□□ -0.4
PTPRM-205ENST00000577827 PDCP20941 246 aa12.53□□□□□ -0.4
PTPRM-205ENST00000577827 LRRFIP1Q32MZ4 808 aaKnown RBP12.53□□□□□ -0.4
PTPRM-205ENST00000577827 IFT57Q9NWB7 429 aa12.52□□□□□ -0.4
PTPRM-205ENST00000577827 WDR33Q9C0J8 1336 aaKnown RBP12.52□□□□□ -0.4
PTPRM-205ENST00000577827 A0A0G2JS52 829 aa12.52□□□□□ -0.41
PTPRM-205ENST00000577827 HMOX1P09601 288 aa12.52□□□□□ -0.41
PTPRM-205ENST00000577827 ZNF592Q92610 1267 aa12.52□□□□□ -0.41
PTPRM-205ENST00000577827 PARD3Q8TEW0 1356 aa12.52□□□□□ -0.41
PTPRM-205ENST00000577827 TSPYL4Q9UJ04 414 aa12.52□□□□□ -0.41
PTPRM-205ENST00000577827 RNF123Q5XPI4 1314 aa12.52□□□□□ -0.41
PTPRM-205ENST00000577827 TMEM132EQ6IEE7 984 aa12.51□□□□□ -0.41
PTPRM-205ENST00000577827 ARGLU1Q9NWB6 273 aaPredicted RBP12.51□□□□□ -0.41
PTPRM-205ENST00000577827 EID1Q9Y6B2 187 aa12.51□□□□□ -0.41
PTPRM-205ENST00000577827 MRC2Q9UBG0 1479 aa12.51□□□□□ -0.41
PTPRM-205ENST00000577827 RPGRIP1LQ68CZ1 1315 aa12.51□□□□□ -0.41
PTPRM-205ENST00000577827 SKAP1Q86WV1 359 aa12.51□□□□□ -0.41
PTPRM-205ENST00000577827 NESP48681 1621 aa12.51□□□□□ -0.41
PTPRM-205ENST00000577827 CCDC73Q6ZRK6 1079 aa12.5□□□□□ -0.41
PTPRM-205ENST00000577827 C9orf78Q9NZ63 289 aaPredicted RBP12.5□□□□□ -0.41
PTPRM-205ENST00000577827 CFAP43Q8NDM7 1665 aa12.5□□□□□ -0.41
PTPRM-205ENST00000577827 PSMA5P28066 241 aa12.5□□□□□ -0.41
PTPRM-205ENST00000577827 ALDH1L2Q3SY69 923 aa12.5□□□□□ -0.41
PTPRM-205ENST00000577827 CPLX2Q6PUV4 134 aaKnown RBP12.5□□□□□ -0.41
PTPRM-205ENST00000577827 CNTROBQ8N137 903 aa12.5□□□□□ -0.41
PTPRM-205ENST00000577827 PDIA4P13667 645 aaKnown RBP12.5□□□□□ -0.41
PTPRM-205ENST00000577827 TEFQ10587 303 aa12.5□□□□□ -0.41
PTPRM-205ENST00000577827 RPAP2Q8IXW5 612 aaPredicted RBP12.5□□□□□ -0.41
PTPRM-205ENST00000577827 TCOF1Q13428 1488 aaKnown RBP12.5□□□□□ -0.41
PTPRM-205ENST00000577827 FCHSD2O94868 740 aa12.49□□□□□ -0.41
PTPRM-205ENST00000577827 UBTFL1P0CB47 393 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms