RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 TRAF7Q6Q0C0 670 aa12.32□□□□□ -0.44
SMCHD1-202ENST00000577300 NUTM1Q86Y26 1132 aa12.32□□□□□ -0.44
SMCHD1-202ENST00000577300 HLA-CQ95604 372 aa12.32□□□□□ -0.44
SMCHD1-202ENST00000577300 LCE2BO14633 110 aa12.31□□□□□ -0.44
SMCHD1-202ENST00000577300 USB1Q9BQ65 265 aaKnown RBP12.31□□□□□ -0.44
SMCHD1-202ENST00000577300 MMP16P51512 607 aa12.3□□□□□ -0.44
SMCHD1-202ENST00000577300 GDF9O60383 454 aa12.29□□□□□ -0.44
SMCHD1-202ENST00000577300 GIGYF2Q6Y7W6 1299 aaKnown RBP12.28□□□□□ -0.44
SMCHD1-202ENST00000577300 GUCA2AQ02747 115 aa12.27□□□□□ -0.45
SMCHD1-202ENST00000577300 AK7Q96M32 723 aa12.27□□□□□ -0.45
SMCHD1-202ENST00000577300 TRIM66O15016 1216 aa12.26□□□□□ -0.45
SMCHD1-202ENST00000577300 DXOO77932 396 aaKnown RBP12.26□□□□□ -0.45
SMCHD1-202ENST00000577300 CD2BP2O95400 341 aaKnown RBP12.25□□□□□ -0.45
SMCHD1-202ENST00000577300 SPIRE2Q8WWL2 714 aa12.25□□□□□ -0.45
SMCHD1-202ENST00000577300 FDX1P10109 184 aa12.23□□□□□ -0.45
SMCHD1-202ENST00000577300 PARP9Q8IXQ6 854 aa12.23□□□□□ -0.45
SMCHD1-202ENST00000577300 TNFRSF10AO00220 468 aa12.22□□□□□ -0.45
SMCHD1-202ENST00000577300 ZBTB24O43167 697 aaPredicted RBP12.22□□□□□ -0.45
SMCHD1-202ENST00000577300 PKD2L1Q9P0L9 805 aa12.22□□□□□ -0.45
SMCHD1-202ENST00000577300 DGAT1O75907 488 aa12.21□□□□□ -0.45
SMCHD1-202ENST00000577300 RETREG3Q86VR2 466 aa12.21□□□□□ -0.45
SMCHD1-202ENST00000577300 PCDHGC3Q9UN70 934 aa12.21□□□□□ -0.45
SMCHD1-202ENST00000577300 SYMPKQ92797 1274 aaKnown RBP12.2□□□□□ -0.46
SMCHD1-202ENST00000577300 BEGAINQ9BUH8 593 aa12.2□□□□□ -0.46
SMCHD1-202ENST00000577300 JUNDP17535 347 aa12.19□□□□□ -0.46
SMCHD1-202ENST00000577300 PKDCCQ504Y2 493 aa12.19□□□□□ -0.46
SMCHD1-202ENST00000577300 MOXD2PA6NHM9 499 aa12.18□□□□□ -0.46
SMCHD1-202ENST00000577300 FOXC1Q12948 553 aa12.18□□□□□ -0.46
SMCHD1-202ENST00000577300 DIXDC1Q155Q3 683 aa12.17□□□□□ -0.46
SMCHD1-202ENST00000577300 MS4A1P11836 297 aa12.16□□□□□ -0.46
SMCHD1-202ENST00000577300 NDUFV2P19404 249 aa12.16□□□□□ -0.46
SMCHD1-202ENST00000577300 TRIM32Q13049 653 aa12.16□□□□□ -0.46
SMCHD1-202ENST00000577300 FAM187AA6NFU0 413 aa12.15□□□□□ -0.46
SMCHD1-202ENST00000577300 C6orf229H3BNL8 230 aa12.15□□□□□ -0.46
SMCHD1-202ENST00000577300 GJA5P36382 358 aa12.15□□□□□ -0.46
SMCHD1-202ENST00000577300 PDE4DQ08499 809 aa12.15□□□□□ -0.46
SMCHD1-202ENST00000577300 MYT1Q01538 1121 aa12.14□□□□□ -0.47
SMCHD1-202ENST00000577300 TBC1D2Q9BYX2 928 aa12.14□□□□□ -0.47
SMCHD1-202ENST00000577300 SLC24A3Q9HC58 644 aa12.14□□□□□ -0.47
SMCHD1-202ENST00000577300 CCDC24Q8N4L8 307 aa12.13□□□□□ -0.47
SMCHD1-202ENST00000577300 TOR4AQ9NXH8 423 aa12.13□□□□□ -0.47
SMCHD1-202ENST00000577300 SPDYE5A6NIY4 337 aa12.11□□□□□ -0.47
SMCHD1-202ENST00000577300 WNT7AO00755 349 aa12.11□□□□□ -0.47
SMCHD1-202ENST00000577300 SLC24A1O60721 1099 aa12.11□□□□□ -0.47
SMCHD1-202ENST00000577300 MTMR2Q13614 643 aa12.1□□□□□ -0.47
SMCHD1-202ENST00000577300 RSBN1LQ6PCB5 846 aaPredicted RBP12.1□□□□□ -0.47
SMCHD1-202ENST00000577300 CYP4X1Q8N118 509 aa12.1□□□□□ -0.47
SMCHD1-202ENST00000577300 BCANQ96GW7 911 aa12.1□□□□□ -0.47
SMCHD1-202ENST00000577300 NUDT12Q9BQG2 462 aa12.1□□□□□ -0.47
SMCHD1-202ENST00000577300 SPTLC1O15269 473 aa12.08□□□□□ -0.48
SMCHD1-202ENST00000577300 WNT7BP56706 349 aa12.07□□□□□ -0.48
SMCHD1-202ENST00000577300 PTPRNQ16849 979 aa12.07□□□□□ -0.48
SMCHD1-202ENST00000577300 DESI1Q6ICB0 168 aa12.07□□□□□ -0.48
SMCHD1-202ENST00000577300 PRR7Q8TB68 274 aa12.07□□□□□ -0.48
SMCHD1-202ENST00000577300 CCNYL3P0C7X3 344 aa12.06□□□□□ -0.48
SMCHD1-202ENST00000577300 AVPP01185 164 aa12.05□□□□□ -0.48
SMCHD1-202ENST00000577300 SKOR1P84550 965 aa12.04□□□□□ -0.48
SMCHD1-202ENST00000577300 ZNF787Q6DD87 383 aa12.04□□□□□ -0.48
SMCHD1-202ENST00000577300 PTCRAQ6ISU1 281 aaPredicted RBP12.04□□□□□ -0.48
SMCHD1-202ENST00000577300 RIC3Q7Z5B4 369 aa12.04□□□□□ -0.48
SMCHD1-202ENST00000577300 SNIP1Q8TAD8 396 aaKnown RBP12.04□□□□□ -0.48
SMCHD1-202ENST00000577300 MRGPRX2Q96LB1 330 aa12.04□□□□□ -0.48
SMCHD1-202ENST00000577300 PCDHB15Q9Y5E8 787 aa12.04□□□□□ -0.48
SMCHD1-202ENST00000577300 TTC24A2A3L6 582 aaPredicted RBP12.03□□□□□ -0.48
SMCHD1-202ENST00000577300 PRPF38BQ5VTL8 546 aaKnown RBP12.03□□□□□ -0.48
SMCHD1-202ENST00000577300 CRIPAKQ8N1N5 446 aa12.03□□□□□ -0.48
SMCHD1-202ENST00000577300 RC3H1Q5TC82 1133 aaKnown RBP12.02□□□□□ -0.49
SMCHD1-202ENST00000577300 ZBTB3Q9H5J0 574 aa12.02□□□□□ -0.49
SMCHD1-202ENST00000577300 AAASQ9NRG9 546 aa12.02□□□□□ -0.49
SMCHD1-202ENST00000577300 EVA1BQ9NVM1 165 aa12.02□□□□□ -0.49
SMCHD1-202ENST00000577300 TUSC1Q2TAM9 212 aa12.01□□□□□ -0.49
SMCHD1-202ENST00000577300 MYSM1Q5VVJ2 828 aa12.01□□□□□ -0.49
SMCHD1-202ENST00000577300 HRCP23327 699 aa12□□□□□ -0.49
SMCHD1-202ENST00000577300 ST8SIA5O15466 376 aa11.99□□□□□ -0.49
SMCHD1-202ENST00000577300 KCNH2Q12809 1159 aa11.99□□□□□ -0.49
SMCHD1-202ENST00000577300 CTC1Q2NKJ3 1217 aa11.99□□□□□ -0.49
SMCHD1-202ENST00000577300 CFAP99D6REC4 459 aa11.98□□□□□ -0.49
SMCHD1-202ENST00000577300 SMPD1P17405 629 aa11.98□□□□□ -0.49
SMCHD1-202ENST00000577300 SMCPP49901 116 aaPredicted RBP11.98□□□□□ -0.49
SMCHD1-202ENST00000577300 LYPD8Q6UX82 237 aa11.97□□□□□ -0.49
SMCHD1-202ENST00000577300 UNC93B1Q9H1C4 597 aa11.97□□□□□ -0.49
SMCHD1-202ENST00000577300 LIMD1Q9UGP4 676 aa11.97□□□□□ -0.49
SMCHD1-202ENST00000577300 CABLES1Q8TDN4 633 aa11.95□□□□□ -0.5
SMCHD1-202ENST00000577300 J3QL48 77 aa11.94□□□□□ -0.5
SMCHD1-202ENST00000577300 AXIN1O15169 862 aa11.94□□□□□ -0.5
SMCHD1-202ENST00000577300 SH3BP2P78314 561 aa11.94□□□□□ -0.5
SMCHD1-202ENST00000577300 CSPP1Q1MSJ5 1256 aa11.94□□□□□ -0.5
SMCHD1-202ENST00000577300 RSPH6AQ9H0K4 717 aa11.94□□□□□ -0.5
SMCHD1-202ENST00000577300 EHBP1Q8NDI1 1231 aa11.93□□□□□ -0.5
SMCHD1-202ENST00000577300 SIAH2O43255 324 aa11.92□□□□□ -0.5
SMCHD1-202ENST00000577300 LILRB3O75022 631 aa11.92□□□□□ -0.5
SMCHD1-202ENST00000577300 POTECB2RU33 542 aa11.91□□□□□ -0.5
SMCHD1-202ENST00000577300 CLK2P49760 499 aaKnown RBP11.91□□□□□ -0.5
SMCHD1-202ENST00000577300 QPCTQ16769 361 aa11.91□□□□□ -0.5
SMCHD1-202ENST00000577300 BAP1Q92560 729 aa11.91□□□□□ -0.5
SMCHD1-202ENST00000577300 F12P00748 615 aaPredicted RBP11.9□□□□□ -0.5
SMCHD1-202ENST00000577300 NUTM2BA6NNL0 878 aaPredicted RBP11.89□□□□□ -0.51
SMCHD1-202ENST00000577300 NUTM2EB1AL46 878 aaPredicted RBP11.89□□□□□ -0.51
SMCHD1-202ENST00000577300 CTHP32929 405 aa11.89□□□□□ -0.51
SMCHD1-202ENST00000577300 LINC01559Q495D7 138 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms