RNA–Protein interactions for RNA: ENST00000576033.5

CCDC40-215, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 466 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-215ENST00000576033 ZEB1P37275 1124 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-215ENST00000576033 MST1RQ04912 1400 aa11.39□□□□□ -0.59
CCDC40-215ENST00000576033 FBXO41Q8TF61 875 aa11.39□□□□□ -0.59
CCDC40-215ENST00000576033 PHF23Q9BUL5 403 aaPredicted RBP11.39□□□□□ -0.59
CCDC40-215ENST00000576033 PRAM1Q96QH2 718 aa11.38□□□□□ -0.59
CCDC40-215ENST00000576033 ROCK2O75116 1388 aaKnown RBP11.38□□□□□ -0.59
CCDC40-215ENST00000576033 NUTM2FA1L443 756 aa11.37□□□□□ -0.59
CCDC40-215ENST00000576033 HIRIP3Q9BW71 556 aaPredicted RBP11.37□□□□□ -0.59
CCDC40-215ENST00000576033 FAM135BQ49AJ0 1406 aa11.36□□□□□ -0.59
CCDC40-215ENST00000576033 TULP4Q9NRJ4 1543 aa11.36□□□□□ -0.59
CCDC40-215ENST00000576033 NHSL1Q5SYE7 1610 aa11.36□□□□□ -0.59
CCDC40-215ENST00000576033 PHLPP1O60346 1717 aa11.36□□□□□ -0.59
CCDC40-215ENST00000576033 MINK1Q8N4C8 1332 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-215ENST00000576033 DCCP43146 1447 aa11.35□□□□□ -0.59
CCDC40-215ENST00000576033 DDX17Q92841 729 aaKnown RBP11.35□□□□□ -0.59
CCDC40-215ENST00000576033 COL16A1Q07092 1604 aaPredicted RBP11.35□□□□□ -0.59
CCDC40-215ENST00000576033 NCOA3Q9Y6Q9 1424 aa11.35□□□□□ -0.59
CCDC40-215ENST00000576033 TOPAZ1Q8N9V7 1692 aa11.34□□□□□ -0.59
CCDC40-215ENST00000576033 GPRASP1Q5JY77 1395 aa11.34□□□□□ -0.59
CCDC40-215ENST00000576033 CLSPNQ9HAW4 1339 aa11.34□□□□□ -0.59
CCDC40-215ENST00000576033 C1orf167Q5SNV9 1468 aa11.33□□□□□ -0.6
CCDC40-215ENST00000576033 C19orf44Q9H6X5 657 aa11.33□□□□□ -0.6
CCDC40-215ENST00000576033 TOM1O60784 492 aa11.32□□□□□ -0.6
CCDC40-215ENST00000576033 HSPA1LP34931 641 aa11.32□□□□□ -0.6
CCDC40-215ENST00000576033 POGKQ9P215 609 aa11.32□□□□□ -0.6
CCDC40-215ENST00000576033 AHDC1Q5TGY3 1603 aaPredicted RBP11.31□□□□□ -0.6
CCDC40-215ENST00000576033 ATF3P18847 181 aa11.31□□□□□ -0.6
CCDC40-215ENST00000576033 BRINP3Q76B58 766 aa11.31□□□□□ -0.6
CCDC40-215ENST00000576033 STAC3Q96MF2 364 aa11.31□□□□□ -0.6
CCDC40-215ENST00000576033 ORAI2Q96SN7 254 aa11.31□□□□□ -0.6
CCDC40-215ENST00000576033 PRR36Q9H6K5 1346 aa11.31□□□□□ -0.6
CCDC40-215ENST00000576033 ATP7BP35670 1465 aa11.31□□□□□ -0.6
CCDC40-215ENST00000576033 SLAIN2Q9P270 581 aa11.3□□□□□ -0.6
CCDC40-215ENST00000576033 ITSN1Q15811 1721 aa11.29□□□□□ -0.6
CCDC40-215ENST00000576033 CADPS2Q86UW7 1296 aa11.29□□□□□ -0.6
CCDC40-215ENST00000576033 CARD11Q9BXL7 1154 aa11.29□□□□□ -0.6
CCDC40-215ENST00000576033 KIF1AQ12756 1690 aa11.29□□□□□ -0.6
CCDC40-215ENST00000576033 CENPJQ9HC77 1338 aaPredicted RBP11.29□□□□□ -0.6
CCDC40-215ENST00000576033 XPCQ01831 940 aaPredicted RBP11.27□□□□□ -0.61
CCDC40-215ENST00000576033 SIRT1Q96EB6 747 aa11.27□□□□□ -0.61
CCDC40-215ENST00000576033 USP47Q96K76 1375 aa11.27□□□□□ -0.61
CCDC40-215ENST00000576033 TRPM3Q9HCF6 1732 aaPredicted RBP11.26□□□□□ -0.61
CCDC40-215ENST00000576033 PXDNQ92626 1479 aa11.26□□□□□ -0.61
CCDC40-215ENST00000576033 SHPRHQ149N8 1683 aa11.25□□□□□ -0.61
CCDC40-215ENST00000576033 WASLO00401 505 aaPredicted RBP11.25□□□□□ -0.61
CCDC40-215ENST00000576033 ESCO1Q5FWF5 840 aa11.25□□□□□ -0.61
CCDC40-215ENST00000576033 CABP2Q9NPB3 220 aa11.25□□□□□ -0.61
CCDC40-215ENST00000576033 ABCA3Q99758 1704 aa11.25□□□□□ -0.61
CCDC40-215ENST00000576033 MYOM1P52179 1685 aa11.24□□□□□ -0.61
CCDC40-215ENST00000576033 PMFBP1Q8TBY8 1022 aa11.24□□□□□ -0.61
CCDC40-215ENST00000576033 CDK19Q9BWU1 502 aa11.24□□□□□ -0.61
CCDC40-215ENST00000576033 DISP3Q9P2K9 1392 aa11.24□□□□□ -0.61
CCDC40-215ENST00000576033 ANKARQ7Z5J8 1434 aa11.24□□□□□ -0.61
CCDC40-215ENST00000576033 MED1Q15648 1581 aaPredicted RBP11.24□□□□□ -0.61
CCDC40-215ENST00000576033 LRP6O75581 1613 aa11.24□□□□□ -0.61
CCDC40-215ENST00000576033 EIF3AQ14152 1382 aaKnown RBP11.23□□□□□ -0.61
CCDC40-215ENST00000576033 AKAP12Q02952 1782 aa11.23□□□□□ -0.61
CCDC40-215ENST00000576033 ST20-MTHFSA0A0A6YYL1 179 aa11.22□□□□□ -0.61
CCDC40-215ENST00000576033 NRKQ7Z2Y5 1582 aa11.22□□□□□ -0.61
CCDC40-215ENST00000576033 ALS2Q96Q42 1657 aa11.22□□□□□ -0.61
CCDC40-215ENST00000576033 CRYBG1Q9Y4K1 1723 aa11.21□□□□□ -0.61
CCDC40-215ENST00000576033 PPIP5K1Q6PFW1 1433 aa11.21□□□□□ -0.61
CCDC40-215ENST00000576033 FOXO3O43524 673 aa11.21□□□□□ -0.61
CCDC40-215ENST00000576033 TESK2Q96S53 571 aa11.21□□□□□ -0.61
CCDC40-215ENST00000576033 SRPK2P78362 688 aaKnown RBP11.2□□□□□ -0.62
CCDC40-215ENST00000576033 NUDT16Q96DE0 195 aaKnown RBP11.2□□□□□ -0.62
CCDC40-215ENST00000576033 TIMELESSQ9UNS1 1208 aa11.2□□□□□ -0.62
CCDC40-215ENST00000576033 MON2Q7Z3U7 1717 aa11.2□□□□□ -0.62
CCDC40-215ENST00000576033 MARF1Q9Y4F3 1742 aaKnown RBP11.2□□□□□ -0.62
CCDC40-215ENST00000576033 COL22A1Q8NFW1 1626 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-215ENST00000576033 PLEKHG5O94827 1062 aa11.19□□□□□ -0.62
CCDC40-215ENST00000576033 PHF8Q9UPP1 1060 aa11.19□□□□□ -0.62
CCDC40-215ENST00000576033 CD163L1Q9NR16 1453 aa11.19□□□□□ -0.62
CCDC40-215ENST00000576033 PNPLA6Q8IY17 1366 aa11.18□□□□□ -0.62
CCDC40-215ENST00000576033 SBNO2Q9Y2G9 1366 aa11.18□□□□□ -0.62
CCDC40-215ENST00000576033 PIK3C2AO00443 1686 aa11.18□□□□□ -0.62
CCDC40-215ENST00000576033 PHRF1Q9P1Y6 1649 aaKnown RBP11.18□□□□□ -0.62
CCDC40-215ENST00000576033 HSPA5P11021 654 aaKnown RBP11.18□□□□□ -0.62
CCDC40-215ENST00000576033 SOS2Q07890 1332 aaPredicted RBP11.17□□□□□ -0.62
CCDC40-215ENST00000576033 EVC2Q86UK5 1308 aa11.16□□□□□ -0.62
CCDC40-215ENST00000576033 TNS3Q68CZ2 1445 aa11.16□□□□□ -0.62
CCDC40-215ENST00000576033 JCADQ9P266 1359 aa11.16□□□□□ -0.62
CCDC40-215ENST00000576033 ACEP12821 1306 aa11.15□□□□□ -0.62
CCDC40-215ENST00000576033 NPHP3Q7Z494 1330 aa11.15□□□□□ -0.62
CCDC40-215ENST00000576033 CABP1Q9NZU7 370 aa11.15□□□□□ -0.62
CCDC40-215ENST00000576033 POLR3AO14802 1390 aaPredicted RBP11.15□□□□□ -0.63
CCDC40-215ENST00000576033 C11orf95C9JLR9 678 aaPredicted RBP11.14□□□□□ -0.63
CCDC40-215ENST00000576033 KRT28Q7Z3Y7 464 aa11.14□□□□□ -0.63
CCDC40-215ENST00000576033 USP6P35125 1406 aa11.13□□□□□ -0.63
CCDC40-215ENST00000576033 NUTM2BA6NNL0 878 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-215ENST00000576033 NUTM2EB1AL46 878 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-215ENST00000576033 NUTM2AQ8IVF1 878 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-215ENST00000576033 NGDNQ8NEJ9 315 aaKnown RBP11.13□□□□□ -0.63
CCDC40-215ENST00000576033 CABLES1Q8TDN4 633 aa11.13□□□□□ -0.63
CCDC40-215ENST00000576033 SPATA31A3Q5VYP0 1347 aa11.12□□□□□ -0.63
CCDC40-215ENST00000576033 PLCH1Q4KWH8 1693 aa11.12□□□□□ -0.63
CCDC40-215ENST00000576033 NUTM2GQ5VZR2 741 aa11.12□□□□□ -0.63
CCDC40-215ENST00000576033 CCDC61Q9Y6R9 512 aa11.12□□□□□ -0.63
CCDC40-215ENST00000576033 A0A1W2PP64 1363 aa11.12□□□□□ -0.63
CCDC40-215ENST00000576033 CPSF1Q10570 1443 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms