RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 DCAF8L1A6NGE4 600 aa25.92■■□□□ 1.74
VPS53-218ENST00000575207 ZNF784Q8NCA9 323 aaPredicted RBP25.92■■□□□ 1.74
VPS53-218ENST00000575207 METP08581 1390 aa25.92■■□□□ 1.74
VPS53-218ENST00000575207 CROCC2H7BZ55 1655 aa25.91■■□□□ 1.74
VPS53-218ENST00000575207 NRXN3Q9Y4C0 1643 aa25.91■■□□□ 1.74
VPS53-218ENST00000575207 DISP2A7MBM2 1401 aa25.89■■□□□ 1.74
VPS53-218ENST00000575207 VPS72Q15906 364 aa25.89■■□□□ 1.74
VPS53-218ENST00000575207 C1QTNF8P60827 252 aa25.87■■□□□ 1.73
VPS53-218ENST00000575207 CEP350Q5VT06 3117 aa25.87■■□□□ 1.73
VPS53-218ENST00000575207 NPHP3Q7Z494 1330 aa25.87■■□□□ 1.73
VPS53-218ENST00000575207 UTRNP46939 3433 aa25.86■■□□□ 1.73
VPS53-218ENST00000575207 PXDNQ92626 1479 aa25.85■■□□□ 1.73
VPS53-218ENST00000575207 ANKRD30AQ9BXX3 1397 aa25.83■■□□□ 1.73
VPS53-218ENST00000575207 PTPN23Q9H3S7 1636 aa25.83■■□□□ 1.73
VPS53-218ENST00000575207 NINLQ9Y2I6 1382 aa25.82■■□□□ 1.72
VPS53-218ENST00000575207 DAPK1P53355 1430 aa25.81■■□□□ 1.72
VPS53-218ENST00000575207 RGPD1P0DJD0 1748 aa25.81■■□□□ 1.72
VPS53-218ENST00000575207 EZH2Q15910 746 aaKnown RBP25.79■■□□□ 1.72
VPS53-218ENST00000575207 ADGRL2O95490 1459 aa25.77■■□□□ 1.72
VPS53-218ENST00000575207 CAMKK2Q96RR4 588 aa25.76■■□□□ 1.71
VPS53-218ENST00000575207 PPP1R1BQ9UD71 204 aaPredicted RBP25.74■■□□□ 1.71
VPS53-218ENST00000575207 FOXO3O43524 673 aa25.73■■□□□ 1.71
VPS53-218ENST00000575207 XPCQ01831 940 aaPredicted RBP25.73■■□□□ 1.71
VPS53-218ENST00000575207 CHIC2Q9UKJ5 165 aa25.73■■□□□ 1.71
VPS53-218ENST00000575207 CCDC9Q9Y3X0 531 aaKnown RBP25.73■■□□□ 1.71
VPS53-218ENST00000575207 USP32Q8NFA0 1604 aa25.73■■□□□ 1.71
VPS53-218ENST00000575207 ESCO1Q5FWF5 840 aa25.72■■□□□ 1.71
VPS53-218ENST00000575207 SPON1Q9HCB6 807 aa25.71■■□□□ 1.71
VPS53-218ENST00000575207 TNS1Q9HBL0 1735 aaKnown RBP25.7■■□□□ 1.7
VPS53-218ENST00000575207 IQGAP3Q86VI3 1631 aa25.7■■□□□ 1.7
VPS53-218ENST00000575207 LRPPRCP42704 1394 aaKnown RBP25.69■■□□□ 1.7
VPS53-218ENST00000575207 PARD3Q8TEW0 1356 aa25.69■■□□□ 1.7
VPS53-218ENST00000575207 NWD2Q9ULI1 1742 aa25.69■■□□□ 1.7
VPS53-218ENST00000575207 A0A0G2JS52 829 aa25.69■■□□□ 1.7
VPS53-218ENST00000575207 MYT1Q01538 1121 aa25.69■■□□□ 1.7
VPS53-218ENST00000575207 ROBO2Q9HCK4 1378 aa25.69■■□□□ 1.7
VPS53-218ENST00000575207 CAMTA1Q9Y6Y1 1673 aa25.68■■□□□ 1.7
VPS53-218ENST00000575207 SPATA31A3Q5VYP0 1347 aa25.67■■□□□ 1.7
VPS53-218ENST00000575207 KANK4Q5T7N3 995 aaPredicted RBP25.67■■□□□ 1.7
VPS53-218ENST00000575207 KCNQ2O43526 872 aa25.66■■□□□ 1.7
VPS53-218ENST00000575207 FAM98CQ17RN3 349 aaKnown RBP25.65■■□□□ 1.7
VPS53-218ENST00000575207 FAM182BQ5T319 152 aa25.65■■□□□ 1.7
VPS53-218ENST00000575207 E9PCH4 1651 aa25.64■■□□□ 1.7
VPS53-218ENST00000575207 PRAG1Q86YV5 1406 aa25.64■■□□□ 1.7
VPS53-218ENST00000575207 ANKRD50Q9ULJ7 1429 aa25.63■■□□□ 1.69
VPS53-218ENST00000575207 PLCH1Q4KWH8 1693 aa25.63■■□□□ 1.69
VPS53-218ENST00000575207 ADGRB2O60241 1585 aa25.62■■□□□ 1.69
VPS53-218ENST00000575207 HFM1A2PYH4 1435 aa25.6■■□□□ 1.69
VPS53-218ENST00000575207 NBPF8Q3BBV2 869 aa25.59■■□□□ 1.69
VPS53-218ENST00000575207 NBPF14Q5TI25 921 aa25.59■■□□□ 1.69
VPS53-218ENST00000575207 CDC42BPGQ6DT37 1551 aa25.57■■□□□ 1.68
VPS53-218ENST00000575207 HAP1P54257 671 aaPredicted RBP25.56■■□□□ 1.68
VPS53-218ENST00000575207 RREB1Q92766 1687 aa25.55■■□□□ 1.68
VPS53-218ENST00000575207 TRIM37O94972 964 aa25.55■■□□□ 1.68
VPS53-218ENST00000575207 APBA3O96018 575 aa25.55■■□□□ 1.68
VPS53-218ENST00000575207 ZNF326Q5BKZ1 582 aaKnown RBP25.55■■□□□ 1.68
VPS53-218ENST00000575207 FAM83GA6ND36 823 aa25.54■■□□□ 1.68
VPS53-218ENST00000575207 CABLES1Q8TDN4 633 aa25.53■■□□□ 1.68
VPS53-218ENST00000575207 NUP188Q5SRE5 1749 aa25.52■■□□□ 1.68
VPS53-218ENST00000575207 CCDC144AA2RUR9 1427 aa25.52■■□□□ 1.68
VPS53-218ENST00000575207 FAM196AQ6ZSG2 479 aa25.51■■□□□ 1.67
VPS53-218ENST00000575207 CHD4Q14839 1912 aa25.51■■□□□ 1.67
VPS53-218ENST00000575207 KRT28Q7Z3Y7 464 aa25.49■■□□□ 1.67
VPS53-218ENST00000575207 NRAPQ86VF7 1730 aa25.49■■□□□ 1.67
VPS53-218ENST00000575207 THSD7AQ9UPZ6 1657 aa25.48■■□□□ 1.67
VPS53-218ENST00000575207 NEXMIFQ5QGS0 1516 aa25.48■■□□□ 1.67
VPS53-218ENST00000575207 TNS3Q68CZ2 1445 aa25.46■■□□□ 1.67
VPS53-218ENST00000575207 SPATA31A5Q5VU36 1347 aa25.46■■□□□ 1.67
VPS53-218ENST00000575207 SPATA31A7Q8IWB4 1347 aa25.46■■□□□ 1.67
VPS53-218ENST00000575207 GIGYF1O75420 1035 aaPredicted RBP25.46■■□□□ 1.67
VPS53-218ENST00000575207 BTG4Q9NY30 223 aa25.45■■□□□ 1.66
VPS53-218ENST00000575207 NUTM2FA1L443 756 aa25.42■■□□□ 1.66
VPS53-218ENST00000575207 VPS8Q8N3P4 1428 aa25.42■■□□□ 1.66
VPS53-218ENST00000575207 ABCA3Q99758 1704 aa25.41■■□□□ 1.66
VPS53-218ENST00000575207 NAIPQ13075 1403 aa25.41■■□□□ 1.66
VPS53-218ENST00000575207 NRKQ7Z2Y5 1582 aa25.39■■□□□ 1.66
VPS53-218ENST00000575207 KIF1AQ12756 1690 aa25.39■■□□□ 1.66
VPS53-218ENST00000575207 PSME1Q06323 249 aa25.39■■□□□ 1.66
VPS53-218ENST00000575207 SBNO1A3KN83 1393 aa25.37■■□□□ 1.65
VPS53-218ENST00000575207 ARHGEF10O15013 1369 aa25.37■■□□□ 1.65
VPS53-218ENST00000575207 PLEKHG5O94827 1062 aa25.37■■□□□ 1.65
VPS53-218ENST00000575207 SYT17Q9BSW7 474 aa25.35■■□□□ 1.65
VPS53-218ENST00000575207 PTGER2P43116 358 aa25.34■■□□□ 1.65
VPS53-218ENST00000575207 VGFO15240 615 aaPredicted RBP25.33■■□□□ 1.65
VPS53-218ENST00000575207 RRBP1Q9P2E9 1410 aaKnown RBP25.33■■□□□ 1.65
VPS53-218ENST00000575207 COL14A1Q05707 1796 aaKnown RBP25.31■■□□□ 1.64
VPS53-218ENST00000575207 CASZ1Q86V15 1759 aa25.31■■□□□ 1.64
VPS53-218ENST00000575207 NUP155O75694 1391 aa25.31■■□□□ 1.64
VPS53-218ENST00000575207 MYOM1P52179 1685 aa25.3■■□□□ 1.64
VPS53-218ENST00000575207 FHDC1Q9C0D6 1143 aaPredicted RBP25.3■■□□□ 1.64
VPS53-218ENST00000575207 LMOD2Q6P5Q4 547 aa25.29■■□□□ 1.64
VPS53-218ENST00000575207 SPATA31A1Q5TZJ5 1347 aa25.29■■□□□ 1.64
VPS53-218ENST00000575207 FMN2Q9NZ56 1722 aa25.27■■□□□ 1.64
VPS53-218ENST00000575207 PHF8Q9UPP1 1060 aa25.27■■□□□ 1.64
VPS53-218ENST00000575207 WAPLQ7Z5K2 1190 aa25.25■■□□□ 1.63
VPS53-218ENST00000575207 PDGFDQ9GZP0 370 aaPredicted RBP25.25■■□□□ 1.63
VPS53-218ENST00000575207 TECPR2O15040 1411 aa25.24■■□□□ 1.63
VPS53-218ENST00000575207 ZBTB7AO95365 584 aa25.24■■□□□ 1.63
VPS53-218ENST00000575207 ANO8Q9HCE9 1232 aaPredicted RBP25.24■■□□□ 1.63
VPS53-218ENST00000575207 CLTCL1P53675 1640 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms