RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 CSPP1Q1MSJ5 1256 aa10.25□□□□□ -0.77
NUP88-208ENST00000574087 ZPR1O75312 459 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 HRCP23327 699 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 Q3C1V9 767 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 PPP2R2DQ66LE6 453 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 BRICD5Q6PL45 260 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 RNF19BQ6ZMZ0 732 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 ZBTB3Q9H5J0 574 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 IL21Q9HBE4 155 aa10.24□□□□□ -0.77
NUP88-208ENST00000574087 CABLES1Q8TDN4 633 aa10.23□□□□□ -0.77
NUP88-208ENST00000574087 ZNF516Q92618 1163 aa10.23□□□□□ -0.77
NUP88-208ENST00000574087 SYMPKQ92797 1274 aaKnown RBP10.23□□□□□ -0.77
NUP88-208ENST00000574087 FMNL1O95466 1100 aaPredicted RBP10.22□□□□□ -0.77
NUP88-208ENST00000574087 ITGBL1O95965 494 aaPredicted RBP10.22□□□□□ -0.77
NUP88-208ENST00000574087 MTMR2Q13614 643 aa10.22□□□□□ -0.77
NUP88-208ENST00000574087 ATP1B4Q9UN42 357 aaPredicted RBP10.22□□□□□ -0.77
NUP88-208ENST00000574087 C6orf229H3BNL8 230 aa10.21□□□□□ -0.77
NUP88-208ENST00000574087 RTL5Q5HYW3 569 aaPredicted RBP10.21□□□□□ -0.77
NUP88-208ENST00000574087 SPDYE5A6NIY4 337 aa10.2□□□□□ -0.78
NUP88-208ENST00000574087 RETREG3Q86VR2 466 aa10.2□□□□□ -0.78
NUP88-208ENST00000574087 NUTM2BA6NNL0 878 aaPredicted RBP10.19□□□□□ -0.78
NUP88-208ENST00000574087 NUTM2EB1AL46 878 aaPredicted RBP10.19□□□□□ -0.78
NUP88-208ENST00000574087 NUTM2DQ5VT03 806 aaPredicted RBP10.19□□□□□ -0.78
NUP88-208ENST00000574087 NUTM2AQ8IVF1 878 aaPredicted RBP10.19□□□□□ -0.78
NUP88-208ENST00000574087 USB1Q9BQ65 265 aaKnown RBP10.19□□□□□ -0.78
NUP88-208ENST00000574087 TLL1O43897 1013 aa10.18□□□□□ -0.78
NUP88-208ENST00000574087 RFC5P40937 340 aa10.18□□□□□ -0.78
NUP88-208ENST00000574087 SPSB2Q99619 263 aa10.18□□□□□ -0.78
NUP88-208ENST00000574087 KCNC4Q03721 635 aa10.17□□□□□ -0.78
NUP88-208ENST00000574087 FAM160A2Q8N612 972 aaPredicted RBP10.17□□□□□ -0.78
NUP88-208ENST00000574087 CFAP99D6REC4 459 aa10.16□□□□□ -0.78
NUP88-208ENST00000574087 ADH1BP00325 375 aa10.16□□□□□ -0.78
NUP88-208ENST00000574087 MSS51Q4VC12 460 aa10.16□□□□□ -0.78
NUP88-208ENST00000574087 NKX2-3Q8TAU0 364 aa10.16□□□□□ -0.78
NUP88-208ENST00000574087 PRR7Q8TB68 274 aa10.16□□□□□ -0.78
NUP88-208ENST00000574087 GTF3C3Q9Y5Q9 886 aa10.16□□□□□ -0.78
NUP88-208ENST00000574087 TMEM259Q4ZIN3 620 aa10.13□□□□□ -0.79
NUP88-208ENST00000574087 DESI1Q6ICB0 168 aa10.13□□□□□ -0.79
NUP88-208ENST00000574087 MMP16P51512 607 aa10.11□□□□□ -0.79
NUP88-208ENST00000574087 IFFO2Q5TF58 517 aa10.11□□□□□ -0.79
NUP88-208ENST00000574087 DXOO77932 396 aaKnown RBP10.1□□□□□ -0.79
NUP88-208ENST00000574087 JUNDP17535 347 aa10.1□□□□□ -0.79
NUP88-208ENST00000574087 BANK1Q8NDB2 785 aa10.1□□□□□ -0.79
NUP88-208ENST00000574087 SLC6A16Q9GZN6 736 aa10.1□□□□□ -0.79
NUP88-208ENST00000574087 PRDM9Q9NQV7 894 aa10.1□□□□□ -0.79
NUP88-208ENST00000574087 AP1G2O75843 785 aa10.09□□□□□ -0.79
NUP88-208ENST00000574087 CTDSPL2Q05D32 466 aa10.09□□□□□ -0.79
NUP88-208ENST00000574087 HELBQ8NG08 1087 aaPredicted RBP10.09□□□□□ -0.79
NUP88-208ENST00000574087 S1PR4O95977 384 aa10.08□□□□□ -0.8
NUP88-208ENST00000574087 TSC1Q92574 1164 aa10.08□□□□□ -0.8
NUP88-208ENST00000574087 PLSCR2Q9NRY7 297 aa10.08□□□□□ -0.8
NUP88-208ENST00000574087 LYPD8Q6UX82 237 aa10.07□□□□□ -0.8
NUP88-208ENST00000574087 PER1O15534 1290 aaPredicted RBP10.06□□□□□ -0.8
NUP88-208ENST00000574087 USP17L8P0C7I0 530 aa10.06□□□□□ -0.8
NUP88-208ENST00000574087 PLA2G2EQ9NZK7 142 aa10.06□□□□□ -0.8
NUP88-208ENST00000574087 PTPRNQ16849 979 aa10.05□□□□□ -0.8
NUP88-208ENST00000574087 SNRKQ9NRH2 765 aa10.04□□□□□ -0.8
NUP88-208ENST00000574087 SOCS7O14512 581 aa10.03□□□□□ -0.8
NUP88-208ENST00000574087 FLIIQ13045 1269 aa10.03□□□□□ -0.8
NUP88-208ENST00000574087 MCM6Q14566 821 aa10.03□□□□□ -0.8
NUP88-208ENST00000574087 PPP1R18Q6NYC8 613 aa10.03□□□□□ -0.8
NUP88-208ENST00000574087 LRRN4Q8WUT4 740 aa10.03□□□□□ -0.8
NUP88-208ENST00000574087 RNF223E7ERA6 249 aa10.02□□□□□ -0.81
NUP88-208ENST00000574087 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.02□□□□□ -0.81
NUP88-208ENST00000574087 PPEF1O14829 653 aaPredicted RBP10.01□□□□□ -0.81
NUP88-208ENST00000574087 F12P00748 615 aaPredicted RBP10.01□□□□□ -0.81
NUP88-208ENST00000574087 GGCXP38435 758 aa10.01□□□□□ -0.81
NUP88-208ENST00000574087 MTMR14Q8NCE2 650 aa10.01□□□□□ -0.81
NUP88-208ENST00000574087 NUDT12Q9BQG2 462 aa10.01□□□□□ -0.81
NUP88-208ENST00000574087 HMX1Q9NP08 348 aaPredicted RBP10.01□□□□□ -0.81
NUP88-208ENST00000574087 CCNYL3P0C7X3 344 aa10□□□□□ -0.81
NUP88-208ENST00000574087 EVA1BQ9NVM1 165 aa10□□□□□ -0.81
NUP88-208ENST00000574087 FCF1Q9Y324 198 aaKnown RBP10□□□□□ -0.81
NUP88-208ENST00000574087 ANKLE1Q8NAG6 615 aa9.99□□□□□ -0.81
NUP88-208ENST00000574087 GJD4Q96KN9 370 aaPredicted RBP9.99□□□□□ -0.81
NUP88-208ENST00000574087 TRIM34Q9BYJ4 488 aa9.98□□□□□ -0.81
NUP88-208ENST00000574087 A0A0G2JS52 829 aa9.97□□□□□ -0.81
NUP88-208ENST00000574087 KCNH2Q12809 1159 aa9.97□□□□□ -0.81
NUP88-208ENST00000574087 NR6A1Q15406 480 aa9.96□□□□□ -0.82
NUP88-208ENST00000574087 PLA2G2CQ5R387 149 aa9.96□□□□□ -0.82
NUP88-208ENST00000574087 PTCRAQ6ISU1 281 aaPredicted RBP9.96□□□□□ -0.82
NUP88-208ENST00000574087 CCDC24Q8N4L8 307 aa9.96□□□□□ -0.82
NUP88-208ENST00000574087 EPS8L1Q8TE68 723 aa9.96□□□□□ -0.82
NUP88-208ENST00000574087 MAP10Q9P2G4 905 aa9.96□□□□□ -0.82
NUP88-208ENST00000574087 CTHP32929 405 aa9.93□□□□□ -0.82
NUP88-208ENST00000574087 APBB1O00213 710 aa9.92□□□□□ -0.82
NUP88-208ENST00000574087 UNC93B1Q9H1C4 597 aa9.92□□□□□ -0.82
NUP88-208ENST00000574087 EMID1Q96A84 441 aaPredicted RBP9.91□□□□□ -0.82
NUP88-208ENST00000574087 GPR37L1O60883 481 aa9.9□□□□□ -0.82
NUP88-208ENST00000574087 UBTFP17480 764 aaKnown RBP9.9□□□□□ -0.82
NUP88-208ENST00000574087 POM121Q96HA1 1249 aa9.9□□□□□ -0.82
NUP88-208ENST00000574087 COG6Q9Y2V7 657 aa9.9□□□□□ -0.82
NUP88-208ENST00000574087 NDUFB9Q9Y6M9 179 aa9.9□□□□□ -0.82
NUP88-208ENST00000574087 TBC1D2BQ9UPU7 963 aa9.89□□□□□ -0.83
NUP88-208ENST00000574087 RPIAP49247 311 aa9.88□□□□□ -0.83
NUP88-208ENST00000574087 LIAT1Q6ZQX7 453 aa9.88□□□□□ -0.83
NUP88-208ENST00000574087 GDPD2Q9HCC8 539 aa9.88□□□□□ -0.83
NUP88-208ENST00000574087 PRM3Q9NNZ6 103 aa9.88□□□□□ -0.83
NUP88-208ENST00000574087 FKBPLQ9UIM3 349 aa9.88□□□□□ -0.83
NUP88-208ENST00000574087 ZBTB24O43167 697 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms