RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 ABCA9Q8IUA7 1624 aa20.1■□□□□ 0.81
NUP88-207ENST00000573584 EFCAB6Q5THR3 1501 aa20.1■□□□□ 0.81
NUP88-207ENST00000573584 SEC24BO95487 1268 aa20.09■□□□□ 0.81
NUP88-207ENST00000573584 MYO3AQ8NEV4 1616 aa20.08■□□□□ 0.81
NUP88-207ENST00000573584 WDR63Q8IWG1 891 aa20.08■□□□□ 0.8
NUP88-207ENST00000573584 PMFBP1Q8TBY8 1022 aa20.07■□□□□ 0.8
NUP88-207ENST00000573584 C14orf93Q9H972 538 aaKnown RBP20.07■□□□□ 0.8
NUP88-207ENST00000573584 IFT172Q9UG01 1749 aa20.07■□□□□ 0.8
NUP88-207ENST00000573584 MTHFSP49914 203 aa20.07■□□□□ 0.8
NUP88-207ENST00000573584 PHF23Q9BUL5 403 aaPredicted RBP20.07■□□□□ 0.8
NUP88-207ENST00000573584 BRPF3Q9ULD4 1205 aa20.07■□□□□ 0.8
NUP88-207ENST00000573584 AAMPQ13685 434 aa20.06■□□□□ 0.8
NUP88-207ENST00000573584 MROH2AA6NES4 1674 aa20.06■□□□□ 0.8
NUP88-207ENST00000573584 TMEM132EQ6IEE7 984 aa20.06■□□□□ 0.8
NUP88-207ENST00000573584 CFAP53Q96M91 514 aa20.05■□□□□ 0.8
NUP88-207ENST00000573584 PPRC1Q5VV67 1664 aaKnown RBP20.05■□□□□ 0.8
NUP88-207ENST00000573584 RLBP1P12271 317 aa20.05■□□□□ 0.8
NUP88-207ENST00000573584 BCL2L13Q9BXK5 485 aa20.05■□□□□ 0.8
NUP88-207ENST00000573584 PCDHB15Q9Y5E8 787 aa20.05■□□□□ 0.8
NUP88-207ENST00000573584 SETBP1Q9Y6X0 1596 aa20.04■□□□□ 0.8
NUP88-207ENST00000573584 SHPRHQ149N8 1683 aa20.04■□□□□ 0.8
NUP88-207ENST00000573584 TNNQ9UQP3 1299 aa20.03■□□□□ 0.8
NUP88-207ENST00000573584 BECN1Q14457 450 aa20.03■□□□□ 0.8
NUP88-207ENST00000573584 ADGRB3O60242 1522 aa20.03■□□□□ 0.8
NUP88-207ENST00000573584 CCDC27Q2M243 656 aa20.03■□□□□ 0.8
NUP88-207ENST00000573584 IQSEC2Q5JU85 1478 aa20.02■□□□□ 0.8
NUP88-207ENST00000573584 LMTK2Q8IWU2 1503 aa20.02■□□□□ 0.79
NUP88-207ENST00000573584 ZNF518AQ6AHZ1 1483 aa20■□□□□ 0.79
NUP88-207ENST00000573584 MYH16Q9H6N6 1097 aa20■□□□□ 0.79
NUP88-207ENST00000573584 VIRMAQ69YN4 1812 aaKnown RBP20■□□□□ 0.79
NUP88-207ENST00000573584 GGT6Q6P531 493 aa19.99■□□□□ 0.79
NUP88-207ENST00000573584 RWDD1Q9H446 243 aaPredicted RBP19.99■□□□□ 0.79
NUP88-207ENST00000573584 PDZRN3Q9UPQ7 1066 aa19.99■□□□□ 0.79
NUP88-207ENST00000573584 U2AF1L5P0DN76 240 aaPredicted RBP19.99■□□□□ 0.79
NUP88-207ENST00000573584 U2AF1Q01081 240 aaKnown RBP eCLIP19.99■□□□□ 0.79
NUP88-207ENST00000573584 UPF2Q9HAU5 1272 aaKnown RBP19.99■□□□□ 0.79
NUP88-207ENST00000573584 KIDINS220Q9ULH0 1771 aa19.99■□□□□ 0.79
NUP88-207ENST00000573584 NPATQ14207 1427 aa19.98■□□□□ 0.79
NUP88-207ENST00000573584 ADGRB1O14514 1584 aa19.98■□□□□ 0.79
NUP88-207ENST00000573584 QRICH2Q9H0J4 1663 aa19.97■□□□□ 0.79
NUP88-207ENST00000573584 RPGRIP1LQ68CZ1 1315 aa19.97■□□□□ 0.79
NUP88-207ENST00000573584 ASXL2Q76L83 1435 aa19.96■□□□□ 0.79
NUP88-207ENST00000573584 ANO8Q9HCE9 1232 aaPredicted RBP19.96■□□□□ 0.79
NUP88-207ENST00000573584 EVC2Q86UK5 1308 aa19.96■□□□□ 0.79
NUP88-207ENST00000573584 SLKQ9H2G2 1235 aaPredicted RBP19.96■□□□□ 0.79
NUP88-207ENST00000573584 NLRP1Q9C000 1473 aa19.95■□□□□ 0.79
NUP88-207ENST00000573584 NCBP3Q53F19 620 aaKnown RBP19.95■□□□□ 0.78
NUP88-207ENST00000573584 ZMYM3Q14202 1370 aa19.94■□□□□ 0.78
NUP88-207ENST00000573584 MVPQ14764 893 aaKnown RBP19.94■□□□□ 0.78
NUP88-207ENST00000573584 ZC3H13Q5T200 1668 aaKnown RBP19.94■□□□□ 0.78
NUP88-207ENST00000573584 TBC1D32Q96NH3 1257 aa19.94■□□□□ 0.78
NUP88-207ENST00000573584 PUS7Q96PZ0 661 aaKnown RBP19.94■□□□□ 0.78
NUP88-207ENST00000573584 NUTM2DQ5VT03 806 aaPredicted RBP19.93■□□□□ 0.78
NUP88-207ENST00000573584 ZKSCAN2Q63HK3 967 aa19.93■□□□□ 0.78
NUP88-207ENST00000573584 ANKRD36BQ8N2N9 1353 aa19.93■□□□□ 0.78
NUP88-207ENST00000573584 FTSJ3Q8IY81 847 aaKnown RBP19.93■□□□□ 0.78
NUP88-207ENST00000573584 USP32Q8NFA0 1604 aa19.93■□□□□ 0.78
NUP88-207ENST00000573584 PPLO60437 1756 aa19.93■□□□□ 0.78
NUP88-207ENST00000573584 CFAP65Q6ZU64 1925 aaKnown RBP19.92■□□□□ 0.78
NUP88-207ENST00000573584 NSD2O96028 1365 aa19.92■□□□□ 0.78
NUP88-207ENST00000573584 DZIP1LQ8IYY4 767 aaKnown RBP19.92■□□□□ 0.78
NUP88-207ENST00000573584 CABP2Q9NPB3 220 aa19.92■□□□□ 0.78
NUP88-207ENST00000573584 TSR2Q969E8 191 aaKnown RBP19.9■□□□□ 0.78
NUP88-207ENST00000573584 VGFO15240 615 aaPredicted RBP19.9■□□□□ 0.78
NUP88-207ENST00000573584 ANTXR1Q9H6X2 564 aa19.89■□□□□ 0.78
NUP88-207ENST00000573584 CT47B1P0C2W7 299 aaPredicted RBP19.89■□□□□ 0.77
NUP88-207ENST00000573584 SAFB2Q14151 953 aaKnown RBP eCLIP19.89■□□□□ 0.77
NUP88-207ENST00000573584 TBC1D2Q9BYX2 928 aa19.89■□□□□ 0.77
NUP88-207ENST00000573584 POGKQ9P215 609 aa19.89■□□□□ 0.77
NUP88-207ENST00000573584 SMC4Q9NTJ3 1288 aa19.88■□□□□ 0.77
NUP88-207ENST00000573584 U2SURPO15042 1029 aaKnown RBP19.88■□□□□ 0.77
NUP88-207ENST00000573584 EXOSC9Q06265 439 aaKnown RBP19.87■□□□□ 0.77
NUP88-207ENST00000573584 TULP4Q9NRJ4 1543 aa19.87■□□□□ 0.77
NUP88-207ENST00000573584 GLI2P10070 1586 aa19.86■□□□□ 0.77
NUP88-207ENST00000573584 TMPOP42166 694 aaKnown RBP19.85■□□□□ 0.77
NUP88-207ENST00000573584 PLEKHF1Q96S99 279 aa19.85■□□□□ 0.77
NUP88-207ENST00000573584 TRIM27P14373 513 aa19.85■□□□□ 0.77
NUP88-207ENST00000573584 FRMPD1Q5SYB0 1578 aa19.85■□□□□ 0.77
NUP88-207ENST00000573584 GGNBP2Q9H3C7 697 aa19.84■□□□□ 0.77
NUP88-207ENST00000573584 POGZQ7Z3K3 1410 aa19.84■□□□□ 0.77
NUP88-207ENST00000573584 SSH1Q8WYL5 1049 aa19.84■□□□□ 0.77
NUP88-207ENST00000573584 MLH3Q9UHC1 1453 aa19.83■□□□□ 0.77
NUP88-207ENST00000573584 SRPK2P78362 688 aaKnown RBP19.83■□□□□ 0.77
NUP88-207ENST00000573584 ITPRIPQ8IWB1 547 aa19.83■□□□□ 0.77
NUP88-207ENST00000573584 TRIM35Q9UPQ4 493 aa19.83■□□□□ 0.77
NUP88-207ENST00000573584 ADGRB2O60241 1585 aa19.83■□□□□ 0.77
NUP88-207ENST00000573584 NPM1P06748 294 aaKnown RBP eCLIP19.83■□□□□ 0.76
NUP88-207ENST00000573584 ABCC3O15438 1527 aa19.83■□□□□ 0.76
NUP88-207ENST00000573584 STK26Q9P289 416 aa19.82■□□□□ 0.76
NUP88-207ENST00000573584 DDX19BQ9UMR2 479 aa19.82■□□□□ 0.76
NUP88-207ENST00000573584 A0A1W2PP64 1363 aa19.82■□□□□ 0.76
NUP88-207ENST00000573584 HDAC1Q13547 482 aaPredicted RBP19.82■□□□□ 0.76
NUP88-207ENST00000573584 ATF7IPQ6VMQ6 1270 aa19.82■□□□□ 0.76
NUP88-207ENST00000573584 ABCC11Q96J66 1382 aa19.82■□□□□ 0.76
NUP88-207ENST00000573584 CD109Q6YHK3 1445 aa19.81■□□□□ 0.76
NUP88-207ENST00000573584 C22orf23Q9BZE7 217 aa19.81■□□□□ 0.76
NUP88-207ENST00000573584 SENP3Q9H4L4 574 aaPredicted RBP19.81■□□□□ 0.76
NUP88-207ENST00000573584 HECW2Q9P2P5 1572 aa19.8■□□□□ 0.76
NUP88-207ENST00000573584 SPRYD3Q8NCJ5 442 aa19.8■□□□□ 0.76
NUP88-207ENST00000573584 NOB1Q9ULX3 412 aaKnown RBP19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms