RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 TRPM1Q7Z4N2 1603 aa9.26□□□□□ -0.93
VPS53-209ENST00000570771 TONSLQ96HA7 1378 aa9.25□□□□□ -0.93
VPS53-209ENST00000570771 PLEKHH1Q9ULM0 1364 aa9.25□□□□□ -0.93
VPS53-209ENST00000570771 ROBO2Q9HCK4 1378 aa9.24□□□□□ -0.93
VPS53-209ENST00000570771 DIP2AQ14689 1571 aa9.24□□□□□ -0.93
VPS53-209ENST00000570771 RALGAPBQ86X10 1494 aa9.24□□□□□ -0.93
VPS53-209ENST00000570771 C14orf93Q9H972 538 aaKnown RBP9.24□□□□□ -0.93
VPS53-209ENST00000570771 EID1Q9Y6B2 187 aa9.24□□□□□ -0.93
VPS53-209ENST00000570771 KCNA6P17658 529 aa9.23□□□□□ -0.93
VPS53-209ENST00000570771 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.23□□□□□ -0.93
VPS53-209ENST00000570771 LRRC7Q96NW7 1537 aa9.22□□□□□ -0.93
VPS53-209ENST00000570771 VGFO15240 615 aaPredicted RBP9.22□□□□□ -0.93
VPS53-209ENST00000570771 TBX22Q9Y458 520 aa9.22□□□□□ -0.93
VPS53-209ENST00000570771 GPRASP1Q5JY77 1395 aa9.22□□□□□ -0.93
VPS53-209ENST00000570771 YTHDC2Q9H6S0 1430 aaKnown RBP9.22□□□□□ -0.93
VPS53-209ENST00000570771 CPS1P31327 1500 aa9.21□□□□□ -0.93
VPS53-209ENST00000570771 XIRP1Q702N8 1843 aaKnown RBP9.21□□□□□ -0.94
VPS53-209ENST00000570771 LRPPRCP42704 1394 aaKnown RBP9.21□□□□□ -0.94
VPS53-209ENST00000570771 TECPR2O15040 1411 aa9.21□□□□□ -0.94
VPS53-209ENST00000570771 LAMC1P11047 1609 aa9.2□□□□□ -0.94
VPS53-209ENST00000570771 CHD2O14647 1828 aaKnown RBP9.2□□□□□ -0.94
VPS53-209ENST00000570771 BCANQ96GW7 911 aa9.19□□□□□ -0.94
VPS53-209ENST00000570771 STK26Q9P289 416 aa9.19□□□□□ -0.94
VPS53-209ENST00000570771 AMOTL2Q9Y2J4 779 aa9.19□□□□□ -0.94
VPS53-209ENST00000570771 PTCH1Q13635 1447 aa9.19□□□□□ -0.94
VPS53-209ENST00000570771 KNDC1Q76NI1 1749 aa9.19□□□□□ -0.94
VPS53-209ENST00000570771 ARHGEF28Q8N1W1 1705 aaKnown RBP9.19□□□□□ -0.94
VPS53-209ENST00000570771 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.19□□□□□ -0.94
VPS53-209ENST00000570771 KIAA1210Q9ULL0 1709 aa9.19□□□□□ -0.94
VPS53-209ENST00000570771 NKTRP30414 1462 aaKnown RBP9.18□□□□□ -0.94
VPS53-209ENST00000570771 TMEM94Q12767 1356 aa9.18□□□□□ -0.94
VPS53-209ENST00000570771 WAPLQ7Z5K2 1190 aa9.18□□□□□ -0.94
VPS53-209ENST00000570771 NALCNQ8IZF0 1738 aa9.18□□□□□ -0.94
VPS53-209ENST00000570771 STAC3Q96MF2 364 aa9.18□□□□□ -0.94
VPS53-209ENST00000570771 ROCK2O75116 1388 aaKnown RBP9.17□□□□□ -0.94
VPS53-209ENST00000570771 ABCC11Q96J66 1382 aa9.17□□□□□ -0.94
VPS53-209ENST00000570771 PIK3R4Q99570 1358 aa9.17□□□□□ -0.94
VPS53-209ENST00000570771 CLCN6P51797 869 aa9.17□□□□□ -0.94
VPS53-209ENST00000570771 CHADLQ6NUI6 762 aa9.17□□□□□ -0.94
VPS53-209ENST00000570771 TRAK1Q9UPV9 953 aa9.17□□□□□ -0.94
VPS53-209ENST00000570771 DLC1Q96QB1 1528 aa9.16□□□□□ -0.94
VPS53-209ENST00000570771 SAFB2Q14151 953 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS53-209ENST00000570771 TULP4Q9NRJ4 1543 aa9.15□□□□□ -0.94
VPS53-209ENST00000570771 POTEMA6NI47 508 aa9.15□□□□□ -0.94
VPS53-209ENST00000570771 PRAM1Q96QH2 718 aa9.15□□□□□ -0.94
VPS53-209ENST00000570771 FOXD4L1Q9NU39 408 aa9.15□□□□□ -0.94
VPS53-209ENST00000570771 HDGFP51858 240 aaKnown RBP9.14□□□□□ -0.95
VPS53-209ENST00000570771 FAM135BQ49AJ0 1406 aa9.14□□□□□ -0.95
VPS53-209ENST00000570771 ADGRL3Q9HAR2 1447 aa9.14□□□□□ -0.95
VPS53-209ENST00000570771 USP47Q96K76 1375 aa9.13□□□□□ -0.95
VPS53-209ENST00000570771 HIRIP3Q9BW71 556 aaPredicted RBP9.13□□□□□ -0.95
VPS53-209ENST00000570771 SSUH2Q9Y2M2 353 aa9.13□□□□□ -0.95
VPS53-209ENST00000570771 USP32Q8NFA0 1604 aa9.13□□□□□ -0.95
VPS53-209ENST00000570771 ADGRB2O60241 1585 aa9.12□□□□□ -0.95
VPS53-209ENST00000570771 PRR36Q9H6K5 1346 aa9.12□□□□□ -0.95
VPS53-209ENST00000570771 CD44P16070 742 aaKnown RBP9.12□□□□□ -0.95
VPS53-209ENST00000570771 TESK2Q96S53 571 aa9.12□□□□□ -0.95
VPS53-209ENST00000570771 CARD11Q9BXL7 1154 aa9.12□□□□□ -0.95
VPS53-209ENST00000570771 DISP3Q9P2K9 1392 aa9.12□□□□□ -0.95
VPS53-209ENST00000570771 MINK1Q8N4C8 1332 aaPredicted RBP9.11□□□□□ -0.95
VPS53-209ENST00000570771 QRICH2Q9H0J4 1663 aa9.11□□□□□ -0.95
VPS53-209ENST00000570771 PROSER2Q86WR7 435 aaPredicted RBP9.11□□□□□ -0.95
VPS53-209ENST00000570771 OTUD5Q96G74 571 aa9.11□□□□□ -0.95
VPS53-209ENST00000570771 CDC42BPGQ6DT37 1551 aa9.11□□□□□ -0.95
VPS53-209ENST00000570771 C11orf95C9JLR9 678 aaPredicted RBP9.1□□□□□ -0.95
VPS53-209ENST00000570771 CERKQ8TCT0 537 aa9.1□□□□□ -0.95
VPS53-209ENST00000570771 MST1RQ04912 1400 aa9.1□□□□□ -0.95
VPS53-209ENST00000570771 ATP7BP35670 1465 aa9.09□□□□□ -0.95
VPS53-209ENST00000570771 ST20-MTHFSA0A0A6YYL1 179 aa9.09□□□□□ -0.95
VPS53-209ENST00000570771 HSPA5P11021 654 aaKnown RBP9.09□□□□□ -0.95
VPS53-209ENST00000570771 POTEGQ6S5H5 508 aa9.09□□□□□ -0.95
VPS53-209ENST00000570771 DCBLD2Q96PD2 775 aa9.09□□□□□ -0.95
VPS53-209ENST00000570771 FMN2Q9NZ56 1722 aa9.08□□□□□ -0.96
VPS53-209ENST00000570771 CENPJQ9HC77 1338 aaPredicted RBP9.08□□□□□ -0.96
VPS53-209ENST00000570771 NUTM2FA1L443 756 aa9.08□□□□□ -0.96
VPS53-209ENST00000570771 DDX17Q92841 729 aaKnown RBP9.07□□□□□ -0.96
VPS53-209ENST00000570771 SIRT1Q96EB6 747 aa9.07□□□□□ -0.96
VPS53-209ENST00000570771 C1orf167Q5SNV9 1468 aa9.07□□□□□ -0.96
VPS53-209ENST00000570771 PCDH10Q9P2E7 1040 aa9.06□□□□□ -0.96
VPS53-209ENST00000570771 TOPAZ1Q8N9V7 1692 aa9.06□□□□□ -0.96
VPS53-209ENST00000570771 DCCP43146 1447 aa9.05□□□□□ -0.96
VPS53-209ENST00000570771 NCOA3Q9Y6Q9 1424 aa9.05□□□□□ -0.96
VPS53-209ENST00000570771 IQSEC2Q5JU85 1478 aa9.05□□□□□ -0.96
VPS53-209ENST00000570771 SBNO2Q9Y2G9 1366 aa9.05□□□□□ -0.96
VPS53-209ENST00000570771 ORAI2Q96SN7 254 aa9.05□□□□□ -0.96
VPS53-209ENST00000570771 CABP2Q9NPB3 220 aa9.05□□□□□ -0.96
VPS53-209ENST00000570771 POGKQ9P215 609 aa9.05□□□□□ -0.96
VPS53-209ENST00000570771 MYOM1P52179 1685 aa9.04□□□□□ -0.96
VPS53-209ENST00000570771 CD163L1Q9NR16 1453 aa9.04□□□□□ -0.96
VPS53-209ENST00000570771 MSH6P52701 1360 aa9.04□□□□□ -0.96
VPS53-209ENST00000570771 WASLO00401 505 aaPredicted RBP9.04□□□□□ -0.96
VPS53-209ENST00000570771 ZNF692Q9BU19 519 aaPredicted RBP9.04□□□□□ -0.96
VPS53-209ENST00000570771 ROBO1Q9Y6N7 1651 aa9.04□□□□□ -0.96
VPS53-209ENST00000570771 PRR29P0C7W0 189 aa9.03□□□□□ -0.96
VPS53-209ENST00000570771 BRINP3Q76B58 766 aa9.03□□□□□ -0.96
VPS53-209ENST00000570771 C14orf37Q86TY3 774 aa9.03□□□□□ -0.96
VPS53-209ENST00000570771 CDK19Q9BWU1 502 aa9.03□□□□□ -0.96
VPS53-209ENST00000570771 C19orf44Q9H6X5 657 aa9.03□□□□□ -0.96
VPS53-209ENST00000570771 EIF3AQ14152 1382 aaKnown RBP9.02□□□□□ -0.97
VPS53-209ENST00000570771 RGPD8O14715 1765 aaPredicted RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms